Wall clock time and date at job start Mon Mar 30 2020 03:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46644 * 2 1 4 4 H 1.09000 * 109.47437 * 298.24737 * 3 2 1 5 5 C 1.50696 * 109.47093 * 178.24341 * 3 2 1 6 6 H 1.08002 * 120.00320 * 246.80230 * 5 3 2 7 7 C 1.37882 * 119.99603 * 66.52338 * 5 3 2 8 8 N 1.31506 * 120.00228 * 0.27571 * 7 5 3 9 9 Si 1.86801 * 119.99828 * 180.27374 * 7 5 3 10 10 H 1.48507 * 109.46961 * 60.00307 * 9 7 5 11 11 H 1.48502 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47321 * 300.00479 * 9 7 5 13 13 N 1.46898 * 109.47052 * 58.24527 * 3 2 1 14 14 C 1.48568 * 110.99872 * 71.73333 * 13 3 2 15 15 H 1.09000 * 110.40851 * 40.25927 * 14 13 3 16 16 C 1.53000 * 110.40804 * 277.81720 * 14 13 3 17 17 C 1.54382 * 104.59482 * 159.04097 * 14 13 3 18 18 C 1.54259 * 105.05902 * 336.14693 * 17 14 13 19 19 C 1.48555 * 111.00318 * 187.15019 * 13 3 2 20 20 H 1.09006 * 110.40983 * 319.74416 * 19 13 3 21 21 C 1.53004 * 110.40919 * 82.18136 * 19 13 3 22 22 C 1.53002 * 109.47188 * 293.01011 * 21 19 13 23 23 H 1.09008 * 109.46771 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47076 * 299.99675 * 1 2 3 25 25 H 1.09005 * 109.47301 * 60.00350 * 1 2 3 26 26 H 1.08996 * 109.47269 * 240.00828 * 2 1 3 27 27 H 1.09000 * 109.47260 * 120.00108 * 2 1 3 28 28 H 0.97007 * 120.00245 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46941 * 83.64543 * 16 14 13 30 30 H 1.09002 * 109.46992 * 203.63685 * 16 14 13 31 31 H 1.08998 * 109.47598 * 323.64096 * 16 14 13 32 32 H 1.08998 * 110.32735 * 95.03860 * 17 14 13 33 33 H 1.09000 * 110.32279 * 217.15311 * 17 14 13 34 34 H 1.08997 * 110.32661 * 118.89921 * 18 17 14 35 35 H 1.09007 * 110.32464 * 241.00465 * 18 17 14 36 36 H 1.08992 * 109.46984 * 53.01164 * 21 19 13 37 37 H 1.09009 * 109.46834 * 173.01397 * 21 19 13 38 38 H 1.08991 * 109.47038 * 202.62710 * 22 21 19 39 39 H 1.09004 * 109.47055 * 322.62776 * 22 21 19 40 40 H 1.09000 * 109.47102 * 82.62433 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7025 1.9473 -0.9053 5 6 3.5463 1.4429 0.0436 6 1 4.0613 1.8202 0.9147 7 6 4.2669 0.9562 -1.0264 8 7 3.6399 0.4967 -2.0871 9 14 6.1341 0.9495 -0.9694 10 1 6.5913 0.1232 0.1767 11 1 6.6659 0.3794 -2.2333 12 1 6.6293 2.3399 -0.8059 13 7 1.5159 2.1471 1.1777 14 6 2.1734 1.6682 2.4209 15 1 3.2385 1.5107 2.2511 16 6 1.5132 0.3778 2.9105 17 6 1.9531 2.8062 3.4406 18 6 1.7388 4.0732 2.5872 19 6 1.8475 3.5942 1.1237 20 1 2.8617 3.7381 0.7509 21 6 0.8430 4.3393 0.2423 22 6 1.0059 3.8878 -1.2105 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1469 0.1546 -2.8401 29 1 1.9412 -0.4731 2.3804 30 1 1.6872 0.2640 3.9805 31 1 0.4410 0.4229 2.7195 32 1 1.0705 2.6050 4.0477 33 1 2.8312 2.9201 4.0763 34 1 0.7510 4.4938 2.7755 35 1 2.5113 4.8110 2.8041 36 1 -0.1697 4.1191 0.5798 37 1 1.0241 5.4119 0.3119 38 1 0.6136 4.6565 -1.8760 39 1 2.0625 3.7266 -1.4245 40 1 0.4579 2.9584 -1.3658 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251823863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:12 Heat of formation + Delta-G solvation = -3.175111 kcal Electronic energy + Delta-G solvation = -17461.100326 eV Core-core repulsion = 15082.538010 eV Total energy + Delta-G solvation = -2378.562317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.93170 -34.19110 -33.18919 -31.69455 -29.48420 -29.23634 -26.20521 -24.93253 -22.99082 -21.60645 -20.08501 -19.36261 -18.79762 -16.22330 -15.59164 -14.57377 -14.31692 -13.82986 -13.26129 -13.06132 -12.75195 -12.34412 -12.10233 -12.05015 -11.75310 -11.37693 -11.28718 -11.08994 -10.88710 -10.74919 -10.58518 -10.35895 -10.25223 -10.11771 -9.91781 -9.76160 -9.63547 -9.31487 -9.16596 -8.77120 -8.17611 -7.09658 -5.96186 -4.05434 3.28963 3.34466 3.37112 4.42647 5.08574 5.29832 5.35512 5.47399 5.70362 5.82192 5.93393 6.06751 6.20237 6.23769 6.27846 6.28625 6.42559 6.45437 6.50253 6.53045 6.61755 6.64155 6.69763 6.75099 6.87704 6.92981 7.02289 7.12525 7.19185 7.22729 7.28188 7.47635 7.72137 7.81482 8.05211 8.24822 8.34477 8.52921 9.06887 9.60392 11.05680 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.011638 C = 0.011552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.023425 B = 2405.338848 C = 2423.198487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.542 4.542 6 H 0.058 0.942 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.496 5.496 14 C 0.055 3.945 15 H 0.071 0.929 16 C -0.136 4.136 17 C -0.120 4.120 18 C -0.120 4.120 19 C 0.065 3.935 20 H 0.061 0.939 21 C -0.099 4.099 22 C -0.149 4.149 23 H 0.021 0.979 24 H 0.053 0.947 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.260 0.740 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.066 0.934 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 3.879 6.227 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.078 3.922 4 H 0.086 0.914 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.221 5.221 14 C -0.054 4.054 15 H 0.089 0.911 16 C -0.193 4.193 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.044 4.044 20 H 0.079 0.921 21 C -0.137 4.137 22 C -0.206 4.206 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.786 3.691 6.024 8.533 hybrid contribution 2.097 0.012 -0.112 2.100 sum -2.689 3.703 5.912 7.476 Atomic orbital electron populations 1.21757 0.98976 0.98120 1.00776 1.21750 0.92170 0.99692 1.01606 1.19794 0.91879 0.90996 0.89534 0.91445 1.21722 0.92807 1.41651 1.01876 0.92439 1.24881 0.97690 0.95189 0.95465 1.69907 1.35106 1.41506 1.05802 0.86844 0.86782 0.78238 0.77244 1.20426 1.21353 1.20459 1.65675 1.52386 1.00951 1.03082 1.22604 0.98987 0.93341 0.90479 0.91102 1.21971 1.01184 0.97809 0.98319 1.22360 1.00199 0.95650 0.97659 1.22320 1.00497 0.97010 0.95968 1.22534 0.98015 0.90737 0.93151 0.92104 1.21368 0.99164 0.97614 0.95590 1.21928 1.03059 1.00248 0.95338 0.95965 0.92757 0.94563 0.90902 0.93555 0.92990 0.91933 0.94452 0.92382 0.92321 0.92919 0.92225 0.92825 0.92366 0.93354 0.94824 0.91500 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.56 37.16 0.36 -2.45 16 2 C -0.11 -2.64 4.74 -26.73 -0.13 -2.77 16 3 C 0.18 4.35 1.41 -68.86 -0.10 4.26 16 4 H 0.07 1.72 3.86 -51.93 -0.20 1.52 16 5 C -0.54 -14.06 6.58 -34.44 -0.23 -14.28 16 6 H 0.06 1.51 5.60 -52.49 -0.29 1.22 16 7 C 0.07 1.88 5.33 -17.82 -0.10 1.79 16 8 N -0.89 -24.61 11.84 55.43 0.66 -23.95 16 9 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.50 -10.17 3.92 -207.87 -0.81 -10.99 16 14 C 0.05 1.06 2.57 -66.06 -0.17 0.89 16 15 H 0.07 1.57 5.26 -51.93 -0.27 1.30 16 16 C -0.14 -2.41 8.07 37.16 0.30 -2.11 16 17 C -0.12 -1.98 6.48 -25.35 -0.16 -2.14 16 18 C -0.12 -1.95 6.55 -25.35 -0.17 -2.12 16 19 C 0.06 1.24 2.28 -66.07 -0.15 1.09 16 20 H 0.06 1.33 6.85 -51.93 -0.36 0.98 16 21 C -0.10 -1.73 5.54 -26.73 -0.15 -1.87 16 22 C -0.15 -2.79 8.31 37.16 0.31 -2.48 16 23 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 24 H 0.05 1.06 6.04 -51.93 -0.31 0.75 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.90 6.66 -51.93 -0.35 1.56 16 27 H 0.05 1.06 4.58 -51.93 -0.24 0.82 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.06 1.19 5.53 -51.93 -0.29 0.90 16 30 H 0.04 0.57 8.03 -51.93 -0.42 0.16 16 31 H 0.06 1.03 6.66 -51.93 -0.35 0.68 16 32 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.43 7.23 -51.93 -0.38 1.06 16 40 H 0.06 1.27 6.76 -51.93 -0.35 0.92 16 LS Contribution 288.12 15.07 4.34 4.34 Total: -1.00 -26.27 288.12 -7.93 -34.19 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.71 Total: 2.63 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.38 Total: -22.21 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.16 Total: -34.94 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.27 -7.93 -34.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251823863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.018 kcal (2) G-P(sol) polarization free energy of solvation -26.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds