Wall clock time and date at job start Mon Mar 30 2020 03:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46958 * 2 1 4 4 H 1.08996 * 109.47385 * 53.76306 * 3 2 1 5 5 C 1.52998 * 109.47115 * 293.76279 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47337 * 59.99978 * 6 5 3 8 8 C 1.53005 * 109.47288 * 299.99819 * 7 6 5 9 9 C 1.53004 * 109.46840 * 60.00135 * 8 7 6 10 10 H 1.08997 * 109.47269 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.47117 * 60.00067 * 9 8 7 12 12 C 1.46904 * 110.99812 * 141.08130 * 11 9 8 13 13 H 1.09001 * 109.46722 * 34.71327 * 12 11 9 14 14 C 1.53000 * 109.46594 * 274.71609 * 12 11 9 15 15 C 1.50691 * 109.46954 * 154.71571 * 12 11 9 16 16 H 1.08002 * 120.00372 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00004 * 179.72224 * 15 12 11 18 18 N 1.31515 * 119.99621 * 0.27754 * 17 15 12 19 19 Si 1.86796 * 120.00264 * 180.27590 * 17 15 12 20 20 H 1.48497 * 109.47345 * 60.00146 * 19 17 15 21 21 H 1.48497 * 109.47345 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47279 * 300.00047 * 19 17 15 23 23 H 1.08999 * 109.47331 * 300.00172 * 1 2 3 24 24 H 1.09006 * 109.46831 * 60.00163 * 1 2 3 25 25 H 1.09004 * 109.47248 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47331 * 239.99828 * 2 1 3 27 27 H 1.09001 * 109.46647 * 119.99374 * 2 1 3 28 28 H 1.09009 * 109.46958 * 299.99975 * 5 3 2 29 29 H 1.08996 * 109.47329 * 59.99867 * 5 3 2 30 30 H 1.09003 * 109.46827 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.47173 * 299.99863 * 6 5 3 32 32 H 1.09009 * 109.47339 * 59.99915 * 7 6 5 33 33 H 1.09004 * 109.47367 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47067 * 300.00020 * 8 7 6 35 35 H 1.09004 * 109.47199 * 179.97438 * 8 7 6 36 36 H 1.00895 * 111.00186 * 17.12435 * 11 9 8 37 37 H 1.08992 * 109.47145 * 295.30908 * 14 12 11 38 38 H 1.08996 * 109.47375 * 55.32087 * 14 12 11 39 39 H 1.09011 * 109.46690 * 175.31542 * 14 12 11 40 40 H 0.97008 * 119.99537 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5884 1.9876 0.8288 5 6 1.6619 2.1171 -1.3202 6 6 2.1725 3.5594 -1.3204 7 6 3.6944 3.5618 -1.1640 8 6 4.0725 2.8872 0.1562 9 6 3.5620 1.4449 0.1565 10 1 3.8309 0.9644 1.0971 11 7 4.1702 0.7100 -0.9607 12 6 4.5096 -0.6634 -0.5647 13 1 3.7636 -1.0335 0.1385 14 6 5.8877 -0.6766 0.0997 15 6 4.5317 -1.5470 -1.7851 16 1 4.3149 -1.1303 -2.7577 17 6 4.8338 -2.8866 -1.6610 18 7 5.0973 -3.3941 -0.4767 19 14 4.8688 -3.9804 -3.1748 20 1 5.8847 -3.4707 -4.1305 21 1 5.2166 -5.3677 -2.7752 22 1 3.5323 -3.9726 -3.8222 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.1136 1.5720 -2.1491 29 1 0.5777 2.1151 -1.4319 30 1 1.9035 4.0398 -2.2612 31 1 1.7212 4.1047 -0.4916 32 1 4.1457 3.0164 -1.9930 33 1 4.0580 4.5893 -1.1637 34 1 3.6212 3.4325 0.9851 35 1 5.1568 2.8885 0.2675 36 1 4.9812 1.1953 -1.3139 37 1 6.6449 -0.3859 -0.6284 38 1 5.8961 0.0259 0.9330 39 1 6.1039 -1.6797 0.4679 40 1 5.3095 -4.3367 -0.3893 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251677159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:01 Heat of formation + Delta-G solvation = -47.827242 kcal Electronic energy + Delta-G solvation = -16914.213826 eV Core-core repulsion = 14533.715247 eV Total energy + Delta-G solvation = -2380.498578 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34572 -36.64969 -34.74899 -34.04797 -31.26514 -29.83101 -28.07407 -27.16203 -24.68335 -22.97121 -22.15982 -21.33112 -19.84141 -18.26272 -16.83637 -16.42619 -16.06785 -15.33816 -15.15021 -14.82040 -14.49889 -14.08001 -13.97611 -13.65776 -13.36750 -13.11187 -12.98467 -12.78457 -12.66388 -12.39029 -12.28371 -12.15792 -11.92502 -11.87271 -11.56577 -11.47902 -11.18642 -10.98138 -10.68070 -10.60636 -10.39842 -8.76624 -8.04952 -6.13722 1.42799 1.43918 1.51347 2.45999 3.23798 3.71957 3.91501 3.99383 4.15169 4.35313 4.43463 4.50074 4.58570 4.71981 4.75091 4.76771 4.81258 4.89362 4.93666 4.97808 5.03388 5.13727 5.16983 5.21908 5.26710 5.35543 5.46352 5.48769 5.55347 5.57969 5.63287 5.71173 5.75538 5.87744 5.93844 6.36304 6.78407 6.97442 7.06125 7.55874 9.00525 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.008731 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.482807 B = 3206.236479 C = 3530.468978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.062 4.062 4 H 0.070 0.930 5 C -0.101 4.101 6 C -0.109 4.109 7 C -0.110 4.110 8 C -0.118 4.118 9 C 0.086 3.914 10 H 0.016 0.984 11 N -0.667 5.667 12 C 0.217 3.783 13 H 0.013 0.987 14 C -0.156 4.156 15 C -0.503 4.503 16 H 0.052 0.948 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.953 3.047 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.326 0.674 37 H 0.027 0.973 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 12.564 0.680 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.081 4.081 4 H 0.088 0.912 5 C -0.139 4.139 6 C -0.146 4.146 7 C -0.148 4.148 8 C -0.156 4.156 9 C -0.024 4.024 10 H 0.034 0.966 11 N -0.297 5.297 12 C 0.109 3.891 13 H 0.031 0.969 14 C -0.215 4.215 15 C -0.542 4.542 16 H 0.070 0.930 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.779 3.221 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.200 1.200 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.268 12.218 0.482 13.740 hybrid contribution 1.166 -1.143 0.090 1.635 sum -5.101 11.075 0.573 12.207 Atomic orbital electron populations 1.21761 0.94979 1.01070 1.02099 1.21464 0.96020 0.97257 1.00360 1.21050 0.94018 0.94824 0.98185 0.91208 1.21422 0.99570 0.95717 0.97156 1.21455 0.95339 0.96081 1.01746 1.21427 0.96619 0.99928 0.96816 1.21774 0.99983 0.94623 0.99199 1.21567 0.95428 0.93569 0.91861 0.96576 1.60696 1.33358 1.02624 1.33048 1.19030 0.90809 0.85590 0.93712 0.96943 1.22278 1.00574 1.00734 0.97941 1.21397 1.44967 0.93376 0.94428 0.93002 1.25656 0.95579 0.99411 0.98311 1.70022 1.49352 1.13353 1.23770 0.85692 0.78476 0.77693 0.80198 1.19830 1.21309 1.20048 0.91955 0.91902 0.93810 0.93280 0.95466 0.92921 0.92104 0.91594 0.91505 0.92679 0.91024 0.90611 0.92735 0.85695 0.95380 0.96083 0.92575 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.69 71.98 0.70 -3.45 16 2 C -0.11 -4.18 3.99 30.60 0.12 -4.05 16 3 C -0.06 -1.95 2.00 -10.79 -0.02 -1.98 16 4 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 5 C -0.10 -2.90 4.82 30.59 0.15 -2.75 16 6 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 7 C -0.11 -2.70 5.74 30.59 0.18 -2.52 16 8 C -0.12 -3.19 5.25 30.60 0.16 -3.03 16 9 C 0.09 2.99 2.26 44.92 0.10 3.09 16 10 H 0.02 0.64 7.17 -2.39 -0.02 0.62 16 11 N -0.67 -27.32 4.48 -473.30 -2.12 -29.44 16 12 C 0.22 10.90 1.51 44.17 0.07 10.97 16 13 H 0.01 0.71 5.84 -2.39 -0.01 0.69 16 14 C -0.16 -7.65 8.86 71.98 0.64 -7.01 16 15 C -0.50 -27.92 8.84 25.60 0.23 -27.69 16 16 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 17 C 0.01 0.45 5.30 84.66 0.45 0.90 16 18 N -0.92 -54.15 11.36 21.45 0.24 -53.91 16 19 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.68 6.61 -2.38 -0.02 1.67 16 25 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 2.20 7.10 -2.39 -0.02 2.18 16 27 H 0.03 1.10 7.52 -2.39 -0.02 1.08 16 28 H 0.05 1.82 7.60 -2.38 -0.02 1.81 16 29 H 0.06 1.57 6.61 -2.39 -0.02 1.56 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.54 7.11 -2.38 -0.02 1.52 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 36 H 0.33 12.89 7.19 -89.70 -0.64 12.25 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.02 0.91 7.65 -2.39 -0.02 0.89 16 39 H 0.06 3.08 6.20 -2.38 -0.01 3.06 16 40 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -58.84 296.88 3.43 -55.41 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.34 Total: 21.01 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 2.94 Total: -39.88 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.88 Total: -83.35 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -58.84 3.43 -55.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251677159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.580 kcal (2) G-P(sol) polarization free energy of solvation -58.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds