Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46795 * 2 1 4 4 C 1.52999 * 109.47058 * 240.00212 * 2 1 3 5 5 N 1.46901 * 109.47373 * 60.00200 * 4 2 1 6 6 C 1.46901 * 111.00161 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47194 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47310 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99560 * 0.02562 * 8 7 6 10 10 C 1.37867 * 120.00120 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00215 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00075 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47115 * 60.00241 * 12 10 8 14 14 H 1.48501 * 109.47184 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47312 * 299.99973 * 12 10 8 16 16 C 1.53002 * 109.47296 * 120.00009 * 2 1 3 17 17 C 1.53776 * 113.61267 * 55.03586 * 16 2 1 18 18 C 1.53780 * 87.08131 * 220.01980 * 17 16 2 19 19 C 1.53779 * 113.61219 * 317.53885 * 16 2 1 20 20 H 1.08994 * 109.47227 * 306.29087 * 1 2 3 21 21 H 1.09000 * 109.46995 * 66.29693 * 1 2 3 22 22 H 1.09000 * 109.46894 * 186.29376 * 1 2 3 23 23 H 1.09001 * 109.46866 * 185.54485 * 3 2 1 24 24 H 1.09000 * 109.47105 * 305.54969 * 3 2 1 25 25 H 1.08995 * 109.46939 * 65.54802 * 3 2 1 26 26 H 1.09004 * 109.47095 * 179.97438 * 4 2 1 27 27 H 1.09000 * 109.47311 * 299.99710 * 4 2 1 28 28 H 1.00897 * 111.00174 * 56.03878 * 5 4 2 29 29 H 1.08996 * 109.46611 * 299.99366 * 6 5 4 30 30 H 1.09004 * 109.47004 * 59.99190 * 6 5 4 31 31 H 1.08998 * 109.47016 * 300.00214 * 7 6 5 32 32 H 1.09004 * 109.47114 * 59.99475 * 7 6 5 33 33 H 0.97000 * 120.00168 * 179.97438 * 11 10 8 34 34 H 1.09002 * 112.90476 * 186.28855 * 16 2 1 35 35 H 1.08999 * 113.61935 * 105.46785 * 17 16 2 36 36 H 1.09002 * 113.69042 * 334.57801 * 17 16 2 37 37 H 1.09004 * 113.61890 * 139.98371 * 18 17 16 38 38 H 1.08997 * 113.61298 * 270.88635 * 18 17 16 39 39 H 1.09004 * 113.61476 * 25.43247 * 19 16 2 40 40 H 1.09001 * 113.61636 * 254.52911 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5504 -0.0287 -2.4487 6 6 2.0209 -0.6951 -3.6704 7 6 1.4914 0.0528 -4.8956 8 6 1.9746 -0.6305 -6.1489 9 1 2.5968 -1.5105 -6.0785 10 6 1.6224 -0.1323 -7.3852 11 7 0.8643 0.9390 -7.4709 12 14 2.2219 -0.9789 -8.9387 13 1 1.7272 -2.3789 -8.9619 14 1 1.7079 -0.2531 -10.1278 15 1 3.7068 -0.9781 -8.9613 16 6 2.0401 -0.7213 1.2492 17 6 1.4842 -2.1462 1.4079 18 6 1.3632 -1.8471 2.9115 19 6 1.2654 -0.3611 2.5279 20 1 -0.3633 0.6082 0.8283 21 1 -0.3633 0.4131 -0.9410 22 1 -0.3633 -1.0215 0.1127 23 1 3.1255 1.4442 -0.0993 24 1 1.5977 1.9843 -0.8361 25 1 1.7600 1.9269 0.9355 26 1 3.1301 -0.7208 -1.2495 27 1 1.6767 -1.7489 -1.2493 28 1 1.8198 0.9436 -2.4401 29 1 3.1108 -0.6952 -3.6873 30 1 1.6572 -1.7225 -3.6869 31 1 0.4016 0.0526 -4.8783 32 1 1.8549 1.0803 -4.8792 33 1 0.6169 1.2897 -8.3408 34 1 3.1225 -0.6596 1.3625 35 1 2.2089 -2.9262 1.1748 36 1 0.5243 -2.2993 0.9146 37 1 0.4534 -2.2422 3.3636 38 1 2.2605 -2.0933 3.4792 39 1 0.2456 -0.0247 2.3404 40 1 1.8136 0.3001 3.1990 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258877669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = -23.066102 kcal Electronic energy + Delta-G solvation = -15820.110250 eV Core-core repulsion = 13440.685395 eV Total energy + Delta-G solvation = -2379.424855 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81587 -37.69443 -35.56281 -34.09936 -30.94644 -28.18566 -27.52616 -26.40883 -26.06834 -24.44352 -22.42535 -20.89768 -19.00363 -18.48767 -16.97621 -16.61735 -16.46103 -16.14685 -15.46574 -14.97054 -14.73927 -14.20589 -14.07207 -13.75268 -13.45431 -13.41326 -12.87955 -12.83523 -12.64724 -12.45947 -12.35598 -12.19737 -12.03318 -11.75507 -11.68697 -11.43276 -11.33955 -11.07116 -10.80346 -10.66076 -10.56179 -9.22120 -8.20423 -6.32335 1.39917 1.43435 1.51422 2.40491 3.12704 3.35627 3.72272 3.81225 3.92935 4.01793 4.17235 4.31192 4.32678 4.50447 4.58321 4.64597 4.76948 4.79804 4.87410 4.92279 4.97086 5.01739 5.06725 5.10543 5.13894 5.18258 5.23662 5.29342 5.43641 5.48343 5.52203 5.60099 5.67464 5.78848 5.80161 6.15282 6.30596 6.57822 6.84672 7.36966 8.91569 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.059030 B = 0.004459 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.222669 B = 6278.483338 C = 6483.577176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 C -0.141 4.141 4 C 0.072 3.928 5 N -0.692 5.692 6 C 0.084 3.916 7 C 0.033 3.967 8 C -0.547 4.547 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.968 3.032 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.266 1.266 16 C -0.099 4.099 17 C -0.145 4.145 18 C -0.137 4.137 19 C -0.135 4.135 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.337 0.663 29 H 0.014 0.986 30 H 0.055 0.945 31 H -0.006 1.006 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -3.062 20.084 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 C -0.199 4.199 4 C -0.057 4.057 5 N -0.323 5.323 6 C -0.045 4.045 7 C -0.004 4.004 8 C -0.586 4.586 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.792 3.208 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.118 4.118 17 C -0.182 4.182 18 C -0.174 4.174 19 C -0.172 4.172 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.013 0.987 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.381 -3.277 19.968 20.282 hybrid contribution 1.100 0.072 -1.200 1.630 sum 2.481 -3.205 18.768 19.201 Atomic orbital electron populations 1.21857 0.94230 1.01520 1.01429 1.20403 0.96152 0.95114 0.92917 1.21837 1.00441 0.95532 1.02075 1.21980 0.96129 0.98039 0.89534 1.60526 1.63926 1.06353 1.01509 1.21761 0.95585 0.97788 0.89389 1.18904 0.95128 0.94365 0.92030 1.21592 1.31923 1.12789 0.92283 0.92255 1.25978 0.95078 0.95655 1.02951 1.70105 1.37560 1.23893 1.25578 0.85468 0.78911 0.78668 0.77787 1.19165 1.20678 1.19126 1.22554 0.99533 0.95884 0.93860 1.23035 1.01380 0.96544 0.97229 1.22782 1.02302 0.96541 0.95802 1.23030 1.01117 0.96779 0.96252 0.91767 0.93381 0.92838 0.93083 0.93299 0.91241 0.96131 0.91878 0.84470 0.96743 0.92677 0.98741 0.99147 0.92702 0.89544 0.92064 0.90220 0.91144 0.89795 0.89444 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 7.46 71.98 0.54 -2.67 16 2 C -0.05 -1.06 0.50 -52.18 -0.03 -1.09 16 3 C -0.14 -3.17 7.96 71.98 0.57 -2.59 16 4 C 0.07 2.12 4.50 86.30 0.39 2.51 16 5 N -0.69 -25.32 5.61 -513.88 -2.88 -28.21 16 6 C 0.08 3.68 5.62 86.30 0.49 4.17 16 7 C 0.03 1.83 5.23 29.85 0.16 1.98 16 8 C -0.55 -32.03 9.11 25.60 0.23 -31.80 16 9 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 10 C 0.00 0.08 5.46 84.65 0.46 0.54 16 11 N -0.93 -57.73 13.29 21.44 0.28 -57.45 16 12 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 C -0.10 -1.91 3.03 -10.27 -0.03 -1.94 16 17 C -0.14 -2.70 6.71 31.12 0.21 -2.49 16 18 C -0.14 -2.09 8.08 31.12 0.25 -1.83 16 19 C -0.13 -2.16 7.15 31.12 0.22 -1.94 16 20 H 0.06 1.30 6.43 -2.39 -0.02 1.29 16 21 H 0.05 1.41 7.42 -2.39 -0.02 1.39 16 22 H 0.05 1.26 6.00 -2.39 -0.01 1.24 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.22 6.86 -2.39 -0.02 1.21 16 25 H 0.07 1.32 7.94 -2.39 -0.02 1.30 16 26 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.06 1.90 7.61 -2.39 -0.02 1.88 16 28 H 0.34 12.13 6.90 -89.70 -0.62 11.51 16 29 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.05 2.42 8.14 -2.38 -0.02 2.40 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.61 6.02 -2.39 -0.01 1.59 16 37 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.42 5.72 -2.39 -0.01 1.41 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -63.21 307.09 3.26 -59.95 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.37 Total: 15.99 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.46 Total: -37.15 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.60 Total: -85.66 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.21 3.26 -59.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258877669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.885 kcal (2) G-P(sol) polarization free energy of solvation -63.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds