Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47329 * 2 1 4 4 H 1.08994 * 109.47705 * 301.09709 * 3 2 1 5 5 C 1.50701 * 109.47204 * 181.09746 * 3 2 1 6 6 H 1.08008 * 119.99761 * 239.99809 * 5 3 2 7 7 C 1.37875 * 120.00180 * 59.99887 * 5 3 2 8 8 N 1.31517 * 119.99729 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99909 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47376 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47190 * 120.00269 * 9 7 5 12 12 H 1.48500 * 109.47032 * 240.00055 * 9 7 5 13 13 N 1.46905 * 109.47235 * 61.09441 * 3 2 1 14 14 C 1.47850 * 110.99460 * 72.07400 * 13 3 2 15 15 H 1.08990 * 110.37629 * 27.42168 * 14 13 3 16 16 C 1.53003 * 110.37034 * 265.19153 * 14 13 3 17 17 C 1.54908 * 104.79417 * 146.36620 * 14 13 3 18 18 C 1.55144 * 101.65359 * 322.92665 * 17 14 13 19 19 C 1.47440 * 111.00364 * 192.91268 * 13 3 2 20 20 H 1.08998 * 109.88920 * 117.33336 * 19 13 3 21 21 C 1.53002 * 109.88754 * 356.15004 * 19 13 3 22 22 C 1.52997 * 109.47114 * 174.71712 * 21 19 13 23 23 H 1.09000 * 109.47143 * 59.99556 * 1 2 3 24 24 H 1.09003 * 109.46665 * 299.99707 * 1 2 3 25 25 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47143 * 120.00444 * 2 1 3 27 27 H 1.09000 * 109.46876 * 239.99812 * 2 1 3 28 28 H 0.96993 * 119.99705 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47094 * 65.50627 * 16 14 13 30 30 H 1.09007 * 109.46983 * 185.50633 * 16 14 13 31 31 H 1.09006 * 109.47364 * 305.50529 * 16 14 13 32 32 H 1.09004 * 110.98935 * 81.01682 * 17 14 13 33 33 H 1.09000 * 110.98656 * 204.79327 * 17 14 13 34 34 H 1.08995 * 110.70365 * 154.03566 * 18 17 14 35 35 H 1.09001 * 110.70122 * 277.27193 * 18 17 14 36 36 H 1.09000 * 109.47388 * 294.72408 * 21 19 13 37 37 H 1.09006 * 109.46853 * 54.72054 * 21 19 13 38 38 H 1.09004 * 109.47275 * 65.04020 * 22 21 19 39 39 H 1.09005 * 109.46849 * 185.03796 * 22 21 19 40 40 H 1.08998 * 109.47436 * 305.03631 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6608 1.9619 -0.8799 5 6 3.5468 1.4424 -0.0272 6 1 4.1014 1.9050 0.7759 7 6 4.2174 0.8521 -1.0773 8 7 3.5421 0.2893 -2.0555 9 14 6.0851 0.8515 -1.1106 10 1 6.6020 1.5440 0.0971 11 1 6.5795 -0.5486 -1.1287 12 1 6.5587 1.5594 -2.3271 13 7 1.5721 2.1273 1.2125 14 6 2.2893 1.6361 2.4085 15 1 3.2798 1.2732 2.1346 16 6 1.4871 0.5272 3.0925 17 6 2.4023 2.8711 3.3368 18 6 2.6399 4.0121 2.3129 19 6 1.7754 3.5839 1.1084 20 1 0.8137 4.0958 1.1415 21 6 2.5008 3.9162 -0.1971 22 6 2.5899 5.4351 -0.3586 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 4.0138 -0.1257 -2.7944 29 1 1.4300 -0.3392 2.4335 30 1 1.9790 0.2441 4.0231 31 1 0.4809 0.8867 3.3081 32 1 1.4767 3.0295 3.8902 33 1 3.2490 2.7726 4.0162 34 1 2.2975 4.9664 2.7131 35 1 3.6919 4.0656 2.0327 36 1 3.5053 3.4938 -0.1724 37 1 1.9493 3.4933 -1.0369 38 1 3.2164 5.8484 0.4319 39 1 3.0259 5.6722 -1.3291 40 1 1.5911 5.8666 -0.2937 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251823867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = -14.391030 kcal Electronic energy + Delta-G solvation = -17472.238046 eV Core-core repulsion = 15093.189370 eV Total energy + Delta-G solvation = -2379.048676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77304 -35.92187 -34.71281 -33.46932 -31.16550 -30.59096 -28.20540 -26.02221 -24.71029 -23.61384 -21.87315 -21.36282 -19.50325 -18.14974 -17.07187 -16.45813 -16.12818 -15.53187 -15.03364 -14.56744 -14.36141 -13.96113 -13.83393 -13.43624 -13.17074 -13.08034 -12.94672 -12.80975 -12.68407 -12.28296 -12.10833 -11.96828 -11.81901 -11.71152 -11.58394 -11.39987 -11.16259 -11.04943 -10.91381 -10.60089 -10.18526 -8.76218 -7.95272 -6.08794 1.35292 1.40149 1.47303 2.43218 3.22301 3.54319 4.00460 4.04567 4.23011 4.47445 4.55929 4.62103 4.68387 4.77428 4.81096 4.84265 4.90656 4.96046 5.00417 5.03262 5.09856 5.16989 5.24899 5.26623 5.34465 5.43028 5.44682 5.51682 5.55679 5.63586 5.66536 5.77400 5.90836 5.98952 6.20861 6.34753 6.54028 6.82286 7.09155 7.53880 9.00143 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.013480 C = 0.011081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.740642 B = 2076.618074 C = 2526.254259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.213 3.787 4 H 0.014 0.986 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.932 3.068 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.523 5.523 14 C 0.058 3.942 15 H 0.047 0.953 16 C -0.129 4.129 17 C -0.118 4.118 18 C -0.125 4.125 19 C 0.081 3.919 20 H 0.069 0.931 21 C -0.139 4.139 22 C -0.140 4.140 23 H 0.027 0.973 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.257 0.743 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 5.422 8.254 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C 0.106 3.894 4 H 0.032 0.968 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.760 3.240 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.246 5.246 14 C -0.050 4.050 15 H 0.064 0.936 16 C -0.186 4.186 17 C -0.156 4.156 18 C -0.163 4.163 19 C -0.027 4.027 20 H 0.087 0.913 21 C -0.177 4.177 22 C -0.198 4.198 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.149 5.213 8.132 10.160 hybrid contribution 2.018 -0.183 -0.859 2.201 sum -1.131 5.030 7.274 8.915 Atomic orbital electron populations 1.21576 0.96793 0.99333 1.00583 1.21545 0.94072 0.98918 1.00235 1.19249 0.91335 0.90849 0.88010 0.96813 1.21889 0.93637 1.34360 1.05695 0.92687 1.25485 1.00873 0.95727 0.95842 1.70015 1.35850 1.38758 1.10756 0.85898 0.82951 0.77418 0.77746 1.19432 1.21212 1.21284 1.63900 1.54372 1.02840 1.03524 1.22634 0.96548 0.95553 0.90283 0.93553 1.21801 0.99861 0.97817 0.99140 1.22707 1.01893 0.94052 0.96911 1.22761 0.99176 0.99015 0.95372 1.22258 0.96921 0.89318 0.94236 0.91328 1.22248 1.02410 0.95743 0.97290 1.21735 1.01525 0.95555 1.00962 0.95333 0.92184 0.94114 0.94400 0.92690 0.93388 0.93554 0.92050 0.92431 0.90252 0.90880 0.89790 0.92981 0.91004 0.94509 0.92264 0.93710 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.70 71.98 0.70 -4.39 16 2 C -0.11 -5.20 4.77 30.59 0.15 -5.05 16 3 C 0.21 10.27 1.33 44.17 0.06 10.33 16 4 H 0.01 0.77 5.73 -2.39 -0.01 0.76 16 5 C -0.52 -26.58 4.42 25.60 0.11 -26.47 16 6 H 0.06 2.86 5.84 -2.91 -0.02 2.84 16 7 C 0.02 1.05 5.30 84.65 0.45 1.50 16 8 N -0.91 -51.82 11.31 21.45 0.24 -51.58 16 9 Si 0.93 43.20 29.54 68.60 2.03 45.22 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.52 -21.31 4.07 -815.29 -3.32 -24.63 16 14 C 0.06 2.17 2.34 45.39 0.11 2.27 16 15 H 0.05 2.04 5.34 -2.39 -0.01 2.03 16 16 C -0.13 -4.23 9.15 71.98 0.66 -3.57 16 17 C -0.12 -3.53 6.50 31.98 0.21 -3.32 16 18 C -0.12 -3.89 5.71 31.78 0.18 -3.71 16 19 C 0.08 2.98 3.32 45.26 0.15 3.13 16 20 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 21 C -0.14 -5.55 3.91 30.59 0.12 -5.44 16 22 C -0.14 -4.38 9.69 71.98 0.70 -3.68 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 2.31 7.53 -2.39 -0.02 2.29 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.78 5.24 -2.39 -0.01 1.76 16 27 H 0.05 2.98 6.04 -2.39 -0.01 2.96 16 28 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.05 1.68 5.28 -2.39 -0.01 1.66 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.08 2.13 8.06 -2.38 -0.02 2.11 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.75 7.76 -2.39 -0.02 1.73 16 36 H 0.07 3.30 5.10 -2.39 -0.01 3.29 16 37 H 0.04 1.69 5.94 -2.38 -0.01 1.68 16 38 H 0.06 1.67 7.65 -2.38 -0.02 1.65 16 39 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -55.87 289.44 3.53 -52.35 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.99 Total: 17.04 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 3.59 Total: -38.40 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -3.07 Total: -76.20 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -55.87 3.53 -52.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251823867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.954 kcal (2) G-P(sol) polarization free energy of solvation -55.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds