Wall clock time and date at job start Mon Mar 30 2020 03:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 H 1.08992 * 110.06774 * 300.62809 * 3 2 1 5 5 C 1.53994 * 109.91960 * 179.41708 * 3 2 1 6 6 H 1.09000 * 110.30284 * 358.34649 * 5 3 2 7 7 C 1.50702 * 110.30385 * 120.50513 * 5 3 2 8 8 H 1.07997 * 120.00646 * 1.03930 * 7 5 3 9 9 C 1.37885 * 119.99545 * 181.03397 * 7 5 3 10 10 N 1.31513 * 120.00244 * 6.94227 * 9 7 5 11 11 Si 1.86804 * 119.99709 * 186.94153 * 9 7 5 12 12 H 1.48505 * 109.47054 * 94.98014 * 11 9 7 13 13 H 1.48497 * 109.47006 * 214.97923 * 11 9 7 14 14 H 1.48495 * 109.47036 * 334.98424 * 11 9 7 15 15 C 1.54592 * 105.14482 * 239.42654 * 5 3 2 16 16 C 1.54942 * 102.91944 * 338.04034 * 15 5 3 17 17 N 1.47904 * 109.91413 * 61.83258 * 3 2 1 18 18 C 1.46901 * 111.00133 * 265.19352 * 17 3 2 19 19 C 1.53002 * 109.47377 * 176.85386 * 18 17 3 20 20 C 1.53003 * 109.47101 * 174.94948 * 19 18 17 21 21 C 1.53001 * 109.47077 * 294.95342 * 19 18 17 22 22 H 1.09005 * 109.46439 * 172.48728 * 1 2 3 23 23 H 1.09000 * 109.47011 * 292.48006 * 1 2 3 24 24 H 1.08998 * 109.47362 * 52.48733 * 1 2 3 25 25 H 1.08993 * 109.47226 * 240.00223 * 2 1 3 26 26 H 1.09003 * 109.47057 * 120.00238 * 2 1 3 27 27 H 0.96991 * 119.99894 * 180.02562 * 10 9 7 28 28 H 1.09000 * 110.72025 * 219.68580 * 15 5 3 29 29 H 1.09000 * 110.72424 * 96.40168 * 15 5 3 30 30 H 1.08991 * 110.67176 * 278.98149 * 16 15 5 31 31 H 1.08996 * 110.66457 * 155.84599 * 16 15 5 32 32 H 1.09007 * 109.46674 * 56.85910 * 18 17 3 33 33 H 1.08999 * 109.47337 * 296.86056 * 18 17 3 34 34 H 1.09002 * 109.46622 * 54.95223 * 19 18 17 35 35 H 1.08999 * 109.46708 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.46922 * 300.00097 * 20 19 18 37 37 H 1.08999 * 109.46735 * 60.00324 * 20 19 18 38 38 H 1.08999 * 109.46560 * 175.68979 * 21 19 18 39 39 H 1.09004 * 109.47000 * 295.68607 * 21 19 18 40 40 H 1.08997 * 109.47109 * 55.68850 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6729 1.9690 -0.8809 5 6 3.5798 1.4546 0.0147 6 1 3.9657 0.4359 0.0514 7 6 4.1088 2.1720 -1.2004 8 1 3.4226 2.6006 -1.9159 9 6 5.4689 2.2813 -1.3988 10 7 6.3024 1.6453 -0.6048 11 14 6.1276 3.3328 -2.7952 12 1 6.4508 4.6890 -2.2838 13 1 7.3551 2.7072 -3.3494 14 1 5.1005 3.4381 -3.8625 15 6 3.9654 2.2211 1.3007 16 6 2.6944 3.0547 1.6014 17 7 1.5890 2.1363 1.2259 18 6 0.3461 2.8805 0.9827 19 6 -0.1303 3.5187 2.2891 20 6 -1.3529 4.3959 2.0121 21 6 -0.5058 2.4205 3.2860 22 1 -0.3632 -1.0189 -0.1344 23 1 -0.3633 0.3929 0.9496 24 1 -0.3634 0.6258 -0.8151 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 7.2592 1.7225 -0.7442 28 1 4.8202 2.8728 1.1195 29 1 4.1736 1.5276 2.1154 30 1 2.6711 3.9555 0.9883 31 1 2.6417 3.3073 2.6603 32 1 -0.4190 2.1985 0.6114 33 1 0.5281 3.6599 0.2427 34 1 0.6690 4.1309 2.7069 35 1 -1.6919 4.8509 2.9427 36 1 -1.0853 5.1783 1.3019 37 1 -2.1521 3.7837 1.5942 38 1 -0.7719 2.8726 4.2414 39 1 -1.3556 1.8561 2.9018 40 1 0.3426 1.7503 3.4249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259836357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:29 Heat of formation + Delta-G solvation = -24.476075 kcal Electronic energy + Delta-G solvation = -16740.035594 eV Core-core repulsion = 14360.549598 eV Total energy + Delta-G solvation = -2379.485996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.75355 -35.47072 -32.93774 -32.22920 -29.94538 -27.32625 -26.88891 -25.49019 -23.65301 -22.07704 -20.22490 -19.27010 -18.78919 -16.25233 -15.30006 -14.89253 -14.59681 -14.15906 -14.01099 -13.42602 -12.87150 -12.62837 -12.30288 -12.19542 -12.10828 -11.71038 -11.53940 -11.20562 -10.99825 -10.92536 -10.80394 -10.61800 -10.52449 -10.27445 -10.16753 -10.07000 -9.74393 -9.63278 -9.05488 -8.76143 -8.34907 -7.58381 -6.01374 -4.03703 3.29262 3.36898 3.39691 4.42936 4.72049 5.10512 5.21615 5.30791 5.43390 5.67673 5.73296 5.79305 5.84738 5.87830 5.92094 6.00576 6.05364 6.11402 6.22251 6.27006 6.34456 6.38887 6.46530 6.52608 6.54818 6.59942 6.67958 6.79913 6.90044 7.01118 7.18838 7.30300 7.66948 7.71476 7.91362 7.95749 7.99585 8.49051 8.99265 9.59618 11.07706 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.007820 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.484339 B = 3579.531108 C = 3839.586711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C 0.071 3.929 4 H 0.042 0.958 5 C 0.047 3.953 6 H 0.038 0.962 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.064 3.936 10 N -0.886 5.886 11 Si 0.885 3.115 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.275 1.275 15 C -0.100 4.100 16 C 0.041 3.959 17 N -0.512 5.512 18 C 0.045 3.955 19 C -0.094 4.094 20 C -0.145 4.145 21 C -0.136 4.136 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.260 0.740 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 1.721 4.740 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.036 4.036 4 H 0.060 0.940 5 C 0.028 3.972 6 H 0.056 0.944 7 C -0.551 4.551 8 H 0.070 0.930 9 C -0.138 4.138 10 N -0.524 5.524 11 Si 0.713 3.287 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.138 4.138 16 C -0.087 4.087 17 N -0.236 5.236 18 C -0.084 4.084 19 C -0.112 4.112 20 C -0.203 4.203 21 C -0.193 4.193 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.307 1.308 5.174 12.503 hybrid contribution 0.598 1.299 -1.472 2.052 sum -10.709 2.607 3.702 11.627 Atomic orbital electron populations 1.21884 0.97498 0.99947 1.01259 1.21458 0.94212 0.97065 1.01290 1.22610 0.98237 0.93033 0.89752 0.94002 1.19497 0.87461 0.96987 0.93266 0.94395 1.21239 0.91417 1.35503 1.06985 0.92962 1.24948 0.97120 0.95536 0.96165 1.69987 1.02543 1.41258 1.38611 0.86692 0.78577 0.80768 0.82663 1.20788 1.21234 1.19971 1.22406 0.95284 0.98168 0.97992 1.23151 0.92366 0.94860 0.98324 1.64637 1.02107 1.24997 1.31854 1.22455 0.94070 0.96403 0.95430 1.21108 0.97153 0.96645 0.96340 1.21823 0.98011 0.99462 1.01019 1.21706 1.01701 0.98553 0.97354 0.94119 0.92196 0.93840 0.92347 0.92095 0.93052 0.91161 0.94309 0.94674 0.92404 0.90789 0.95603 0.91436 0.93009 0.93078 0.92954 0.94062 0.93542 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.43 37.16 0.31 -1.97 16 2 C -0.10 -1.89 5.42 -26.73 -0.14 -2.04 16 3 C 0.07 1.50 2.32 -66.64 -0.15 1.34 16 4 H 0.04 0.93 7.01 -51.93 -0.36 0.57 16 5 C 0.05 1.16 2.44 -90.42 -0.22 0.94 16 6 H 0.04 1.04 7.69 -51.93 -0.40 0.64 16 7 C -0.51 -14.03 8.46 -34.44 -0.29 -14.32 16 8 H 0.05 1.44 7.35 -52.49 -0.39 1.05 16 9 C 0.06 1.78 4.98 -17.82 -0.09 1.69 16 10 N -0.89 -25.47 12.61 55.43 0.70 -24.77 16 11 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.10 -2.34 6.25 -24.87 -0.16 -2.50 16 16 C 0.04 0.81 5.65 -1.89 -0.01 0.80 16 17 N -0.51 -9.59 4.08 -222.57 -0.91 -10.50 16 18 C 0.05 0.73 3.68 -3.82 -0.01 0.71 16 19 C -0.09 -1.29 2.87 -90.62 -0.26 -1.55 16 20 C -0.15 -1.68 9.19 37.16 0.34 -1.34 16 21 C -0.14 -1.76 9.13 37.16 0.34 -1.42 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 24 H 0.04 0.65 7.84 -51.93 -0.41 0.24 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.07 1.82 7.07 -51.93 -0.37 1.45 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.73 7.92 -51.93 -0.41 0.32 16 31 H 0.06 1.05 7.58 -51.93 -0.39 0.66 16 32 H 0.07 1.14 5.18 -51.92 -0.27 0.87 16 33 H 0.03 0.45 7.99 -51.93 -0.41 0.03 16 34 H 0.07 0.99 6.87 -51.93 -0.36 0.63 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.04 7.64 -51.93 -0.40 0.64 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -27.47 304.69 -8.43 -35.90 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.45 Total: -1.88 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.35 Total: -19.64 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.21 Total: -35.26 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.47 -8.43 -35.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259836357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.427 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds