Wall clock time and date at job start Mon Mar 30 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 C 1.53003 * 109.46808 * 119.99291 * 2 1 3 5 5 H 1.09003 * 109.47363 * 181.85644 * 4 2 1 6 6 C 1.52998 * 109.47404 * 301.86211 * 4 2 1 7 7 C 1.50707 * 109.46773 * 291.74129 * 6 4 2 8 8 H 1.07995 * 119.99880 * 354.50950 * 7 6 4 9 9 C 1.37878 * 119.99689 * 174.50919 * 7 6 4 10 10 N 1.31516 * 119.99990 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99807 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46854 * 89.99744 * 11 9 7 13 13 H 1.48497 * 109.46948 * 209.99630 * 11 9 7 14 14 H 1.48502 * 109.47154 * 330.00101 * 11 9 7 15 15 C 1.53009 * 109.46963 * 61.86090 * 4 2 1 16 16 H 1.09006 * 110.35247 * 298.89257 * 15 4 2 17 17 C 1.54597 * 110.30676 * 61.03272 * 15 4 2 18 18 C 1.54936 * 102.91642 * 140.87664 * 17 15 4 19 19 N 1.48806 * 103.35210 * 322.68656 * 18 17 15 20 20 C 1.46897 * 111.18798 * 159.50599 * 19 18 17 21 21 C 1.47911 * 105.67686 * 38.97941 * 19 18 17 22 22 H 1.09004 * 109.47442 * 299.06756 * 1 2 3 23 23 H 1.09008 * 109.47141 * 59.06299 * 1 2 3 24 24 H 1.09001 * 109.47594 * 179.05798 * 1 2 3 25 25 H 1.09000 * 109.47151 * 239.99578 * 2 1 3 26 26 H 1.08998 * 109.46606 * 170.69944 * 3 2 1 27 27 H 1.09005 * 109.46800 * 290.69516 * 3 2 1 28 28 H 1.08995 * 109.47311 * 50.69417 * 3 2 1 29 29 H 1.08997 * 109.46933 * 51.74173 * 6 4 2 30 30 H 1.09002 * 109.46804 * 171.74311 * 6 4 2 31 31 H 0.97001 * 119.99865 * 180.02562 * 10 9 7 32 32 H 1.09003 * 110.72354 * 259.22785 * 17 15 4 33 33 H 1.08993 * 110.72659 * 22.51806 * 17 15 4 34 34 H 1.09004 * 110.67203 * 81.02230 * 18 17 15 35 35 H 1.09003 * 110.66805 * 203.98107 * 18 17 15 36 36 H 1.09002 * 109.47479 * 302.66554 * 20 19 18 37 37 H 1.08998 * 109.47082 * 62.66375 * 20 19 18 38 38 H 1.08999 * 109.47320 * 182.66760 * 20 19 18 39 39 H 1.08991 * 109.91706 * 215.45223 * 21 19 18 40 40 H 1.08997 * 109.91336 * 94.35775 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 3.1294 -0.6924 1.2663 6 6 1.4920 -0.0273 2.4981 7 6 2.1163 1.3381 2.6288 8 1 2.8964 1.6427 1.9469 9 6 1.6915 2.1984 3.6190 10 7 0.7411 1.8276 4.4491 11 14 2.4648 3.8911 3.7805 12 1 1.7048 4.8634 2.9543 13 1 2.4308 4.3171 5.2027 14 1 3.8732 3.8386 3.3129 15 6 1.5684 -2.1766 1.2263 16 1 0.4793 -2.2224 1.2290 17 6 2.1330 -2.9038 -0.0156 18 6 2.4854 -4.3082 0.5358 19 7 2.9986 -4.0217 1.9029 20 6 2.9325 -5.2158 2.7558 21 6 2.1385 -2.9422 2.4346 22 1 -0.3634 0.4993 0.8982 23 1 -0.3634 0.5284 -0.8815 24 1 -0.3634 -1.0275 -0.0169 25 1 1.8933 -0.5139 -0.8899 26 1 3.1172 1.4469 0.1661 27 1 1.8187 1.9061 -0.9614 28 1 1.5474 2.0021 0.7951 29 1 0.4102 0.0744 2.4120 30 1 1.7320 -0.6225 3.3792 31 1 0.4420 2.4330 5.1454 32 1 1.3770 -2.9751 -0.7977 33 1 3.0257 -2.3994 -0.3854 34 1 1.5960 -4.9364 0.5854 35 1 3.2543 -4.7799 -0.0761 36 1 1.9046 -5.5763 2.7973 37 1 3.5740 -5.9939 2.3421 38 1 3.2697 -4.9634 3.7612 39 1 2.7290 -2.2690 3.0559 40 1 1.3251 -3.3703 3.0205 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260322546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:55 Heat of formation + Delta-G solvation = -12.965114 kcal Electronic energy + Delta-G solvation = -16732.236874 eV Core-core repulsion = 14353.250031 eV Total energy + Delta-G solvation = -2378.986843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15623 -36.46393 -32.55291 -31.65322 -29.69875 -27.73630 -26.51823 -25.67758 -24.11638 -21.85850 -20.61494 -19.97597 -17.86090 -16.32618 -15.76893 -15.20575 -14.53954 -14.27897 -13.89826 -13.30687 -13.11646 -12.69831 -12.52791 -12.02886 -11.78914 -11.55289 -11.31401 -11.24819 -11.08630 -10.97020 -10.87788 -10.60586 -10.45583 -10.32924 -10.25763 -10.09220 -9.49626 -9.33412 -8.84766 -8.56408 -8.22588 -8.16001 -5.93168 -3.88155 3.34599 3.41937 3.44951 4.31125 4.51017 5.04968 5.05634 5.28630 5.41519 5.54513 5.56470 5.57878 5.77972 5.83501 5.87620 5.95250 6.01194 6.06066 6.17374 6.24291 6.33905 6.48078 6.52165 6.56291 6.65084 6.82064 6.93987 6.95015 6.99345 7.09854 7.25125 7.29206 7.31739 7.62517 7.82322 7.95074 8.10465 8.53120 9.13533 9.69082 11.18216 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030081 B = 0.008092 C = 0.007025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.594485 B = 3459.295091 C = 3985.034648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.151 4.151 4 C -0.068 4.068 5 H 0.059 0.941 6 C 0.023 3.977 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.053 3.947 10 N -0.897 5.897 11 Si 0.881 3.119 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.274 1.274 15 C -0.091 4.091 16 H 0.069 0.931 17 C -0.117 4.117 18 C 0.033 3.967 19 N -0.524 5.524 20 C 0.018 3.982 21 C 0.040 3.960 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.018 0.982 28 H 0.102 0.898 29 H 0.026 0.974 30 H 0.011 0.989 31 H 0.258 0.742 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -9.582 -7.211 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 C -0.207 4.207 4 C -0.086 4.086 5 H 0.077 0.923 6 C -0.014 4.014 7 C -0.548 4.548 8 H 0.086 0.914 9 C -0.147 4.147 10 N -0.537 5.537 11 Si 0.710 3.290 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.110 4.110 16 H 0.088 0.912 17 C -0.155 4.155 18 C -0.095 4.095 19 N -0.248 5.248 20 C -0.131 4.131 21 C -0.087 4.087 22 H 0.090 0.910 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.120 0.880 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.600 -9.371 -7.052 11.837 hybrid contribution -0.509 0.601 0.300 0.843 sum 1.091 -8.771 -6.752 11.122 Atomic orbital electron populations 1.21932 0.96488 1.00217 1.01692 1.20879 0.95066 0.96560 0.96673 1.22392 1.00873 0.96856 1.00627 1.21310 0.99338 0.90743 0.97237 0.92296 1.19284 0.96838 0.94505 0.90781 1.21579 1.19810 0.99648 1.13722 0.91374 1.24988 0.95423 0.98249 0.96010 1.69966 1.29160 1.36113 1.18484 0.86754 0.79875 0.85239 0.77159 1.20789 1.21459 1.19914 1.22113 0.99487 0.96643 0.92786 0.91233 1.22565 1.00909 0.94423 0.97643 1.23282 0.97825 0.97468 0.90945 1.64819 1.50579 1.07215 1.02188 1.22476 0.99434 0.93008 0.98212 1.23041 0.94996 0.93161 0.97505 0.90968 0.94492 0.94034 0.93859 0.93701 0.96265 0.87976 0.95598 0.97032 0.93275 0.91772 0.90764 0.94444 0.90800 0.95860 0.91873 0.91427 0.89102 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.50 37.16 0.32 -2.29 16 2 C -0.07 -1.35 2.55 -90.62 -0.23 -1.59 16 3 C -0.15 -2.98 7.50 37.16 0.28 -2.70 16 4 C -0.07 -1.34 1.09 -90.61 -0.10 -1.44 16 5 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 6 C 0.02 0.55 4.12 -27.88 -0.11 0.44 16 7 C -0.51 -13.51 6.22 -34.44 -0.21 -13.73 16 8 H 0.07 1.76 5.12 -52.49 -0.27 1.49 16 9 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 10 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 11 Si 0.88 21.37 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C -0.09 -1.57 2.20 -89.26 -0.20 -1.76 16 16 H 0.07 1.21 6.61 -51.93 -0.34 0.87 16 17 C -0.12 -1.71 5.53 -24.87 -0.14 -1.85 16 18 C 0.03 0.44 6.58 -1.74 -0.01 0.43 16 19 N -0.52 -8.12 5.56 -238.47 -1.33 -9.44 16 20 C 0.02 0.23 9.41 60.06 0.57 0.79 16 21 C 0.04 0.70 5.76 -2.75 -0.02 0.68 16 22 H 0.07 1.48 6.17 -51.93 -0.32 1.16 16 23 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.04 0.67 6.56 -51.93 -0.34 0.33 16 25 H 0.04 0.73 7.08 -51.93 -0.37 0.36 16 26 H 0.04 0.89 7.15 -51.93 -0.37 0.52 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 2.32 5.42 -51.93 -0.28 2.04 16 29 H 0.03 0.67 5.95 -51.93 -0.31 0.36 16 30 H 0.01 0.30 6.48 -51.93 -0.34 -0.04 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.12 7.64 -51.93 -0.40 0.73 16 34 H 0.04 0.48 7.97 -51.93 -0.41 0.07 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.02 0.28 8.01 -51.93 -0.42 -0.13 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.79 6.55 -51.93 -0.34 1.45 16 40 H 0.04 0.62 7.73 -51.93 -0.40 0.22 16 LS Contribution 294.32 15.07 4.44 4.44 Total: -1.00 -28.02 294.32 -8.13 -36.15 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.00 Total: -0.26 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 0.04 Total: -21.63 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.59 Total: -35.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.02 -8.13 -36.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.187 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds