Wall clock time and date at job start Mon Mar 30 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47493 * 2 1 4 4 H 1.08995 * 109.46906 * 177.64848 * 3 2 1 5 5 C 1.50699 * 109.47103 * 57.64534 * 3 2 1 6 6 H 1.07998 * 120.00541 * 240.00189 * 5 3 2 7 7 C 1.37886 * 119.99854 * 60.00371 * 5 3 2 8 8 N 1.31512 * 119.99787 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46842 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47143 * 119.99840 * 9 7 5 12 12 H 1.48497 * 109.47322 * 240.00172 * 9 7 5 13 13 N 1.46903 * 109.46893 * 297.64801 * 3 2 1 14 14 C 1.46893 * 111.00027 * 273.95288 * 13 3 2 15 15 H 1.08995 * 110.02155 * 34.51607 * 14 13 3 16 16 C 1.53878 * 110.03138 * 273.07408 * 14 13 3 17 17 C 1.54263 * 106.60078 * 240.71609 * 16 14 13 18 18 C 1.54883 * 104.19652 * 336.39236 * 17 16 14 19 19 C 1.54261 * 110.03244 * 155.91315 * 14 13 3 20 20 H 1.08997 * 110.48785 * 24.21338 * 19 14 13 21 21 C 1.52999 * 110.48658 * 261.56979 * 19 14 13 22 22 C 1.53007 * 109.47212 * 174.99865 * 21 19 14 23 23 H 1.09004 * 109.47030 * 294.37410 * 1 2 3 24 24 H 1.09006 * 109.46727 * 54.36657 * 1 2 3 25 25 H 1.08995 * 109.47690 * 174.37141 * 1 2 3 26 26 H 1.09007 * 109.46654 * 119.99952 * 2 1 3 27 27 H 1.08998 * 109.47035 * 239.99267 * 2 1 3 28 28 H 0.96996 * 120.00298 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99609 * 149.99884 * 13 3 2 30 30 H 1.09004 * 110.03322 * 0.02562 * 16 14 13 31 31 H 1.08999 * 110.02853 * 121.42740 * 16 14 13 32 32 H 1.08998 * 110.48574 * 217.70896 * 17 16 14 33 33 H 1.09006 * 110.48447 * 95.07436 * 17 16 14 34 34 H 1.08999 * 110.75471 * 279.62442 * 18 17 16 35 35 H 1.08997 * 110.91407 * 156.32978 * 18 17 16 36 36 H 1.09002 * 109.47107 * 294.99793 * 21 19 14 37 37 H 1.09004 * 109.46816 * 55.00254 * 21 19 14 38 38 H 1.09001 * 109.47043 * 180.02562 * 22 21 19 39 39 H 1.09002 * 109.47026 * 299.99978 * 22 21 19 40 40 H 1.08995 * 109.46739 * 60.00497 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1292 1.4426 0.0422 5 6 1.4907 2.1695 1.2002 6 1 0.8744 3.0460 1.0652 7 6 1.7750 1.7157 2.4709 8 7 2.5251 0.6481 2.6353 9 14 1.0947 2.6173 3.9587 10 1 0.2862 3.7781 3.5069 11 1 0.2385 1.6953 4.7474 12 1 2.2179 3.0949 4.8044 13 7 1.5974 2.1183 -1.2269 14 6 2.5378 1.8773 -2.3293 15 1 2.9567 0.8742 -2.2499 16 6 3.6651 2.9243 -2.2988 17 6 3.5913 3.6904 -3.6357 18 6 2.8778 2.7083 -4.5975 19 6 1.8183 2.0440 -3.6836 20 1 0.9478 2.6910 -3.5761 21 6 1.4077 0.6804 -4.2432 22 6 0.5891 0.8788 -5.5205 23 1 -0.3633 0.4241 0.9361 24 1 -0.3633 0.5988 -0.8353 25 1 -0.3634 -1.0226 -0.1008 26 1 1.8933 -0.5139 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 2.7248 0.3286 3.5290 29 1 1.4705 3.1068 -1.0694 30 1 3.5146 3.6109 -1.4657 31 1 4.6317 2.4294 -2.2049 32 1 4.5927 3.9207 -3.9992 33 1 3.0071 4.6035 -3.5203 34 1 3.5778 1.9657 -4.9805 35 1 2.3994 3.2447 -5.4170 36 1 2.3002 0.0973 -4.4706 37 1 0.8060 0.1508 -3.5046 38 1 0.2962 -0.0926 -5.9189 39 1 -0.3034 1.4619 -5.2932 40 1 1.1908 1.4084 -6.2591 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252934032.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:50 Heat of formation + Delta-G solvation = -48.808112 kcal Electronic energy + Delta-G solvation = -16574.308291 eV Core-core repulsion = 14193.767179 eV Total energy + Delta-G solvation = -2380.541112 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.99513 -37.18439 -34.28382 -33.67535 -32.10027 -28.82618 -28.37494 -26.77817 -25.08003 -23.23825 -21.67430 -20.77183 -20.36345 -18.27715 -16.95481 -16.42433 -16.11855 -15.32788 -15.31410 -14.96135 -14.56778 -14.11804 -13.87680 -13.73032 -13.64716 -13.10990 -12.84196 -12.74742 -12.45595 -12.38363 -12.16723 -11.89824 -11.82482 -11.74759 -11.49577 -11.38112 -11.30934 -11.18116 -11.05186 -10.74570 -10.52219 -8.84761 -8.09014 -6.20685 1.39313 1.42048 1.52610 2.42452 3.19769 3.63001 3.75138 3.86404 4.16232 4.31012 4.50168 4.56476 4.59504 4.67305 4.73253 4.80368 4.81161 4.85566 4.95047 4.97531 5.04150 5.11070 5.19522 5.26316 5.29027 5.34438 5.41025 5.41775 5.47325 5.56750 5.62447 5.69295 5.73743 5.84646 5.95458 6.29497 6.57875 6.88653 7.10278 7.48390 8.96444 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033740 B = 0.007511 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.683386 B = 3727.050295 C = 4175.462117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C 0.226 3.774 4 H -0.039 1.039 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.673 5.673 14 C 0.085 3.915 15 H 0.048 0.952 16 C -0.152 4.152 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.072 4.072 20 H 0.072 0.928 21 C -0.111 4.111 22 C -0.142 4.142 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.016 0.984 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 3.009 -13.767 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C 0.117 3.883 4 H -0.022 1.022 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.302 5.302 14 C -0.025 4.025 15 H 0.066 0.934 16 C -0.192 4.192 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.091 4.091 20 H 0.090 0.910 21 C -0.149 4.149 22 C -0.200 4.200 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.038 2.381 -13.797 14.039 hybrid contribution 0.761 0.651 1.726 1.996 sum -0.277 3.032 -12.071 12.449 Atomic orbital electron populations 1.21281 0.96012 0.98309 1.00609 1.21283 0.96285 0.97905 0.97944 1.18834 0.90766 0.92075 0.86627 1.02188 1.21513 1.31140 1.11849 0.91461 0.92588 1.25624 0.95436 0.95725 1.01503 1.70036 1.38752 1.24475 1.22520 0.85591 0.78118 0.78815 0.79633 1.19074 1.20792 1.20929 1.60694 1.47664 1.15548 1.06330 1.22310 0.90915 0.96902 0.92403 0.93401 1.22869 0.99196 0.98392 0.98697 1.22265 1.01002 0.98096 0.93760 1.22537 0.97104 0.98005 0.97194 1.21936 0.97843 0.96839 0.92442 0.90975 1.21461 0.99683 0.96294 0.97438 1.21716 0.99763 1.01677 0.96795 0.95093 0.92670 0.94906 0.92841 0.96510 0.93128 0.85305 0.93608 0.93232 0.90828 0.91404 0.91255 0.89868 0.92527 0.93799 0.92533 0.93011 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.75 9.45 71.98 0.68 -4.07 16 2 C -0.10 -4.77 5.56 30.59 0.17 -4.60 16 3 C 0.23 11.48 2.14 44.17 0.09 11.57 16 4 H -0.04 -2.27 7.73 -2.39 -0.02 -2.29 16 5 C -0.52 -28.42 7.32 25.60 0.19 -28.23 16 6 H 0.06 3.02 7.60 -2.91 -0.02 3.00 16 7 C 0.02 0.89 5.30 84.66 0.45 1.34 16 8 N -0.92 -53.45 11.34 21.45 0.24 -53.21 16 9 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.67 -28.26 5.25 -469.63 -2.47 -30.72 16 14 C 0.09 3.05 2.58 45.64 0.12 3.17 16 15 H 0.05 1.91 6.93 -2.39 -0.02 1.89 16 16 C -0.15 -4.98 6.30 31.32 0.20 -4.79 16 17 C -0.11 -2.78 6.83 31.67 0.22 -2.56 16 18 C -0.11 -2.48 5.67 31.88 0.18 -2.30 16 19 C -0.07 -2.01 2.56 -9.72 -0.02 -2.03 16 20 H 0.07 2.12 8.05 -2.39 -0.02 2.10 16 21 C -0.11 -2.95 5.28 30.60 0.16 -2.79 16 22 C -0.14 -2.94 9.79 71.98 0.70 -2.24 16 23 H 0.03 1.50 7.37 -2.38 -0.02 1.48 16 24 H 0.05 2.39 7.51 -2.38 -0.02 2.37 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 3.00 6.13 -2.38 -0.01 2.98 16 27 H 0.02 0.78 7.51 -2.39 -0.02 0.76 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.33 13.78 7.65 -89.69 -0.69 13.10 16 30 H 0.05 1.67 7.58 -2.38 -0.02 1.65 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.07 1.48 7.97 -2.39 -0.02 1.46 16 35 H 0.08 1.53 8.05 -2.39 -0.02 1.52 16 36 H 0.06 1.45 8.02 -2.39 -0.02 1.43 16 37 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.15 7.55 -2.39 -0.02 1.14 16 Total: -1.00 -58.53 307.18 3.23 -55.31 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.29 Total: 20.23 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.14 Total: -37.54 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.22 Total: -83.93 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -58.53 3.23 -55.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252934032.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.498 kcal (2) G-P(sol) polarization free energy of solvation -58.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds