Wall clock time and date at job start Mon Mar 30 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46644 * 2 1 4 4 H 1.09000 * 109.47437 * 298.24737 * 3 2 1 5 5 C 1.50696 * 109.47093 * 178.24341 * 3 2 1 6 6 H 1.08002 * 120.00320 * 246.80230 * 5 3 2 7 7 C 1.37882 * 119.99603 * 66.52338 * 5 3 2 8 8 N 1.31506 * 120.00228 * 0.27571 * 7 5 3 9 9 Si 1.86801 * 119.99828 * 180.27374 * 7 5 3 10 10 H 1.48507 * 109.46961 * 60.00307 * 9 7 5 11 11 H 1.48502 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47321 * 300.00479 * 9 7 5 13 13 N 1.46898 * 109.47052 * 58.24527 * 3 2 1 14 14 C 1.48568 * 110.99872 * 71.73333 * 13 3 2 15 15 H 1.09000 * 110.40851 * 40.25927 * 14 13 3 16 16 C 1.53000 * 110.40804 * 277.81720 * 14 13 3 17 17 C 1.54382 * 104.59482 * 159.04097 * 14 13 3 18 18 C 1.54259 * 105.05902 * 336.14693 * 17 14 13 19 19 C 1.48555 * 111.00318 * 187.15019 * 13 3 2 20 20 H 1.09006 * 110.40983 * 319.74416 * 19 13 3 21 21 C 1.53004 * 110.40919 * 82.18136 * 19 13 3 22 22 C 1.53002 * 109.47188 * 293.01011 * 21 19 13 23 23 H 1.09008 * 109.46771 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47076 * 299.99675 * 1 2 3 25 25 H 1.09005 * 109.47301 * 60.00350 * 1 2 3 26 26 H 1.08996 * 109.47269 * 240.00828 * 2 1 3 27 27 H 1.09000 * 109.47260 * 120.00108 * 2 1 3 28 28 H 0.97007 * 120.00245 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46941 * 83.64543 * 16 14 13 30 30 H 1.09002 * 109.46992 * 203.63685 * 16 14 13 31 31 H 1.08998 * 109.47598 * 323.64096 * 16 14 13 32 32 H 1.08998 * 110.32735 * 95.03860 * 17 14 13 33 33 H 1.09000 * 110.32279 * 217.15311 * 17 14 13 34 34 H 1.08997 * 110.32661 * 118.89921 * 18 17 14 35 35 H 1.09007 * 110.32464 * 241.00465 * 18 17 14 36 36 H 1.08992 * 109.46984 * 53.01164 * 21 19 13 37 37 H 1.09009 * 109.46834 * 173.01397 * 21 19 13 38 38 H 1.08991 * 109.47038 * 202.62710 * 22 21 19 39 39 H 1.09004 * 109.47055 * 322.62776 * 22 21 19 40 40 H 1.09000 * 109.47102 * 82.62433 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7025 1.9473 -0.9053 5 6 3.5463 1.4429 0.0436 6 1 4.0613 1.8202 0.9147 7 6 4.2669 0.9562 -1.0264 8 7 3.6399 0.4967 -2.0871 9 14 6.1341 0.9495 -0.9694 10 1 6.5913 0.1232 0.1767 11 1 6.6659 0.3794 -2.2333 12 1 6.6293 2.3399 -0.8059 13 7 1.5159 2.1471 1.1777 14 6 2.1734 1.6682 2.4209 15 1 3.2385 1.5107 2.2511 16 6 1.5132 0.3778 2.9105 17 6 1.9531 2.8062 3.4406 18 6 1.7388 4.0732 2.5872 19 6 1.8475 3.5942 1.1237 20 1 2.8617 3.7381 0.7509 21 6 0.8430 4.3393 0.2423 22 6 1.0059 3.8878 -1.2105 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1469 0.1546 -2.8401 29 1 1.9412 -0.4731 2.3804 30 1 1.6872 0.2640 3.9805 31 1 0.4410 0.4229 2.7195 32 1 1.0705 2.6050 4.0477 33 1 2.8312 2.9201 4.0763 34 1 0.7510 4.4938 2.7755 35 1 2.5113 4.8110 2.8041 36 1 -0.1697 4.1191 0.5798 37 1 1.0241 5.4119 0.3119 38 1 0.6136 4.6565 -1.8760 39 1 2.0625 3.7266 -1.4245 40 1 0.4579 2.9584 -1.3658 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251823863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:11 Heat of formation + Delta-G solvation = -17.293888 kcal Electronic energy + Delta-G solvation = -17461.712563 eV Core-core repulsion = 15082.538010 eV Total energy + Delta-G solvation = -2379.174553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51049 -35.96046 -34.68089 -33.62738 -31.11050 -30.71245 -28.03827 -26.48873 -24.79008 -23.07928 -21.70953 -20.86129 -20.56880 -18.12073 -17.29374 -16.36710 -15.92179 -15.35552 -14.91042 -14.78830 -14.23532 -13.88170 -13.67965 -13.67424 -13.40625 -13.11925 -13.01051 -12.76400 -12.60405 -12.38131 -12.25057 -11.99388 -11.83557 -11.68702 -11.58005 -11.32032 -11.14420 -10.98926 -10.90839 -10.67605 -10.09795 -8.86806 -7.99596 -6.15778 1.35495 1.37084 1.43004 2.41841 3.22065 3.57882 3.92485 4.08690 4.33902 4.39199 4.47817 4.60155 4.62460 4.75502 4.80157 4.84624 4.90710 4.97112 4.98749 5.07638 5.13457 5.16745 5.18476 5.30575 5.38870 5.41479 5.45136 5.49609 5.56671 5.58152 5.64196 5.70631 5.78770 5.99896 6.14239 6.33927 6.50219 6.72275 7.10528 7.52686 8.97943 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.011638 C = 0.011552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.023425 B = 2405.338848 C = 2423.198487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C 0.191 3.809 4 H 0.047 0.953 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.934 3.066 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.492 5.492 14 C 0.047 3.953 15 H 0.037 0.963 16 C -0.128 4.128 17 C -0.114 4.114 18 C -0.113 4.113 19 C 0.057 3.943 20 H 0.024 0.976 21 C -0.093 4.093 22 C -0.139 4.139 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.029 0.971 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.258 0.742 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.029 0.971 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 4.926 8.103 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C 0.083 3.917 4 H 0.065 0.935 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.761 3.239 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.215 5.215 14 C -0.062 4.062 15 H 0.055 0.945 16 C -0.185 4.185 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.052 4.052 20 H 0.043 0.957 21 C -0.131 4.131 22 C -0.197 4.197 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.738 4.744 7.915 10.866 hybrid contribution 2.398 -0.295 -0.683 2.510 sum -3.340 4.449 7.232 9.124 Atomic orbital electron populations 1.21603 0.96412 0.99340 1.00888 1.21626 0.94403 0.99020 0.99830 1.19573 0.90506 0.91377 0.90242 0.93530 1.22013 0.94448 1.40388 1.01239 0.93228 1.25511 1.01214 0.95467 0.95461 1.70029 1.36164 1.42724 1.06273 0.85999 0.82714 0.78118 0.77103 1.20167 1.21237 1.20241 1.65665 1.51800 1.01698 1.02385 1.22664 0.97010 0.95536 0.90988 0.94542 1.21879 1.00904 0.96046 0.99688 1.22331 1.01702 0.94103 0.97023 1.22300 1.02238 0.97246 0.93281 1.22620 0.96607 0.90231 0.95724 0.95746 1.21357 0.99130 0.98792 0.93805 1.21792 1.00297 1.00172 0.97404 0.94196 0.91715 0.95203 0.94441 0.93545 0.93325 0.93953 0.91773 0.91970 0.90304 0.91707 0.90072 0.91547 0.91207 0.90825 0.92342 0.95186 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.56 71.98 0.69 -4.27 16 2 C -0.11 -5.22 4.74 30.60 0.15 -5.08 16 3 C 0.19 9.20 1.41 44.17 0.06 9.26 16 4 H 0.05 2.47 3.86 -2.39 -0.01 2.46 16 5 C -0.54 -28.99 6.58 25.60 0.17 -28.82 16 6 H 0.05 2.69 5.60 -2.91 -0.02 2.68 16 7 C 0.02 1.26 5.33 84.66 0.45 1.72 16 8 N -0.91 -52.59 11.84 21.45 0.25 -52.34 16 9 Si 0.93 44.13 29.54 68.60 2.03 46.16 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.49 -19.85 3.92 -811.56 -3.18 -23.03 16 14 C 0.05 1.76 2.57 45.06 0.12 1.87 16 15 H 0.04 1.63 5.26 -2.39 -0.01 1.62 16 16 C -0.13 -4.31 8.07 71.98 0.58 -3.73 16 17 C -0.11 -3.37 6.48 31.49 0.20 -3.17 16 18 C -0.11 -3.31 6.55 31.49 0.21 -3.10 16 19 C 0.06 2.13 2.28 45.06 0.10 2.23 16 20 H 0.02 1.09 6.85 -2.38 -0.02 1.07 16 21 C -0.09 -3.06 5.54 30.60 0.17 -2.89 16 22 C -0.14 -5.23 8.31 71.98 0.60 -4.64 16 23 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.06 2.42 6.04 -2.39 -0.01 2.40 16 25 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.04 2.02 6.66 -2.39 -0.02 2.00 16 27 H 0.05 2.16 4.58 -2.39 -0.01 2.15 16 28 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 29 H 0.04 1.58 5.53 -2.39 -0.01 1.57 16 30 H 0.06 1.79 8.03 -2.39 -0.02 1.78 16 31 H 0.06 2.04 6.66 -2.39 -0.02 2.02 16 32 H 0.08 2.06 7.86 -2.39 -0.02 2.04 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.07 7.86 -2.39 -0.02 2.05 16 35 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.03 1.32 7.23 -2.38 -0.02 1.30 16 40 H 0.04 1.75 6.76 -2.39 -0.02 1.74 16 Total: -1.00 -57.87 288.12 3.59 -54.28 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.00 Total: 15.54 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 3.49 Total: -40.61 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.93 Total: -75.37 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -57.87 3.59 -54.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251823863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.985 kcal (2) G-P(sol) polarization free energy of solvation -57.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds