Wall clock time and date at job start Mon Mar 30 2020 02:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47121 * 2 1 4 4 C 1.52994 * 109.47421 * 119.99686 * 2 1 3 5 5 H 1.09003 * 109.47408 * 194.84124 * 4 2 1 6 6 C 1.50707 * 109.46999 * 74.84482 * 4 2 1 7 7 H 1.08003 * 119.99939 * 246.32876 * 6 4 2 8 8 C 1.37871 * 120.00028 * 66.32255 * 6 4 2 9 9 N 1.31518 * 120.00036 * 192.41095 * 8 6 4 10 10 Si 1.86797 * 120.00220 * 12.40971 * 8 6 4 11 11 H 1.48500 * 109.47252 * 93.02781 * 10 8 6 12 12 H 1.48506 * 109.47263 * 213.02698 * 10 8 6 13 13 H 1.48501 * 109.47233 * 333.03048 * 10 8 6 14 14 C 1.52999 * 109.47323 * 314.84304 * 4 2 1 15 15 H 1.09003 * 108.96267 * 41.80734 * 14 4 2 16 16 C 1.54514 * 109.04243 * 282.88850 * 14 4 2 17 17 C 1.50534 * 108.86365 * 162.20619 * 16 14 4 18 18 C 1.53915 * 112.93987 * 91.74945 * 17 16 14 19 19 N 1.47934 * 113.33642 * 317.74946 * 18 17 16 20 20 C 1.44302 * 113.64348 * 318.14209 * 19 18 17 21 21 C 1.45880 * 109.04195 * 160.71723 * 14 4 2 22 22 H 1.09001 * 109.47580 * 312.98104 * 1 2 3 23 23 H 1.09000 * 109.47252 * 72.98505 * 1 2 3 24 24 H 1.09003 * 109.47279 * 192.98532 * 1 2 3 25 25 H 1.09000 * 109.47370 * 240.00500 * 2 1 3 26 26 H 1.08997 * 109.47566 * 151.16804 * 3 2 1 27 27 H 1.09001 * 109.47166 * 271.17255 * 3 2 1 28 28 H 1.09006 * 109.47183 * 31.16641 * 3 2 1 29 29 H 0.96992 * 120.00233 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.57202 * 282.02167 * 16 14 4 31 31 H 1.09008 * 109.57324 * 42.39221 * 16 14 4 32 32 H 1.09004 * 108.79076 * 212.64010 * 17 16 14 33 33 H 1.08998 * 108.79217 * 330.85549 * 17 16 14 34 34 H 1.09005 * 108.70826 * 196.75818 * 18 17 16 35 35 H 1.08998 * 108.71313 * 78.74793 * 18 17 16 36 36 H 1.00903 * 110.99911 * 84.09384 * 19 18 17 37 37 H 1.09002 * 109.69684 * 335.68512 * 20 19 18 38 38 H 1.09003 * 109.69892 * 215.09959 * 20 19 18 39 39 H 1.08997 * 108.84560 * 302.88782 * 21 14 4 40 40 H 1.09006 * 108.83740 * 61.24292 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 3.0977 -0.4989 1.3907 6 6 1.8572 -2.2076 1.0809 7 1 1.1611 -2.7409 1.7114 8 6 2.5786 -2.8867 0.1221 9 7 2.2525 -4.1208 -0.1947 10 14 4.0191 -2.0540 -0.7270 11 1 5.2745 -2.3762 -0.0022 12 1 4.1169 -2.5401 -2.1268 13 1 3.8110 -0.5836 -0.7269 14 6 1.2510 -0.2453 2.4707 15 1 0.1972 -0.1674 2.2033 16 6 1.7682 1.1480 2.8935 17 6 0.7422 1.7990 3.7820 18 6 0.9784 1.5182 5.2768 19 7 1.3545 0.1152 5.5573 20 6 0.5935 -0.8501 4.8014 21 6 1.3988 -1.2231 3.5432 22 1 -0.3634 0.7006 0.7518 23 1 -0.3634 0.3007 -0.9827 24 1 -0.3634 -1.0014 0.2309 25 1 1.8933 -0.5137 -0.8900 26 1 3.0098 1.4850 0.4956 27 1 2.1412 1.7921 -1.0274 28 1 1.3320 2.0782 0.5319 29 1 2.7598 -4.5984 -0.8695 30 1 2.7065 1.0395 3.4377 31 1 1.9269 1.7629 2.0075 32 1 0.7692 2.8764 3.6186 33 1 -0.2456 1.4292 3.5072 34 1 0.0656 1.7518 5.8249 35 1 1.7744 2.1717 5.6338 36 1 2.3455 -0.0258 5.4300 37 1 -0.3634 -0.4168 4.5102 38 1 0.4249 -1.7406 5.4070 39 1 1.0597 -2.1944 3.1832 40 1 2.4533 -1.2970 3.8092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259647029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:00 Heat of formation + Delta-G solvation = -10.293799 kcal Electronic energy + Delta-G solvation = -17249.803038 eV Core-core repulsion = 14870.932032 eV Total energy + Delta-G solvation = -2378.871006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.35474 -36.23231 -32.49322 -31.94808 -31.70957 -27.88444 -26.64328 -25.05886 -24.15804 -22.19074 -20.19237 -19.58560 -18.53641 -16.56289 -15.75492 -14.85545 -14.78379 -14.26623 -13.65274 -13.60753 -13.24604 -12.88713 -12.60431 -12.36017 -12.01179 -11.72455 -11.67681 -11.30038 -11.09166 -10.99751 -10.76255 -10.45790 -10.30582 -10.01718 -9.98957 -9.76587 -9.67745 -9.41233 -8.88829 -8.62365 -8.34820 -7.89888 -6.04590 -3.99526 3.29819 3.40279 3.44117 4.46511 4.67887 5.05398 5.25149 5.33538 5.38964 5.62146 5.71173 5.73376 5.84898 5.91704 5.98214 6.00767 6.05757 6.20816 6.26491 6.28734 6.40024 6.42881 6.58398 6.61182 6.63315 6.68224 6.81845 6.90368 6.95137 7.18402 7.22466 7.28786 7.43583 7.57042 7.61643 7.74626 7.87716 8.57595 9.02310 9.61232 11.07463 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029570 B = 0.010324 C = 0.009003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.692744 B = 2711.516652 C = 3109.231545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.149 4.149 4 C 0.027 3.973 5 H 0.020 0.980 6 C -0.511 4.511 7 H 0.080 0.920 8 C 0.073 3.927 9 N -0.899 5.899 10 Si 0.860 3.140 11 H -0.284 1.284 12 H -0.292 1.292 13 H -0.250 1.250 14 C -0.070 4.070 15 H 0.065 0.935 16 C -0.138 4.138 17 C -0.149 4.149 18 C 0.064 3.936 19 N -0.697 5.697 20 C 0.061 3.939 21 C -0.143 4.143 22 H 0.041 0.959 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.261 0.739 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.340 0.660 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 10.888 5.609 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.111 4.111 3 C -0.206 4.206 4 C 0.008 3.992 5 H 0.038 0.962 6 C -0.548 4.548 7 H 0.098 0.902 8 C -0.129 4.129 9 N -0.537 5.537 10 Si 0.687 3.313 11 H -0.210 1.210 12 H -0.218 1.218 13 H -0.174 1.174 14 C -0.089 4.089 15 H 0.083 0.917 16 C -0.175 4.175 17 C -0.188 4.188 18 C -0.065 4.065 19 N -0.327 5.327 20 C -0.068 4.068 21 C -0.181 4.181 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.179 10.689 6.023 12.461 hybrid contribution 1.306 0.391 -1.547 2.062 sum -0.873 11.080 4.476 11.982 Atomic orbital electron populations 1.21804 0.96402 1.01949 0.98716 1.21492 0.95241 0.93505 1.00874 1.22199 1.00413 0.98383 0.99566 1.19242 0.94383 0.95731 0.89867 0.96223 1.21164 1.24423 0.90699 1.18516 0.90246 1.24981 0.97146 0.94737 0.95990 1.69957 1.39630 1.11874 1.32215 0.87235 0.83734 0.81587 0.78745 1.21035 1.21830 1.17394 1.20152 1.00298 0.92323 0.96098 0.91722 1.21966 0.97597 0.98384 0.99533 1.21936 1.00485 1.00037 0.96333 1.22280 1.00595 0.89483 0.94183 1.59693 1.09873 1.02815 1.60334 1.21823 0.96865 0.94750 0.93380 1.21321 0.99695 1.02139 0.94951 0.93983 0.95145 0.91486 0.92194 0.93242 0.94656 0.93003 0.92932 0.93213 0.90106 0.92884 0.92358 0.92142 0.92307 0.84124 0.92173 0.91779 0.89185 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 7.89 37.15 0.29 -2.19 16 2 C -0.09 -1.89 1.73 -90.63 -0.16 -2.04 16 3 C -0.15 -2.58 7.59 37.16 0.28 -2.30 16 4 C 0.03 0.58 0.90 -91.77 -0.08 0.50 16 5 H 0.02 0.45 6.25 -51.93 -0.32 0.13 16 6 C -0.51 -13.32 7.44 -34.44 -0.26 -13.58 16 7 H 0.08 2.23 5.84 -52.48 -0.31 1.93 16 8 C 0.07 2.02 5.30 -17.82 -0.09 1.93 16 9 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 10 Si 0.86 21.01 25.72 -169.99 -4.37 16.64 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.25 -5.72 5.35 56.52 0.30 -5.42 16 14 C -0.07 -1.29 1.26 -93.20 -0.12 -1.41 16 15 H 0.06 1.21 4.90 -51.93 -0.25 0.96 16 16 C -0.14 -2.16 4.79 -27.17 -0.13 -2.29 16 17 C -0.15 -2.02 5.27 -27.49 -0.14 -2.16 16 18 C 0.06 0.83 6.44 -2.78 -0.02 0.81 16 19 N -0.70 -10.02 6.55 -113.79 -0.74 -10.77 16 20 C 0.06 0.96 6.27 -4.70 -0.03 0.93 16 21 C -0.14 -2.61 4.05 -29.59 -0.12 -2.73 16 22 H 0.04 0.71 6.47 -51.93 -0.34 0.37 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 1.40 7.46 -51.93 -0.39 1.02 16 25 H 0.06 1.37 5.23 -51.93 -0.27 1.10 16 26 H 0.05 0.86 7.03 -51.93 -0.36 0.50 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.81 6.20 -51.93 -0.32 0.48 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.05 0.79 7.44 -51.93 -0.39 0.40 16 31 H 0.08 1.27 3.47 -51.92 -0.18 1.09 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.83 6.66 -51.93 -0.35 0.48 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.34 4.86 7.57 -39.29 -0.30 4.56 16 37 H 0.06 0.93 6.79 -51.93 -0.35 0.58 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.90 5.42 -51.93 -0.28 1.62 16 40 H 0.05 1.00 7.51 -51.93 -0.39 0.61 16 LS Contribution 276.14 15.07 4.16 4.16 Total: -1.00 -27.60 276.14 -7.33 -34.93 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.57 Total: 5.67 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -0.57 Total: -24.54 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.03 Total: -36.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.37 Total: 16.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.60 -7.33 -34.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.631 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds