Wall clock time and date at job start Mon Mar 30 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47493 * 2 1 4 4 H 1.08995 * 109.46906 * 177.64848 * 3 2 1 5 5 C 1.50699 * 109.47103 * 57.64534 * 3 2 1 6 6 H 1.07998 * 120.00541 * 240.00189 * 5 3 2 7 7 C 1.37886 * 119.99854 * 60.00371 * 5 3 2 8 8 N 1.31512 * 119.99787 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46842 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47143 * 119.99840 * 9 7 5 12 12 H 1.48497 * 109.47322 * 240.00172 * 9 7 5 13 13 N 1.46903 * 109.46893 * 297.64801 * 3 2 1 14 14 C 1.46893 * 111.00027 * 273.95288 * 13 3 2 15 15 H 1.08995 * 110.02155 * 34.51607 * 14 13 3 16 16 C 1.53878 * 110.03138 * 273.07408 * 14 13 3 17 17 C 1.54263 * 106.60078 * 240.71609 * 16 14 13 18 18 C 1.54883 * 104.19652 * 336.39236 * 17 16 14 19 19 C 1.54261 * 110.03244 * 155.91315 * 14 13 3 20 20 H 1.08997 * 110.48785 * 24.21338 * 19 14 13 21 21 C 1.52999 * 110.48658 * 261.56979 * 19 14 13 22 22 C 1.53007 * 109.47212 * 174.99865 * 21 19 14 23 23 H 1.09004 * 109.47030 * 294.37410 * 1 2 3 24 24 H 1.09006 * 109.46727 * 54.36657 * 1 2 3 25 25 H 1.08995 * 109.47690 * 174.37141 * 1 2 3 26 26 H 1.09007 * 109.46654 * 119.99952 * 2 1 3 27 27 H 1.08998 * 109.47035 * 239.99267 * 2 1 3 28 28 H 0.96996 * 120.00298 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99609 * 149.99884 * 13 3 2 30 30 H 1.09004 * 110.03322 * 0.02562 * 16 14 13 31 31 H 1.08999 * 110.02853 * 121.42740 * 16 14 13 32 32 H 1.08998 * 110.48574 * 217.70896 * 17 16 14 33 33 H 1.09006 * 110.48447 * 95.07436 * 17 16 14 34 34 H 1.08999 * 110.75471 * 279.62442 * 18 17 16 35 35 H 1.08997 * 110.91407 * 156.32978 * 18 17 16 36 36 H 1.09002 * 109.47107 * 294.99793 * 21 19 14 37 37 H 1.09004 * 109.46816 * 55.00254 * 21 19 14 38 38 H 1.09001 * 109.47043 * 180.02562 * 22 21 19 39 39 H 1.09002 * 109.47026 * 299.99978 * 22 21 19 40 40 H 1.08995 * 109.46739 * 60.00497 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1292 1.4426 0.0422 5 6 1.4907 2.1695 1.2002 6 1 0.8744 3.0460 1.0652 7 6 1.7750 1.7157 2.4709 8 7 2.5251 0.6481 2.6353 9 14 1.0947 2.6173 3.9587 10 1 0.2862 3.7781 3.5069 11 1 0.2385 1.6953 4.7474 12 1 2.2179 3.0949 4.8044 13 7 1.5974 2.1183 -1.2269 14 6 2.5378 1.8773 -2.3293 15 1 2.9567 0.8742 -2.2499 16 6 3.6651 2.9243 -2.2988 17 6 3.5913 3.6904 -3.6357 18 6 2.8778 2.7083 -4.5975 19 6 1.8183 2.0440 -3.6836 20 1 0.9478 2.6910 -3.5761 21 6 1.4077 0.6804 -4.2432 22 6 0.5891 0.8788 -5.5205 23 1 -0.3633 0.4241 0.9361 24 1 -0.3633 0.5988 -0.8353 25 1 -0.3634 -1.0226 -0.1008 26 1 1.8933 -0.5139 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 2.7248 0.3286 3.5290 29 1 1.4705 3.1068 -1.0694 30 1 3.5146 3.6109 -1.4657 31 1 4.6317 2.4294 -2.2049 32 1 4.5927 3.9207 -3.9992 33 1 3.0071 4.6035 -3.5203 34 1 3.5778 1.9657 -4.9805 35 1 2.3994 3.2447 -5.4170 36 1 2.3002 0.0973 -4.4706 37 1 0.8060 0.1508 -3.5046 38 1 0.2962 -0.0926 -5.9189 39 1 -0.3034 1.4619 -5.2932 40 1 1.1908 1.4084 -6.2591 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252934032.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:51 Heat of formation + Delta-G solvation = -34.565847 kcal Electronic energy + Delta-G solvation = -16573.690700 eV Core-core repulsion = 14193.767179 eV Total energy + Delta-G solvation = -2379.923521 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.63264 -35.39234 -32.93832 -31.93322 -30.32322 -27.29519 -27.04631 -25.05910 -23.14445 -22.10224 -20.19750 -19.45739 -18.63607 -16.30794 -15.25120 -14.92921 -14.59118 -14.19580 -13.59140 -13.19297 -12.98221 -12.76443 -12.73714 -12.09369 -11.80652 -11.70093 -11.40789 -10.98456 -10.93351 -10.77072 -10.65009 -10.41881 -10.34473 -10.28441 -10.06025 -9.99086 -9.93323 -9.52362 -9.28050 -8.71255 -8.43354 -7.09464 -5.98563 -4.03283 3.29615 3.37999 3.41699 4.42846 4.94617 4.97951 5.06178 5.32803 5.42729 5.46760 5.58348 5.73549 5.83417 5.94912 5.97002 5.99828 6.08369 6.18313 6.21322 6.29243 6.38806 6.43595 6.56927 6.61525 6.65998 6.72111 6.78303 6.89572 6.92843 7.29242 7.42240 7.57084 7.79517 7.85224 7.92056 8.32388 8.49070 8.76864 9.08188 9.61437 11.07527 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033740 B = 0.007511 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.683386 B = 3727.050295 C = 4175.462117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.679 5.679 14 C 0.090 3.910 15 H 0.070 0.930 16 C -0.152 4.152 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.078 4.078 20 H 0.077 0.923 21 C -0.112 4.112 22 C -0.148 4.148 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.011 0.989 26 H 0.083 0.917 27 H 0.009 0.991 28 H 0.259 0.741 29 H 0.330 0.670 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 2.110 -12.126 12.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.021 4.021 15 H 0.088 0.912 16 C -0.192 4.192 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.098 4.098 20 H 0.095 0.905 21 C -0.150 4.150 22 C -0.206 4.206 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.101 0.899 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.381 1.475 -12.134 12.230 hybrid contribution 0.514 0.958 1.228 1.640 sum 0.132 2.433 -10.907 11.175 Atomic orbital electron populations 1.21432 0.97601 0.96996 1.01519 1.21414 0.95011 0.98383 0.99093 1.19091 0.93262 0.91512 0.85274 0.98275 1.21252 1.31338 1.11836 0.90472 0.92384 1.24881 0.95155 0.95026 0.98808 1.69900 1.37711 1.23218 1.21995 0.86562 0.78751 0.79824 0.83004 1.19817 1.21050 1.21214 1.60729 1.46888 1.15928 1.07325 1.22202 0.90480 0.97660 0.91797 0.91175 1.22938 1.00159 0.98864 0.97217 1.22290 0.99598 0.98203 0.95799 1.22568 0.97832 0.98114 0.97312 1.22006 0.97675 0.96115 0.93957 0.90501 1.21491 0.99532 0.97127 0.96831 1.21771 1.00038 1.00850 0.97919 0.93068 0.93402 0.97026 0.89897 0.97257 0.93110 0.85257 0.91573 0.92620 0.92636 0.92081 0.92034 0.92313 0.92821 0.91305 0.93458 0.92935 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.45 37.16 0.35 -2.34 16 2 C -0.10 -2.45 5.56 -26.73 -0.15 -2.60 16 3 C 0.22 5.33 2.14 -68.87 -0.15 5.18 16 4 H 0.00 -0.01 7.73 -51.93 -0.40 -0.41 16 5 C -0.51 -13.67 7.32 -34.44 -0.25 -13.92 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.28 11.34 55.43 0.63 -24.65 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.68 -14.04 5.25 -99.79 -0.52 -14.56 16 14 C 0.09 1.60 2.58 -66.60 -0.17 1.42 16 15 H 0.07 1.36 6.93 -51.93 -0.36 1.00 16 16 C -0.15 -2.50 6.30 -25.61 -0.16 -2.66 16 17 C -0.12 -1.63 6.83 -25.08 -0.17 -1.80 16 18 C -0.12 -1.54 5.67 -24.74 -0.14 -1.68 16 19 C -0.08 -1.16 2.56 -88.96 -0.23 -1.39 16 20 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 21 C -0.11 -1.57 5.28 -26.73 -0.14 -1.71 16 22 C -0.15 -1.74 9.79 37.16 0.36 -1.38 16 23 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 24 H 0.05 1.05 7.51 -51.93 -0.39 0.66 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.08 2.25 6.13 -51.93 -0.32 1.93 16 27 H 0.01 0.20 7.51 -51.93 -0.39 -0.19 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.82 7.65 -39.29 -0.30 6.52 16 30 H 0.07 1.18 7.58 -51.93 -0.39 0.79 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.76 7.97 -51.93 -0.41 0.35 16 35 H 0.06 0.67 8.05 -51.93 -0.42 0.26 16 36 H 0.05 0.73 8.02 -51.93 -0.42 0.31 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.53 7.55 -51.93 -0.39 0.14 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -26.99 307.18 -8.72 -35.71 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.49 Total: 3.89 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -0.94 Total: -21.25 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.10 Total: -39.21 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.99 -8.72 -35.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252934032.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.141 kcal (2) G-P(sol) polarization free energy of solvation -26.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds