Wall clock time and date at job start Mon Mar 30 2020 03:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47191 * 2 1 4 4 H 1.09003 * 109.46827 * 307.28785 * 3 2 1 5 5 C 1.53002 * 109.46894 * 187.29311 * 3 2 1 6 6 C 1.50696 * 109.47186 * 65.96648 * 5 3 2 7 7 H 1.08004 * 120.00180 * 359.97438 * 6 5 3 8 8 C 1.37879 * 119.99767 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00040 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99916 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46735 * 90.00274 * 10 8 6 12 12 H 1.48498 * 109.47329 * 209.99826 * 10 8 6 13 13 H 1.48497 * 109.47178 * 330.00345 * 10 8 6 14 14 C 1.52998 * 109.47255 * 67.29231 * 3 2 1 15 15 H 1.08997 * 109.46289 * 172.43665 * 14 3 2 16 16 C 1.53037 * 109.46237 * 52.46132 * 14 3 2 17 17 C 1.53119 * 109.27747 * 180.80410 * 16 14 3 18 18 C 1.53119 * 109.15914 * 57.65810 * 17 16 14 19 19 C 1.53034 * 109.27943 * 302.34783 * 18 17 16 20 20 N 1.46837 * 109.52863 * 59.17655 * 19 18 17 21 21 C 1.46903 * 111.00507 * 174.16108 * 20 19 18 22 22 H 1.09008 * 109.47146 * 295.13924 * 1 2 3 23 23 H 1.08996 * 109.47636 * 175.14006 * 1 2 3 24 24 H 1.08998 * 109.47326 * 55.13715 * 1 2 3 25 25 H 1.08994 * 109.47068 * 120.00554 * 2 1 3 26 26 H 1.09003 * 109.46629 * 240.00249 * 2 1 3 27 27 H 1.08998 * 109.46692 * 185.96621 * 5 3 2 28 28 H 1.09000 * 109.46823 * 305.96620 * 5 3 2 29 29 H 0.97001 * 119.99544 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.50423 * 300.74984 * 16 14 3 31 31 H 1.09002 * 109.49884 * 60.87078 * 16 14 3 32 32 H 1.08997 * 109.52403 * 297.75478 * 17 16 14 33 33 H 1.08996 * 109.57331 * 177.59432 * 17 16 14 34 34 H 1.09001 * 109.50322 * 182.40435 * 18 17 16 35 35 H 1.08999 * 109.53329 * 62.30653 * 18 17 16 36 36 H 1.09011 * 109.45998 * 299.15870 * 19 18 17 37 37 H 1.09002 * 109.45676 * 179.19236 * 19 18 17 38 38 H 1.08997 * 109.46960 * 186.91651 * 21 20 19 39 39 H 1.08993 * 109.46889 * 306.92201 * 21 20 19 40 40 H 1.09005 * 109.46743 * 66.91698 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 1.9926 -0.8176 5 6 3.5590 1.4463 -0.1831 6 6 3.9010 0.9244 -1.5548 7 1 3.1136 0.6199 -2.2285 8 6 5.2190 0.8345 -1.9494 9 7 6.1779 1.2038 -1.1285 10 14 5.6430 0.1868 -3.6495 11 1 5.6908 1.3168 -4.6119 12 1 6.9671 -0.4841 -3.6077 13 1 4.6080 -0.7870 -4.0805 14 6 1.6851 2.1090 1.3307 15 1 2.1622 3.0874 1.3855 16 6 2.1789 1.2355 2.4862 17 6 1.8038 1.8963 3.8155 18 6 0.2866 2.0958 3.8671 19 6 -0.1525 2.9442 2.6715 20 7 0.2283 2.2691 1.4244 21 6 -0.2988 2.9860 0.2555 22 1 -0.3634 0.4366 0.9304 23 1 -0.3634 -1.0239 -0.0871 24 1 -0.3634 0.5874 -0.8432 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.9351 2.4639 -0.0774 28 1 4.0177 0.8090 0.5729 29 1 7.1051 1.1409 -1.4063 30 1 1.7126 0.2523 2.4242 31 1 3.2620 1.1298 2.4252 32 1 2.3012 2.8630 3.8949 33 1 2.1155 1.2574 4.6417 34 1 0.0177 2.6047 4.7928 35 1 -0.2100 1.1263 3.8273 36 1 0.3333 3.9189 2.7199 37 1 -1.2342 3.0760 2.6976 38 1 -0.1087 2.4019 -0.6450 39 1 -1.3723 3.1331 0.3733 40 1 0.1936 3.9548 0.1710 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260322311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:15 Heat of formation + Delta-G solvation = -32.057489 kcal Electronic energy + Delta-G solvation = -16904.367137 eV Core-core repulsion = 14524.552387 eV Total energy + Delta-G solvation = -2379.814751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79234 -36.71230 -34.71820 -34.24957 -31.42153 -30.53437 -27.78554 -26.57699 -24.28061 -23.61397 -23.22484 -21.06192 -19.68536 -18.56198 -16.70941 -16.58434 -16.06942 -15.94949 -15.40511 -14.93906 -14.36749 -14.23711 -13.97561 -13.91368 -13.64899 -13.31028 -13.18362 -12.86789 -12.62854 -12.47419 -12.32129 -12.17907 -12.05010 -11.73154 -11.57371 -11.39428 -11.21793 -10.96149 -10.82132 -10.58634 -10.48384 -9.00702 -8.17719 -6.26599 1.38336 1.39368 1.50534 2.41020 3.05882 3.15332 3.88680 3.96538 4.03495 4.20673 4.40166 4.44176 4.52527 4.58375 4.64864 4.69069 4.73435 4.81662 4.89365 4.97954 5.04600 5.09425 5.13071 5.14302 5.22941 5.29734 5.34091 5.43561 5.47444 5.50248 5.55878 5.62625 5.83145 5.92123 5.95379 6.19538 6.29143 6.37352 6.89395 7.41288 8.94179 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037053 B = 0.007481 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.501591 B = 3741.749472 C = 4052.582133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.067 4.067 4 H 0.052 0.948 5 C 0.038 3.962 6 C -0.528 4.528 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.959 3.041 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.101 3.899 15 H 0.010 0.990 16 C -0.111 4.111 17 C -0.119 4.119 18 C -0.108 4.108 19 C 0.049 3.951 20 N -0.525 5.525 21 C 0.017 3.983 22 H 0.101 0.899 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.051 0.949 26 H 0.034 0.966 27 H -0.024 1.024 28 H -0.005 1.005 29 H 0.261 0.739 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 1.592 7.858 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.086 4.086 4 H 0.070 0.930 5 C 0.000 4.000 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.784 3.216 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.188 1.188 14 C -0.007 4.007 15 H 0.028 0.972 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.145 4.145 19 C -0.079 4.079 20 N -0.249 5.249 21 C -0.130 4.130 22 H 0.119 0.881 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.053 0.947 27 H -0.005 1.005 28 H 0.013 0.987 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -13.917 1.148 7.885 16.037 hybrid contribution 1.490 0.708 -1.078 1.970 sum -12.427 1.856 6.807 14.291 Atomic orbital electron populations 1.22110 0.94212 1.00002 1.04193 1.21352 0.96835 0.95300 1.00104 1.21173 0.95710 0.96679 0.95050 0.92957 1.18988 0.91791 0.93894 0.95303 1.21632 0.92082 1.41945 1.00946 0.92410 1.25932 0.96608 0.95963 1.01358 1.70106 1.00026 1.49645 1.37749 0.85536 0.77648 0.78703 0.79724 1.19943 1.20802 1.18816 1.21506 0.87414 0.96131 0.95667 0.97228 1.21665 0.99436 0.99719 0.94076 1.21601 0.97239 1.00198 0.96671 1.21551 0.94666 1.00949 0.97383 1.22244 1.01167 0.94863 0.89594 1.62145 1.10650 1.49334 1.02770 1.22557 1.00527 0.95767 0.94198 0.88051 0.94276 0.93945 0.93073 0.94712 1.00517 0.98655 0.92983 0.90585 0.93942 0.93269 0.90794 0.89694 0.90859 0.96069 0.88872 0.91283 0.89343 0.96939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 8.44 71.98 0.61 -3.98 16 2 C -0.10 -3.84 4.98 30.59 0.15 -3.68 16 3 C -0.07 -2.84 1.56 -10.79 -0.02 -2.86 16 4 H 0.05 2.26 5.94 -2.39 -0.01 2.24 16 5 C 0.04 2.04 4.10 29.85 0.12 2.16 16 6 C -0.53 -30.57 8.31 25.60 0.21 -30.36 16 7 H 0.06 3.24 7.16 -2.91 -0.02 3.22 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 10 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 14 C 0.10 3.62 1.57 44.94 0.07 3.69 16 15 H 0.01 0.39 8.12 -2.39 -0.02 0.37 16 16 C -0.11 -3.72 4.63 30.65 0.14 -3.58 16 17 C -0.12 -3.09 6.00 30.67 0.18 -2.91 16 18 C -0.11 -2.26 6.09 30.65 0.19 -2.07 16 19 C 0.05 1.12 5.46 86.33 0.47 1.59 16 20 N -0.52 -14.82 1.91 -897.18 -1.72 -16.54 16 21 C 0.02 0.46 8.29 127.69 1.06 1.52 16 22 H 0.10 2.96 5.55 -2.38 -0.01 2.95 16 23 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.04 1.28 6.52 -2.39 -0.02 1.27 16 25 H 0.05 1.98 5.87 -2.39 -0.01 1.97 16 26 H 0.03 1.51 6.84 -2.39 -0.02 1.50 16 27 H -0.02 -1.41 8.13 -2.39 -0.02 -1.43 16 28 H 0.00 -0.28 6.95 -2.39 -0.02 -0.30 16 29 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.08 2.49 6.12 -2.39 -0.01 2.48 16 31 H 0.04 1.66 6.83 -2.39 -0.02 1.64 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.09 1.71 8.05 -2.39 -0.02 1.69 16 38 H 0.07 2.03 4.27 -2.39 -0.01 2.02 16 39 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 40 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 Total: -1.00 -64.04 290.66 5.23 -58.80 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.99 Total: 8.27 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 3.65 Total: -40.12 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.43 Total: -74.31 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -64.04 5.23 -58.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.746 kcal (2) G-P(sol) polarization free energy of solvation -64.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds