Wall clock time and date at job start Mon Mar 30 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47191 * 2 1 4 4 H 1.09003 * 109.46827 * 307.28785 * 3 2 1 5 5 C 1.53002 * 109.46894 * 187.29311 * 3 2 1 6 6 C 1.50696 * 109.47186 * 65.96648 * 5 3 2 7 7 H 1.08004 * 120.00180 * 359.97438 * 6 5 3 8 8 C 1.37879 * 119.99767 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00040 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99916 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46735 * 90.00274 * 10 8 6 12 12 H 1.48498 * 109.47329 * 209.99826 * 10 8 6 13 13 H 1.48497 * 109.47178 * 330.00345 * 10 8 6 14 14 C 1.52998 * 109.47255 * 67.29231 * 3 2 1 15 15 H 1.08997 * 109.46289 * 172.43665 * 14 3 2 16 16 C 1.53037 * 109.46237 * 52.46132 * 14 3 2 17 17 C 1.53119 * 109.27747 * 180.80410 * 16 14 3 18 18 C 1.53119 * 109.15914 * 57.65810 * 17 16 14 19 19 C 1.53034 * 109.27943 * 302.34783 * 18 17 16 20 20 N 1.46837 * 109.52863 * 59.17655 * 19 18 17 21 21 C 1.46903 * 111.00507 * 174.16108 * 20 19 18 22 22 H 1.09008 * 109.47146 * 295.13924 * 1 2 3 23 23 H 1.08996 * 109.47636 * 175.14006 * 1 2 3 24 24 H 1.08998 * 109.47326 * 55.13715 * 1 2 3 25 25 H 1.08994 * 109.47068 * 120.00554 * 2 1 3 26 26 H 1.09003 * 109.46629 * 240.00249 * 2 1 3 27 27 H 1.08998 * 109.46692 * 185.96621 * 5 3 2 28 28 H 1.09000 * 109.46823 * 305.96620 * 5 3 2 29 29 H 0.97001 * 119.99544 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.50423 * 300.74984 * 16 14 3 31 31 H 1.09002 * 109.49884 * 60.87078 * 16 14 3 32 32 H 1.08997 * 109.52403 * 297.75478 * 17 16 14 33 33 H 1.08996 * 109.57331 * 177.59432 * 17 16 14 34 34 H 1.09001 * 109.50322 * 182.40435 * 18 17 16 35 35 H 1.08999 * 109.53329 * 62.30653 * 18 17 16 36 36 H 1.09011 * 109.45998 * 299.15870 * 19 18 17 37 37 H 1.09002 * 109.45676 * 179.19236 * 19 18 17 38 38 H 1.08997 * 109.46960 * 186.91651 * 21 20 19 39 39 H 1.08993 * 109.46889 * 306.92201 * 21 20 19 40 40 H 1.09005 * 109.46743 * 66.91698 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 1.9926 -0.8176 5 6 3.5590 1.4463 -0.1831 6 6 3.9010 0.9244 -1.5548 7 1 3.1136 0.6199 -2.2285 8 6 5.2190 0.8345 -1.9494 9 7 6.1779 1.2038 -1.1285 10 14 5.6430 0.1868 -3.6495 11 1 5.6908 1.3168 -4.6119 12 1 6.9671 -0.4841 -3.6077 13 1 4.6080 -0.7870 -4.0805 14 6 1.6851 2.1090 1.3307 15 1 2.1622 3.0874 1.3855 16 6 2.1789 1.2355 2.4862 17 6 1.8038 1.8963 3.8155 18 6 0.2866 2.0958 3.8671 19 6 -0.1525 2.9442 2.6715 20 7 0.2283 2.2691 1.4244 21 6 -0.2988 2.9860 0.2555 22 1 -0.3634 0.4366 0.9304 23 1 -0.3634 -1.0239 -0.0871 24 1 -0.3634 0.5874 -0.8432 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.9351 2.4639 -0.0774 28 1 4.0177 0.8090 0.5729 29 1 7.1051 1.1409 -1.4063 30 1 1.7126 0.2523 2.4242 31 1 3.2620 1.1298 2.4252 32 1 2.3012 2.8630 3.8949 33 1 2.1155 1.2574 4.6417 34 1 0.0177 2.6047 4.7928 35 1 -0.2100 1.1263 3.8273 36 1 0.3333 3.9189 2.7199 37 1 -1.2342 3.0760 2.6976 38 1 -0.1087 2.4019 -0.6450 39 1 -1.3723 3.1331 0.3733 40 1 0.1936 3.9548 0.1710 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260322311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:16 Heat of formation + Delta-G solvation = -16.872175 kcal Electronic energy + Delta-G solvation = -16903.708653 eV Core-core repulsion = 14524.552387 eV Total energy + Delta-G solvation = -2379.156266 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44524 -35.14629 -33.30478 -32.39288 -30.01345 -28.79660 -26.47779 -24.84614 -22.90675 -21.97509 -21.78428 -19.80387 -18.16674 -16.45359 -15.27002 -15.01274 -14.58739 -14.36244 -14.14486 -13.69448 -12.85371 -12.72447 -12.35988 -12.30647 -12.24539 -11.84468 -11.69204 -11.42250 -10.98581 -10.95435 -10.72790 -10.62189 -10.49945 -10.28321 -10.13972 -9.89485 -9.68321 -9.22125 -9.03398 -8.83216 -8.28536 -7.73946 -5.95081 -3.95706 3.34339 3.40780 3.44313 4.26826 4.50809 5.06822 5.12506 5.22253 5.40314 5.43672 5.62543 5.71749 5.75705 5.81839 5.89871 5.94257 6.03500 6.11105 6.13711 6.20156 6.28234 6.28842 6.36728 6.49018 6.59667 6.69740 6.76473 6.86496 6.98641 7.15555 7.20867 7.38228 7.53485 7.57422 7.74212 7.90471 8.05789 8.50310 9.10769 9.67400 11.16324 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037053 B = 0.007481 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.501591 B = 3741.749472 C = 4052.582133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 C -0.077 4.077 4 H 0.058 0.942 5 C 0.029 3.971 6 C -0.511 4.511 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.888 3.112 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.091 3.909 15 H 0.033 0.967 16 C -0.114 4.114 17 C -0.122 4.122 18 C -0.114 4.114 19 C 0.052 3.948 20 N -0.528 5.528 21 C 0.018 3.982 22 H 0.091 0.909 23 H 0.025 0.975 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.010 0.990 28 H 0.019 0.981 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 1.925 7.603 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.141 4.141 3 C -0.095 4.095 4 H 0.077 0.923 5 C -0.009 4.009 6 C -0.550 4.550 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.016 4.016 15 H 0.051 0.949 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.076 4.076 20 N -0.252 5.252 21 C -0.130 4.130 22 H 0.109 0.891 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.685 1.478 7.628 14.032 hybrid contribution 0.784 0.571 -1.022 1.409 sum -10.901 2.048 6.605 12.909 Atomic orbital electron populations 1.22231 0.97202 0.98913 1.03496 1.21438 0.94348 0.96847 1.01502 1.21373 0.99572 0.95281 0.93304 0.92343 1.19142 0.88163 0.96789 0.96789 1.21249 0.91700 1.42069 0.99955 0.92649 1.25009 0.96680 0.95760 0.97048 1.69967 0.99606 1.48520 1.35563 0.86658 0.77722 0.79068 0.84940 1.20820 1.21326 1.19897 1.21787 0.85263 0.97524 0.97035 0.94877 1.21741 1.01450 0.99468 0.92468 1.21617 0.95533 1.00567 0.98292 1.21555 0.96523 1.00492 0.96584 1.22087 0.99638 0.95205 0.90649 1.62174 1.13277 1.48463 1.01307 1.22517 0.98826 0.96605 0.95024 0.89065 0.95635 0.94318 0.92911 0.92069 0.97135 0.96277 0.93158 0.90776 0.90801 0.92719 0.92318 0.92380 0.91356 0.95572 0.91532 0.89939 0.92393 0.96154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.44 37.16 0.31 -2.34 16 2 C -0.10 -2.01 4.98 -26.73 -0.13 -2.15 16 3 C -0.08 -1.57 1.56 -90.62 -0.14 -1.71 16 4 H 0.06 1.23 5.94 -51.93 -0.31 0.92 16 5 C 0.03 0.73 4.10 -27.88 -0.11 0.61 16 6 C -0.51 -14.34 8.31 -34.44 -0.29 -14.63 16 7 H 0.06 1.52 7.16 -52.48 -0.38 1.15 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 10 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.09 1.61 1.57 -67.72 -0.11 1.51 16 15 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 16 C -0.11 -1.88 4.63 -26.65 -0.12 -2.00 16 17 C -0.12 -1.67 6.00 -26.61 -0.16 -1.83 16 18 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 19 C 0.05 0.68 5.46 -3.84 -0.02 0.66 16 20 N -0.53 -7.92 1.91 -234.93 -0.45 -8.37 16 21 C 0.02 0.26 8.29 60.07 0.50 0.76 16 22 H 0.09 1.46 5.55 -51.92 -0.29 1.17 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.04 0.62 6.52 -51.93 -0.34 0.28 16 25 H 0.05 1.01 5.87 -51.93 -0.31 0.71 16 26 H 0.06 1.32 6.84 -51.93 -0.36 0.96 16 27 H 0.01 0.29 8.13 -51.93 -0.42 -0.14 16 28 H 0.02 0.51 6.95 -51.93 -0.36 0.15 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.07 1.23 6.12 -51.93 -0.32 0.91 16 31 H 0.07 1.36 6.83 -51.93 -0.35 1.00 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.08 1.26 4.27 -51.93 -0.22 1.04 16 39 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 40 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 290.66 15.07 4.38 4.38 Total: -1.00 -28.95 290.66 -7.89 -36.84 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.00 Total: -2.23 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -0.53 Total: -21.17 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.29 Total: -34.65 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.95 -7.89 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.965 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds