Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46795 * 2 1 4 4 C 1.52999 * 109.47058 * 240.00212 * 2 1 3 5 5 N 1.46901 * 109.47373 * 60.00200 * 4 2 1 6 6 C 1.46901 * 111.00161 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47194 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47310 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99560 * 0.02562 * 8 7 6 10 10 C 1.37867 * 120.00120 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00215 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00075 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47115 * 60.00241 * 12 10 8 14 14 H 1.48501 * 109.47184 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47312 * 299.99973 * 12 10 8 16 16 C 1.53002 * 109.47296 * 120.00009 * 2 1 3 17 17 C 1.53776 * 113.61267 * 55.03586 * 16 2 1 18 18 C 1.53780 * 87.08131 * 220.01980 * 17 16 2 19 19 C 1.53779 * 113.61219 * 317.53885 * 16 2 1 20 20 H 1.08994 * 109.47227 * 306.29087 * 1 2 3 21 21 H 1.09000 * 109.46995 * 66.29693 * 1 2 3 22 22 H 1.09000 * 109.46894 * 186.29376 * 1 2 3 23 23 H 1.09001 * 109.46866 * 185.54485 * 3 2 1 24 24 H 1.09000 * 109.47105 * 305.54969 * 3 2 1 25 25 H 1.08995 * 109.46939 * 65.54802 * 3 2 1 26 26 H 1.09004 * 109.47095 * 179.97438 * 4 2 1 27 27 H 1.09000 * 109.47311 * 299.99710 * 4 2 1 28 28 H 1.00897 * 111.00174 * 56.03878 * 5 4 2 29 29 H 1.08996 * 109.46611 * 299.99366 * 6 5 4 30 30 H 1.09004 * 109.47004 * 59.99190 * 6 5 4 31 31 H 1.08998 * 109.47016 * 300.00214 * 7 6 5 32 32 H 1.09004 * 109.47114 * 59.99475 * 7 6 5 33 33 H 0.97000 * 120.00168 * 179.97438 * 11 10 8 34 34 H 1.09002 * 112.90476 * 186.28855 * 16 2 1 35 35 H 1.08999 * 113.61935 * 105.46785 * 17 16 2 36 36 H 1.09002 * 113.69042 * 334.57801 * 17 16 2 37 37 H 1.09004 * 113.61890 * 139.98371 * 18 17 16 38 38 H 1.08997 * 113.61298 * 270.88635 * 18 17 16 39 39 H 1.09004 * 113.61476 * 25.43247 * 19 16 2 40 40 H 1.09001 * 113.61636 * 254.52911 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5504 -0.0287 -2.4487 6 6 2.0209 -0.6951 -3.6704 7 6 1.4914 0.0528 -4.8956 8 6 1.9746 -0.6305 -6.1489 9 1 2.5968 -1.5105 -6.0785 10 6 1.6224 -0.1323 -7.3852 11 7 0.8643 0.9390 -7.4709 12 14 2.2219 -0.9789 -8.9387 13 1 1.7272 -2.3789 -8.9619 14 1 1.7079 -0.2531 -10.1278 15 1 3.7068 -0.9781 -8.9613 16 6 2.0401 -0.7213 1.2492 17 6 1.4842 -2.1462 1.4079 18 6 1.3632 -1.8471 2.9115 19 6 1.2654 -0.3611 2.5279 20 1 -0.3633 0.6082 0.8283 21 1 -0.3633 0.4131 -0.9410 22 1 -0.3633 -1.0215 0.1127 23 1 3.1255 1.4442 -0.0993 24 1 1.5977 1.9843 -0.8361 25 1 1.7600 1.9269 0.9355 26 1 3.1301 -0.7208 -1.2495 27 1 1.6767 -1.7489 -1.2493 28 1 1.8198 0.9436 -2.4401 29 1 3.1108 -0.6952 -3.6873 30 1 1.6572 -1.7225 -3.6869 31 1 0.4016 0.0526 -4.8783 32 1 1.8549 1.0803 -4.8792 33 1 0.6169 1.2897 -8.3408 34 1 3.1225 -0.6596 1.3625 35 1 2.2089 -2.9262 1.1748 36 1 0.5243 -2.2993 0.9146 37 1 0.4534 -2.2422 3.3636 38 1 2.2605 -2.0933 3.4792 39 1 0.2456 -0.0247 2.3404 40 1 1.8136 0.3001 3.1990 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258877669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = -6.307637 kcal Electronic energy + Delta-G solvation = -15819.383549 eV Core-core repulsion = 13440.685395 eV Total energy + Delta-G solvation = -2378.698153 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91336 -36.35482 -33.86244 -32.32989 -29.08279 -27.20245 -26.37637 -25.30473 -24.80081 -22.94478 -20.50844 -19.99709 -18.06529 -16.28186 -15.82275 -15.37586 -15.21316 -14.48884 -14.22510 -13.64995 -13.26063 -12.99436 -12.70553 -12.41181 -12.16466 -12.00149 -11.75779 -11.42123 -11.25545 -11.01420 -10.95863 -10.86857 -10.72492 -10.55294 -10.25992 -9.99644 -9.91087 -9.89745 -9.26601 -9.11047 -8.32123 -7.70316 -5.96954 -3.99447 3.35178 3.39336 3.41861 4.43473 4.52196 4.60470 4.65974 4.79083 5.02069 5.14441 5.27909 5.30290 5.38813 5.56677 5.65757 5.69631 5.70353 5.81870 5.86942 5.88646 5.93922 6.02746 6.14921 6.19179 6.24489 6.31671 6.40940 6.44570 6.49193 6.59803 6.73937 7.03521 7.55690 7.77853 7.87999 8.03596 8.13470 8.47501 9.07743 9.64117 11.14472 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.059030 B = 0.004459 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.222669 B = 6278.483338 C = 6483.577176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.143 4.143 4 C 0.071 3.929 5 N -0.689 5.689 6 C 0.066 3.934 7 C 0.026 3.974 8 C -0.522 4.522 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.099 4.099 17 C -0.140 4.140 18 C -0.144 4.144 19 C -0.139 4.139 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.334 0.666 29 H 0.013 0.987 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.012 0.988 33 H 0.261 0.739 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -2.264 19.112 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.059 4.059 5 N -0.321 5.321 6 C -0.062 4.062 7 C -0.012 4.012 8 C -0.561 4.561 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.118 4.118 17 C -0.177 4.177 18 C -0.181 4.181 19 C -0.177 4.177 20 H 0.065 0.935 21 H 0.092 0.908 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.153 0.847 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.612 -2.474 18.972 19.142 hybrid contribution 1.364 -0.201 -0.935 1.666 sum 1.975 -2.675 18.036 18.340 Atomic orbital electron populations 1.21901 0.94076 1.01279 1.02136 1.20452 0.96371 0.94906 0.93466 1.21851 1.00444 0.95955 1.01774 1.21907 0.96033 0.98159 0.89817 1.60606 1.63699 1.06161 1.01612 1.22136 0.95881 0.98522 0.89695 1.19057 0.97166 0.95021 0.89913 1.21156 1.31531 1.12301 0.91075 0.92865 1.24996 0.95174 0.95053 0.99107 1.69966 1.36494 1.22384 1.24471 0.86654 0.79045 0.79651 0.82606 1.20233 1.21269 1.20314 1.22555 0.99213 0.95726 0.94285 1.23019 1.01824 0.96844 0.96003 1.22799 1.01490 0.97068 0.96785 1.23053 1.01338 0.96186 0.97081 0.93534 0.90793 0.92970 0.93273 0.91892 0.92916 0.96329 0.91552 0.84735 0.96918 0.92524 0.95684 0.96917 0.92966 0.89850 0.91957 0.89473 0.91843 0.90714 0.89396 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.46 37.16 0.28 -1.43 16 2 C -0.05 -0.63 0.50 -154.50 -0.08 -0.71 16 3 C -0.14 -1.69 7.96 37.16 0.30 -1.39 16 4 C 0.07 1.06 4.50 -3.82 -0.02 1.04 16 5 N -0.69 -12.48 5.61 -113.78 -0.64 -13.12 16 6 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 7 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 8 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 9 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 12 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C -0.10 -1.05 3.03 -89.81 -0.27 -1.32 16 17 C -0.14 -1.42 6.71 -25.92 -0.17 -1.60 16 18 C -0.14 -1.28 8.08 -25.92 -0.21 -1.49 16 19 C -0.14 -1.30 7.15 -25.92 -0.19 -1.49 16 20 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 21 H 0.07 1.08 7.42 -51.93 -0.39 0.69 16 22 H 0.05 0.64 6.00 -51.93 -0.31 0.32 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.80 6.86 -51.93 -0.36 0.44 16 25 H 0.05 0.56 7.94 -51.93 -0.41 0.14 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 1.02 7.61 -51.93 -0.39 0.62 16 28 H 0.33 5.91 6.90 -39.29 -0.27 5.64 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.93 6.02 -51.93 -0.31 0.62 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.83 5.72 -51.93 -0.30 0.53 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -29.55 307.09 -8.50 -38.05 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.27 Total: 0.30 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.94 Total: -20.24 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.10 Total: -39.65 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.55 -8.50 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258877669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.747 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds