Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.52999 * 109.47380 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.62840 * 51.89164 * 4 3 2 6 6 C 1.55140 * 110.85706 * 288.69069 * 4 3 2 7 7 C 1.54906 * 101.65353 * 205.89055 * 6 4 3 8 8 N 1.47846 * 104.79447 * 37.06708 * 7 6 4 9 9 C 1.46904 * 111.00128 * 213.63498 * 8 7 6 10 10 H 1.08996 * 109.46583 * 60.28976 * 9 8 7 11 11 C 1.50692 * 109.47207 * 180.29200 * 9 8 7 12 12 H 1.08003 * 120.00032 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00115 * 180.02562 * 11 9 8 14 14 N 1.31512 * 119.99728 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00356 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46965 * 60.00023 * 15 13 11 17 17 H 1.48497 * 109.47348 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47093 * 300.00250 * 15 13 11 19 19 C 1.53002 * 109.46670 * 300.29259 * 9 8 7 20 20 C 1.52997 * 109.47036 * 297.99773 * 19 9 8 21 21 C 1.47444 * 108.56980 * 335.90568 * 8 7 6 22 22 H 1.09006 * 109.47250 * 59.99552 * 1 2 3 23 23 H 1.08997 * 109.47590 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47007 * 299.99934 * 1 2 3 25 25 H 1.09000 * 109.47007 * 240.00066 * 2 1 3 26 26 H 1.08996 * 109.46805 * 120.00164 * 2 1 3 27 27 H 1.09000 * 109.46997 * 60.00060 * 3 2 1 28 28 H 1.09000 * 109.46942 * 300.00246 * 3 2 1 29 29 H 1.09007 * 110.99043 * 323.98190 * 6 4 3 30 30 H 1.08996 * 110.99513 * 87.75586 * 6 4 3 31 31 H 1.08993 * 110.37125 * 278.23630 * 7 6 4 32 32 H 1.09003 * 110.37044 * 155.88969 * 7 6 4 33 33 H 0.96998 * 120.00172 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46579 * 178.00239 * 19 9 8 35 35 H 1.08994 * 109.47273 * 58.00262 * 19 9 8 36 36 H 1.08997 * 109.47355 * 54.49655 * 20 19 9 37 37 H 1.09002 * 109.47019 * 174.49110 * 20 19 9 38 38 H 1.08992 * 109.47464 * 294.48813 * 20 19 9 39 39 H 1.08998 * 109.88769 * 120.39352 * 21 8 7 40 40 H 1.08999 * 109.88589 * 241.58736 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9544 0.8128 -0.8018 6 6 4.1218 0.9781 1.3742 7 6 5.5086 1.6676 1.4037 8 7 5.2913 2.9804 0.7592 9 6 6.4812 3.4014 0.0076 10 1 6.6992 2.6676 -0.7683 11 6 6.2252 4.7436 -0.6278 12 1 5.2735 5.2346 -0.4877 13 6 7.2055 5.3443 -1.3888 14 7 8.3641 4.7461 -1.5598 15 14 6.8879 7.0077 -2.1771 16 1 6.5911 8.0077 -1.1201 17 1 8.0908 7.4333 -2.9367 18 1 5.7295 6.9049 -3.1005 19 6 7.6745 3.5069 0.9594 20 6 7.3887 4.5725 2.0194 21 6 4.1158 2.8804 -0.1252 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.4913 1.3342 2.1890 30 1 4.2236 -0.1066 1.4077 31 1 6.2350 1.0833 0.8390 32 1 5.8444 1.8008 2.4321 33 1 9.0537 5.1685 -2.0955 34 1 8.5652 3.7848 0.3959 35 1 7.8376 2.5452 1.4457 36 1 6.4456 4.3463 2.5170 37 1 8.1942 4.5798 2.7537 38 1 7.3226 5.5505 1.5429 39 1 3.3543 3.5947 0.1880 40 1 4.4098 3.0766 -1.1563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252867480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = -24.223945 kcal Electronic energy + Delta-G solvation = -16409.201386 eV Core-core repulsion = 14029.726324 eV Total energy + Delta-G solvation = -2379.475063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.65766 -35.51024 -33.55705 -31.38553 -29.66103 -28.87859 -26.00096 -25.20052 -23.06318 -21.57935 -20.74998 -19.61137 -18.80092 -15.92089 -15.41523 -15.15983 -14.81256 -14.17809 -13.47260 -13.26587 -13.01338 -12.90089 -12.32879 -12.14522 -11.89439 -11.72170 -11.60034 -11.20285 -11.05809 -10.86141 -10.69939 -10.58973 -10.41226 -10.18273 -10.13278 -10.01023 -9.82035 -9.55848 -9.24940 -8.77756 -8.37188 -7.04810 -5.95688 -3.98444 3.34505 3.38972 3.42064 4.45156 4.88181 5.00899 5.06386 5.18951 5.29567 5.35099 5.45723 5.59161 5.78150 5.85906 5.93496 5.97009 6.01203 6.09920 6.20169 6.33355 6.40644 6.43202 6.49378 6.51633 6.64053 6.70180 6.82064 6.84881 6.91642 7.19737 7.35359 7.50262 7.70745 7.80572 7.90519 8.23429 8.42380 8.66194 9.07179 9.65083 11.10976 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030972 B = 0.007182 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.829593 B = 3897.852009 C = 4499.724956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.113 4.113 5 H 0.067 0.933 6 C -0.122 4.122 7 C 0.044 3.956 8 N -0.523 5.523 9 C 0.212 3.788 10 H -0.004 1.004 11 C -0.495 4.495 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.279 1.279 19 C -0.109 4.109 20 C -0.119 4.119 21 C 0.060 3.940 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.012 0.988 36 H 0.045 0.955 37 H 0.013 0.987 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -7.473 3.643 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.143 4.143 4 C -0.132 4.132 5 H 0.085 0.915 6 C -0.160 4.160 7 C -0.084 4.084 8 N -0.247 5.247 9 C 0.106 3.894 10 H 0.014 0.986 11 C -0.533 4.533 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 C -0.148 4.148 20 C -0.177 4.177 21 C -0.068 4.068 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.030 0.970 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.499 -7.044 3.919 12.459 hybrid contribution 0.161 0.301 -1.124 1.174 sum -9.338 -6.743 2.796 11.853 Atomic orbital electron populations 1.21781 0.96359 1.01093 1.01679 1.21543 0.95280 0.97548 1.01776 1.21558 0.94843 0.96055 1.01881 1.22486 0.94878 0.98547 0.97338 0.91481 1.22753 0.97264 0.98906 0.97083 1.22926 0.95233 0.90742 0.99483 1.63635 1.05764 1.24057 1.31282 1.19445 0.85188 0.95211 0.89577 0.98647 1.21022 1.00054 1.03216 1.29038 0.92226 1.24894 0.95144 0.97592 0.96512 1.69875 1.04819 1.38519 1.40099 0.86650 0.77380 0.84517 0.79401 1.20261 1.21452 1.20448 1.21522 1.01678 0.95007 0.96547 1.21446 0.98353 1.00677 0.97191 1.22661 0.93341 0.93339 0.97468 0.92892 0.93205 0.92886 0.92369 0.92140 0.91952 0.92155 0.91406 0.92255 0.94732 0.91655 0.93048 0.89339 0.96965 0.93562 0.96792 0.92697 0.92201 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.38 5.82 -26.73 -0.16 -1.54 16 3 C -0.11 -1.38 4.57 -26.73 -0.12 -1.50 16 4 C -0.11 -1.78 2.91 -88.80 -0.26 -2.04 16 5 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.12 -1.86 5.93 -24.59 -0.15 -2.00 16 7 C 0.04 0.83 5.37 -2.30 -0.01 0.81 16 8 N -0.52 -11.35 4.25 -224.68 -0.95 -12.31 16 9 C 0.21 5.36 1.36 -68.87 -0.09 5.27 16 10 H 0.00 -0.11 8.09 -51.93 -0.42 -0.53 16 11 C -0.49 -13.43 6.42 -34.44 -0.22 -13.65 16 12 H 0.06 1.64 7.41 -52.48 -0.39 1.25 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 14 N -0.89 -25.48 11.34 55.43 0.63 -24.85 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.11 -2.67 5.27 -26.73 -0.14 -2.81 16 20 C -0.12 -2.72 9.46 37.16 0.35 -2.37 16 21 C 0.06 1.19 5.63 -2.84 -0.02 1.17 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.66 7.69 -51.93 -0.40 0.26 16 27 H 0.06 0.81 8.01 -51.93 -0.42 0.40 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.67 7.61 -51.93 -0.40 0.28 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.09 2.40 6.13 -51.93 -0.32 2.08 16 35 H 0.01 0.27 7.00 -51.93 -0.36 -0.10 16 36 H 0.05 1.02 7.50 -51.93 -0.39 0.63 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 39 H 0.06 1.16 7.82 -51.93 -0.41 0.75 16 40 H 0.06 1.34 7.03 -51.93 -0.36 0.98 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -27.70 305.60 -8.88 -36.58 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.60 Total: -2.24 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.54 Total: -18.22 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.33 Total: -37.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.70 -8.88 -36.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252867480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.356 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds