Wall clock time and date at job start Mon Mar 30 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47121 * 2 1 4 4 C 1.52994 * 109.47421 * 119.99686 * 2 1 3 5 5 H 1.09003 * 109.47408 * 194.84124 * 4 2 1 6 6 C 1.50707 * 109.46999 * 74.84482 * 4 2 1 7 7 H 1.08003 * 119.99939 * 246.32876 * 6 4 2 8 8 C 1.37871 * 120.00028 * 66.32255 * 6 4 2 9 9 N 1.31518 * 120.00036 * 192.41095 * 8 6 4 10 10 Si 1.86797 * 120.00220 * 12.40971 * 8 6 4 11 11 H 1.48500 * 109.47252 * 93.02781 * 10 8 6 12 12 H 1.48506 * 109.47263 * 213.02698 * 10 8 6 13 13 H 1.48501 * 109.47233 * 333.03048 * 10 8 6 14 14 C 1.52999 * 109.47323 * 314.84304 * 4 2 1 15 15 H 1.09003 * 108.96267 * 41.80734 * 14 4 2 16 16 C 1.54514 * 109.04243 * 282.88850 * 14 4 2 17 17 C 1.50534 * 108.86365 * 162.20619 * 16 14 4 18 18 C 1.53915 * 112.93987 * 91.74945 * 17 16 14 19 19 N 1.47934 * 113.33642 * 317.74946 * 18 17 16 20 20 C 1.44302 * 113.64348 * 318.14209 * 19 18 17 21 21 C 1.45880 * 109.04195 * 160.71723 * 14 4 2 22 22 H 1.09001 * 109.47580 * 312.98104 * 1 2 3 23 23 H 1.09000 * 109.47252 * 72.98505 * 1 2 3 24 24 H 1.09003 * 109.47279 * 192.98532 * 1 2 3 25 25 H 1.09000 * 109.47370 * 240.00500 * 2 1 3 26 26 H 1.08997 * 109.47566 * 151.16804 * 3 2 1 27 27 H 1.09001 * 109.47166 * 271.17255 * 3 2 1 28 28 H 1.09006 * 109.47183 * 31.16641 * 3 2 1 29 29 H 0.96992 * 120.00233 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.57202 * 282.02167 * 16 14 4 31 31 H 1.09008 * 109.57324 * 42.39221 * 16 14 4 32 32 H 1.09004 * 108.79076 * 212.64010 * 17 16 14 33 33 H 1.08998 * 108.79217 * 330.85549 * 17 16 14 34 34 H 1.09005 * 108.70826 * 196.75818 * 18 17 16 35 35 H 1.08998 * 108.71313 * 78.74793 * 18 17 16 36 36 H 1.00903 * 110.99911 * 84.09384 * 19 18 17 37 37 H 1.09002 * 109.69684 * 335.68512 * 20 19 18 38 38 H 1.09003 * 109.69892 * 215.09959 * 20 19 18 39 39 H 1.08997 * 108.84560 * 302.88782 * 21 14 4 40 40 H 1.09006 * 108.83740 * 61.24292 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 3.0977 -0.4989 1.3907 6 6 1.8572 -2.2076 1.0809 7 1 1.1611 -2.7409 1.7114 8 6 2.5786 -2.8867 0.1221 9 7 2.2525 -4.1208 -0.1947 10 14 4.0191 -2.0540 -0.7270 11 1 5.2745 -2.3762 -0.0022 12 1 4.1169 -2.5401 -2.1268 13 1 3.8110 -0.5836 -0.7269 14 6 1.2510 -0.2453 2.4707 15 1 0.1972 -0.1674 2.2033 16 6 1.7682 1.1480 2.8935 17 6 0.7422 1.7990 3.7820 18 6 0.9784 1.5182 5.2768 19 7 1.3545 0.1152 5.5573 20 6 0.5935 -0.8501 4.8014 21 6 1.3988 -1.2231 3.5432 22 1 -0.3634 0.7006 0.7518 23 1 -0.3634 0.3007 -0.9827 24 1 -0.3634 -1.0014 0.2309 25 1 1.8933 -0.5137 -0.8900 26 1 3.0098 1.4850 0.4956 27 1 2.1412 1.7921 -1.0274 28 1 1.3320 2.0782 0.5319 29 1 2.7598 -4.5984 -0.8695 30 1 2.7065 1.0395 3.4377 31 1 1.9269 1.7629 2.0075 32 1 0.7692 2.8764 3.6186 33 1 -0.2456 1.4292 3.5072 34 1 0.0656 1.7518 5.8249 35 1 1.7744 2.1717 5.6338 36 1 2.3455 -0.0258 5.4300 37 1 -0.3634 -0.4168 4.5102 38 1 0.4249 -1.7406 5.4070 39 1 1.0597 -2.1944 3.1832 40 1 2.4533 -1.2970 3.8092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259647029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:59 Heat of formation + Delta-G solvation = -27.987797 kcal Electronic energy + Delta-G solvation = -17250.570308 eV Core-core repulsion = 14870.932032 eV Total energy + Delta-G solvation = -2379.638276 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78188 -37.66929 -34.39223 -33.41879 -33.04891 -29.59393 -28.11889 -26.43261 -25.57150 -23.86579 -21.61281 -20.82942 -20.19022 -18.49349 -17.18046 -16.44334 -16.11252 -15.74466 -15.20432 -15.06293 -14.78136 -14.61865 -14.01532 -13.75369 -13.42829 -13.13573 -13.06677 -12.94206 -12.68081 -12.60295 -12.17066 -12.10974 -11.64127 -11.58764 -11.46795 -11.44837 -11.23339 -10.98868 -10.64740 -10.36997 -10.29895 -9.10762 -8.20799 -6.17456 1.32484 1.37856 1.47475 2.40413 3.13797 3.54371 3.84905 4.06664 4.19295 4.29487 4.36258 4.43685 4.45780 4.49785 4.57981 4.73490 4.83472 4.88196 4.94783 4.98393 5.02277 5.08102 5.20306 5.25156 5.29250 5.33494 5.36754 5.42223 5.46926 5.56390 5.64238 5.69198 5.83889 5.90163 6.00001 6.36110 6.50675 6.58380 6.90010 7.45776 8.94542 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029570 B = 0.010324 C = 0.009003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.692744 B = 2711.516652 C = 3109.231545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 C -0.143 4.143 4 C 0.026 3.974 5 H 0.013 0.987 6 C -0.497 4.497 7 H 0.046 0.954 8 C 0.012 3.988 9 N -0.952 5.952 10 Si 0.916 3.084 11 H -0.286 1.286 12 H -0.298 1.298 13 H -0.222 1.222 14 C -0.065 4.065 15 H 0.062 0.938 16 C -0.129 4.129 17 C -0.144 4.144 18 C 0.062 3.938 19 N -0.698 5.698 20 C 0.075 3.925 21 C -0.135 4.135 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.258 0.742 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.341 0.659 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 14.469 6.273 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.116 4.116 3 C -0.200 4.200 4 C 0.007 3.993 5 H 0.031 0.969 6 C -0.535 4.535 7 H 0.064 0.936 8 C -0.184 4.184 9 N -0.593 5.593 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.225 1.225 13 H -0.144 1.144 14 C -0.083 4.083 15 H 0.080 0.920 16 C -0.167 4.167 17 C -0.183 4.183 18 C -0.067 4.067 19 N -0.328 5.328 20 C -0.055 4.055 21 C -0.174 4.174 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.016 14.307 6.704 15.927 hybrid contribution 1.187 -0.773 -1.686 2.202 sum -0.830 13.533 5.018 14.457 Atomic orbital electron populations 1.21725 0.95374 1.00668 1.00447 1.21425 0.96242 0.95495 0.98447 1.22119 1.00914 0.95915 1.01014 1.19252 0.94648 0.92830 0.92567 0.96890 1.21518 1.22233 0.93271 1.16473 0.93647 1.25759 0.99940 0.95285 0.97394 1.70108 1.41462 1.13876 1.33873 0.86323 0.80213 0.82248 0.77068 1.21240 1.22520 1.14385 1.20083 0.99606 0.94204 0.94449 0.92029 1.21872 0.98196 0.96198 1.00393 1.21873 0.99144 1.01269 0.96054 1.22383 1.01777 0.88474 0.94033 1.59690 1.09788 1.03588 1.59733 1.21628 0.96640 0.95311 0.91888 1.21221 0.99385 1.00330 0.96475 0.91580 0.93512 0.94815 0.94918 0.93085 0.93282 0.90568 0.93284 0.93175 0.89380 0.90408 0.92946 0.91195 0.90522 0.84015 0.91688 0.91938 0.93200 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 7.89 71.98 0.57 -3.95 16 2 C -0.10 -3.80 1.73 -10.80 -0.02 -3.82 16 3 C -0.14 -4.38 7.59 71.98 0.55 -3.83 16 4 C 0.03 1.11 0.90 -11.54 -0.01 1.10 16 5 H 0.01 0.58 6.25 -2.39 -0.01 0.57 16 6 C -0.50 -26.90 7.44 25.60 0.19 -26.71 16 7 H 0.05 2.73 5.84 -2.91 -0.02 2.71 16 8 C 0.01 0.70 5.30 84.65 0.45 1.15 16 9 N -0.95 -59.64 13.96 21.45 0.30 -59.35 16 10 Si 0.92 44.03 25.72 68.60 1.76 45.80 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 13 H -0.22 -9.51 5.35 99.48 0.53 -8.98 16 14 C -0.07 -2.32 1.26 -12.46 -0.02 -2.33 16 15 H 0.06 2.23 4.90 -2.39 -0.01 2.22 16 16 C -0.13 -3.62 4.79 30.31 0.15 -3.47 16 17 C -0.14 -3.30 5.27 30.10 0.16 -3.14 16 18 C 0.06 1.37 6.44 86.41 0.56 1.92 16 19 N -0.70 -18.38 6.55 -513.93 -3.36 -21.74 16 20 C 0.08 2.27 6.27 87.12 0.55 2.81 16 21 C -0.14 -4.99 4.05 28.74 0.12 -4.87 16 22 H 0.07 2.04 6.47 -2.39 -0.02 2.03 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.03 1.41 7.46 -2.39 -0.02 1.39 16 25 H 0.03 1.45 5.23 -2.39 -0.01 1.43 16 26 H 0.05 1.56 7.03 -2.39 -0.02 1.54 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.97 6.20 -2.38 -0.01 1.96 16 29 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.05 1.41 7.44 -2.39 -0.02 1.40 16 31 H 0.09 2.36 3.47 -2.38 -0.01 2.35 16 32 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.05 1.28 6.66 -2.39 -0.02 1.27 16 34 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.34 9.00 7.57 -89.69 -0.68 8.32 16 37 H 0.06 1.90 6.79 -2.39 -0.02 1.89 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 2.23 5.42 -2.39 -0.01 2.22 16 40 H 0.04 1.61 7.51 -2.38 -0.02 1.59 16 Total: -1.00 -61.81 276.14 2.10 -59.70 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.17 Total: 20.73 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.23 Total: -45.15 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -3.06 Total: -81.09 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.76 Total: 45.80 kcal Total: -61.81 2.10 -59.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.717 kcal (2) G-P(sol) polarization free energy of solvation -61.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds