Wall clock time and date at job start Mon Mar 30 2020 03:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 H 1.08992 * 110.06774 * 300.62809 * 3 2 1 5 5 C 1.53994 * 109.91960 * 179.41708 * 3 2 1 6 6 H 1.09000 * 110.30284 * 358.34649 * 5 3 2 7 7 C 1.50702 * 110.30385 * 120.50513 * 5 3 2 8 8 H 1.07997 * 120.00646 * 1.03930 * 7 5 3 9 9 C 1.37885 * 119.99545 * 181.03397 * 7 5 3 10 10 N 1.31513 * 120.00244 * 6.94227 * 9 7 5 11 11 Si 1.86804 * 119.99709 * 186.94153 * 9 7 5 12 12 H 1.48505 * 109.47054 * 94.98014 * 11 9 7 13 13 H 1.48497 * 109.47006 * 214.97923 * 11 9 7 14 14 H 1.48495 * 109.47036 * 334.98424 * 11 9 7 15 15 C 1.54592 * 105.14482 * 239.42654 * 5 3 2 16 16 C 1.54942 * 102.91944 * 338.04034 * 15 5 3 17 17 N 1.47904 * 109.91413 * 61.83258 * 3 2 1 18 18 C 1.46901 * 111.00133 * 265.19352 * 17 3 2 19 19 C 1.53002 * 109.47377 * 176.85386 * 18 17 3 20 20 C 1.53003 * 109.47101 * 174.94948 * 19 18 17 21 21 C 1.53001 * 109.47077 * 294.95342 * 19 18 17 22 22 H 1.09005 * 109.46439 * 172.48728 * 1 2 3 23 23 H 1.09000 * 109.47011 * 292.48006 * 1 2 3 24 24 H 1.08998 * 109.47362 * 52.48733 * 1 2 3 25 25 H 1.08993 * 109.47226 * 240.00223 * 2 1 3 26 26 H 1.09003 * 109.47057 * 120.00238 * 2 1 3 27 27 H 0.96991 * 119.99894 * 180.02562 * 10 9 7 28 28 H 1.09000 * 110.72025 * 219.68580 * 15 5 3 29 29 H 1.09000 * 110.72424 * 96.40168 * 15 5 3 30 30 H 1.08991 * 110.67176 * 278.98149 * 16 15 5 31 31 H 1.08996 * 110.66457 * 155.84599 * 16 15 5 32 32 H 1.09007 * 109.46674 * 56.85910 * 18 17 3 33 33 H 1.08999 * 109.47337 * 296.86056 * 18 17 3 34 34 H 1.09002 * 109.46622 * 54.95223 * 19 18 17 35 35 H 1.08999 * 109.46708 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.46922 * 300.00097 * 20 19 18 37 37 H 1.08999 * 109.46735 * 60.00324 * 20 19 18 38 38 H 1.08999 * 109.46560 * 175.68979 * 21 19 18 39 39 H 1.09004 * 109.47000 * 295.68607 * 21 19 18 40 40 H 1.08997 * 109.47109 * 55.68850 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6729 1.9690 -0.8809 5 6 3.5798 1.4546 0.0147 6 1 3.9657 0.4359 0.0514 7 6 4.1088 2.1720 -1.2004 8 1 3.4226 2.6006 -1.9159 9 6 5.4689 2.2813 -1.3988 10 7 6.3024 1.6453 -0.6048 11 14 6.1276 3.3328 -2.7952 12 1 6.4508 4.6890 -2.2838 13 1 7.3551 2.7072 -3.3494 14 1 5.1005 3.4381 -3.8625 15 6 3.9654 2.2211 1.3007 16 6 2.6944 3.0547 1.6014 17 7 1.5890 2.1363 1.2259 18 6 0.3461 2.8805 0.9827 19 6 -0.1303 3.5187 2.2891 20 6 -1.3529 4.3959 2.0121 21 6 -0.5058 2.4205 3.2860 22 1 -0.3632 -1.0189 -0.1344 23 1 -0.3633 0.3929 0.9496 24 1 -0.3634 0.6258 -0.8151 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 7.2592 1.7225 -0.7442 28 1 4.8202 2.8728 1.1195 29 1 4.1736 1.5276 2.1154 30 1 2.6711 3.9555 0.9883 31 1 2.6417 3.3073 2.6603 32 1 -0.4190 2.1985 0.6114 33 1 0.5281 3.6599 0.2427 34 1 0.6690 4.1309 2.7069 35 1 -1.6919 4.8509 2.9427 36 1 -1.0853 5.1783 1.3019 37 1 -2.1521 3.7837 1.5942 38 1 -0.7719 2.8726 4.2414 39 1 -1.3556 1.8561 2.9018 40 1 0.3426 1.7503 3.4249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259836357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:28 Heat of formation + Delta-G solvation = -39.223681 kcal Electronic energy + Delta-G solvation = -16740.675098 eV Core-core repulsion = 14360.549598 eV Total energy + Delta-G solvation = -2380.125500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36204 -36.79410 -34.81096 -33.82058 -31.66254 -29.03472 -27.86099 -27.16952 -25.34751 -23.53880 -21.91603 -20.79441 -20.31663 -18.28310 -16.89858 -16.47889 -16.35396 -15.63651 -15.45595 -14.70954 -14.34757 -14.15344 -13.96810 -13.54777 -13.29090 -13.12539 -12.99859 -12.89891 -12.58748 -12.49955 -12.44644 -12.10697 -12.01301 -11.81327 -11.71600 -11.58006 -11.40595 -11.00750 -10.86424 -10.78551 -10.47899 -9.17312 -8.15526 -6.24791 1.36657 1.38104 1.47963 2.39769 3.14561 3.22635 3.94236 4.06684 4.15341 4.28782 4.33076 4.42492 4.50407 4.56655 4.69984 4.73544 4.77446 4.80288 4.87437 4.92329 5.02040 5.10215 5.13040 5.19354 5.24038 5.31350 5.32439 5.34768 5.39877 5.52634 5.58875 5.60504 5.63344 5.81595 5.90227 6.07999 6.40615 6.44107 6.86383 7.42077 8.93360 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.007820 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.484339 B = 3579.531108 C = 3839.586711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.079 3.921 4 H 0.027 0.973 5 C 0.040 3.960 6 H 0.003 0.997 7 C -0.529 4.529 8 H 0.046 0.954 9 C 0.017 3.983 10 N -0.916 5.916 11 Si 0.948 3.052 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.269 1.269 15 C -0.096 4.096 16 C 0.053 3.947 17 N -0.503 5.503 18 C 0.044 3.956 19 C -0.091 4.091 20 C -0.141 4.141 21 C -0.131 4.131 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.261 0.739 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.013 0.987 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 2.397 5.027 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.138 4.138 3 C -0.029 4.029 4 H 0.045 0.955 5 C 0.021 3.979 6 H 0.021 0.979 7 C -0.567 4.567 8 H 0.064 0.936 9 C -0.182 4.182 10 N -0.555 5.555 11 Si 0.773 3.227 12 H -0.202 1.202 13 H -0.207 1.207 14 H -0.194 1.194 15 C -0.135 4.135 16 C -0.075 4.075 17 N -0.227 5.227 18 C -0.084 4.084 19 C -0.110 4.110 20 C -0.198 4.198 21 C -0.189 4.189 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.295 1.987 5.462 14.510 hybrid contribution 1.228 1.061 -1.554 2.247 sum -12.067 3.048 3.908 13.045 Atomic orbital electron populations 1.21781 0.94438 1.01549 1.01748 1.21390 0.96844 0.94986 1.00536 1.22417 0.95482 0.94855 0.90151 0.95526 1.19466 0.90374 0.94823 0.93226 0.97856 1.21524 0.91761 1.35699 1.07741 0.93596 1.25690 0.97397 0.96546 0.98591 1.70099 1.02758 1.42397 1.40234 0.85703 0.77977 0.79163 0.79821 1.20178 1.20734 1.19399 1.22239 0.95977 0.97934 0.97307 1.23019 0.91028 0.93885 0.99560 1.64694 1.02618 1.25002 1.30397 1.22579 0.92798 0.96148 0.96843 1.21096 0.97928 0.97013 0.94945 1.21779 0.97036 0.99110 1.01904 1.21657 1.01242 0.97993 0.97971 0.91971 0.91535 0.93460 0.93401 0.92659 0.92971 0.94160 0.94522 0.95675 0.90001 0.89543 0.96852 0.92359 0.91403 0.93327 0.91998 0.92410 0.92523 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.43 71.98 0.61 -3.31 16 2 C -0.10 -3.65 5.42 30.60 0.17 -3.48 16 3 C 0.08 3.34 2.32 45.06 0.10 3.45 16 4 H 0.03 1.20 7.01 -2.39 -0.02 1.18 16 5 C 0.04 2.06 2.44 -10.66 -0.03 2.04 16 6 H 0.00 0.19 7.69 -2.39 -0.02 0.17 16 7 C -0.53 -29.73 8.46 25.60 0.22 -29.51 16 8 H 0.05 2.58 7.35 -2.91 -0.02 2.56 16 9 C 0.02 0.96 4.98 84.66 0.42 1.38 16 10 N -0.92 -54.09 12.61 21.45 0.27 -53.82 16 11 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 C -0.10 -4.63 6.25 31.80 0.20 -4.43 16 16 C 0.05 2.10 5.65 86.65 0.49 2.59 16 17 N -0.50 -18.47 4.08 -858.08 -3.50 -21.97 16 18 C 0.04 1.36 3.68 86.30 0.32 1.68 16 19 C -0.09 -2.27 2.87 -10.79 -0.03 -2.30 16 20 C -0.14 -2.80 9.19 71.98 0.66 -2.14 16 21 C -0.13 -3.01 9.13 71.98 0.66 -2.35 16 22 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.07 1.81 6.58 -2.39 -0.02 1.79 16 24 H 0.05 1.31 7.84 -2.39 -0.02 1.29 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.04 2.15 7.07 -2.39 -0.02 2.14 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.02 1.05 7.92 -2.39 -0.02 1.03 16 31 H 0.08 2.88 7.58 -2.39 -0.02 2.86 16 32 H 0.09 2.44 5.18 -2.38 -0.01 2.43 16 33 H 0.01 0.44 7.99 -2.39 -0.02 0.42 16 34 H 0.06 1.57 6.87 -2.39 -0.02 1.55 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.05 1.38 7.64 -2.39 -0.02 1.36 16 Total: -1.00 -59.85 304.69 3.55 -56.30 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.96 Total: 9.61 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 3.78 Total: -36.40 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -3.23 Total: -75.79 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -59.85 3.55 -56.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259836357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.080 kcal (2) G-P(sol) polarization free energy of solvation -59.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds