Wall clock time and date at job start Mon Mar 30 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 C 1.53003 * 109.46808 * 119.99291 * 2 1 3 5 5 H 1.09003 * 109.47363 * 181.85644 * 4 2 1 6 6 C 1.52998 * 109.47404 * 301.86211 * 4 2 1 7 7 C 1.50707 * 109.46773 * 291.74129 * 6 4 2 8 8 H 1.07995 * 119.99880 * 354.50950 * 7 6 4 9 9 C 1.37878 * 119.99689 * 174.50919 * 7 6 4 10 10 N 1.31516 * 119.99990 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99807 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46854 * 89.99744 * 11 9 7 13 13 H 1.48497 * 109.46948 * 209.99630 * 11 9 7 14 14 H 1.48502 * 109.47154 * 330.00101 * 11 9 7 15 15 C 1.53009 * 109.46963 * 61.86090 * 4 2 1 16 16 H 1.09006 * 110.35247 * 298.89257 * 15 4 2 17 17 C 1.54597 * 110.30676 * 61.03272 * 15 4 2 18 18 C 1.54936 * 102.91642 * 140.87664 * 17 15 4 19 19 N 1.48806 * 103.35210 * 322.68656 * 18 17 15 20 20 C 1.46897 * 111.18798 * 159.50599 * 19 18 17 21 21 C 1.47911 * 105.67686 * 38.97941 * 19 18 17 22 22 H 1.09004 * 109.47442 * 299.06756 * 1 2 3 23 23 H 1.09008 * 109.47141 * 59.06299 * 1 2 3 24 24 H 1.09001 * 109.47594 * 179.05798 * 1 2 3 25 25 H 1.09000 * 109.47151 * 239.99578 * 2 1 3 26 26 H 1.08998 * 109.46606 * 170.69944 * 3 2 1 27 27 H 1.09005 * 109.46800 * 290.69516 * 3 2 1 28 28 H 1.08995 * 109.47311 * 50.69417 * 3 2 1 29 29 H 1.08997 * 109.46933 * 51.74173 * 6 4 2 30 30 H 1.09002 * 109.46804 * 171.74311 * 6 4 2 31 31 H 0.97001 * 119.99865 * 180.02562 * 10 9 7 32 32 H 1.09003 * 110.72354 * 259.22785 * 17 15 4 33 33 H 1.08993 * 110.72659 * 22.51806 * 17 15 4 34 34 H 1.09004 * 110.67203 * 81.02230 * 18 17 15 35 35 H 1.09003 * 110.66805 * 203.98107 * 18 17 15 36 36 H 1.09002 * 109.47479 * 302.66554 * 20 19 18 37 37 H 1.08998 * 109.47082 * 62.66375 * 20 19 18 38 38 H 1.08999 * 109.47320 * 182.66760 * 20 19 18 39 39 H 1.08991 * 109.91706 * 215.45223 * 21 19 18 40 40 H 1.08997 * 109.91336 * 94.35775 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 3.1294 -0.6924 1.2663 6 6 1.4920 -0.0273 2.4981 7 6 2.1163 1.3381 2.6288 8 1 2.8964 1.6427 1.9469 9 6 1.6915 2.1984 3.6190 10 7 0.7411 1.8276 4.4491 11 14 2.4648 3.8911 3.7805 12 1 1.7048 4.8634 2.9543 13 1 2.4308 4.3171 5.2027 14 1 3.8732 3.8386 3.3129 15 6 1.5684 -2.1766 1.2263 16 1 0.4793 -2.2224 1.2290 17 6 2.1330 -2.9038 -0.0156 18 6 2.4854 -4.3082 0.5358 19 7 2.9986 -4.0217 1.9029 20 6 2.9325 -5.2158 2.7558 21 6 2.1385 -2.9422 2.4346 22 1 -0.3634 0.4993 0.8982 23 1 -0.3634 0.5284 -0.8815 24 1 -0.3634 -1.0275 -0.0169 25 1 1.8933 -0.5139 -0.8899 26 1 3.1172 1.4469 0.1661 27 1 1.8187 1.9061 -0.9614 28 1 1.5474 2.0021 0.7951 29 1 0.4102 0.0744 2.4120 30 1 1.7320 -0.6225 3.3792 31 1 0.4420 2.4330 5.1454 32 1 1.3770 -2.9751 -0.7977 33 1 3.0257 -2.3994 -0.3854 34 1 1.5960 -4.9364 0.5854 35 1 3.2543 -4.7799 -0.0761 36 1 1.9046 -5.5763 2.7973 37 1 3.5740 -5.9939 2.3421 38 1 3.2697 -4.9634 3.7612 39 1 2.7290 -2.2690 3.0559 40 1 1.3251 -3.3703 3.0205 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260322546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:55 Heat of formation + Delta-G solvation = -29.669399 kcal Electronic energy + Delta-G solvation = -16732.961226 eV Core-core repulsion = 14353.250031 eV Total energy + Delta-G solvation = -2379.711195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52558 -37.93927 -34.57765 -32.96997 -31.21299 -29.40293 -27.99808 -27.12234 -25.65527 -23.57021 -21.89042 -21.35942 -19.44850 -18.35346 -17.12027 -16.53953 -16.36761 -15.84199 -15.10450 -14.71266 -14.59407 -14.26173 -13.90574 -13.78533 -13.19176 -13.07051 -12.95752 -12.72730 -12.62761 -12.51580 -12.26832 -12.17919 -12.03906 -12.00749 -11.81261 -11.62013 -11.08974 -11.00097 -10.63574 -10.46530 -10.27379 -9.34832 -8.07775 -6.07262 1.40689 1.41833 1.51279 2.46878 3.16282 3.25944 3.78124 3.85599 3.96613 4.31177 4.34812 4.41205 4.45376 4.50053 4.62564 4.71189 4.76843 4.80057 4.96470 4.98046 5.02097 5.05049 5.08180 5.14376 5.20006 5.32552 5.38111 5.40217 5.44681 5.49077 5.62594 5.77034 5.88735 5.97975 6.05816 6.08087 6.16654 6.44241 7.02942 7.52902 9.04262 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030081 B = 0.008092 C = 0.007025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.594485 B = 3459.295091 C = 3985.034648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.148 4.148 4 C -0.057 4.057 5 H 0.043 0.957 6 C 0.031 3.969 7 C -0.509 4.509 8 H 0.074 0.926 9 C -0.003 4.003 10 N -0.937 5.937 11 Si 0.943 3.057 12 H -0.274 1.274 13 H -0.290 1.290 14 H -0.266 1.266 15 C -0.089 4.089 16 H 0.067 0.933 17 C -0.110 4.110 18 C 0.036 3.964 19 N -0.540 5.540 20 C 0.017 3.983 21 C 0.044 3.956 22 H 0.034 0.966 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.004 0.996 30 H -0.018 1.018 31 H 0.256 0.744 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -10.490 -9.490 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.205 4.205 4 C -0.075 4.075 5 H 0.062 0.938 6 C -0.006 4.006 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.199 4.199 10 N -0.579 5.579 11 Si 0.769 3.231 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.190 1.190 15 C -0.108 4.108 16 H 0.086 0.914 17 C -0.148 4.148 18 C -0.092 4.092 19 N -0.264 5.264 20 C -0.132 4.132 21 C -0.084 4.084 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.000 1.000 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.185 -10.285 -9.347 14.068 hybrid contribution -0.675 0.845 1.008 1.479 sum 1.510 -9.440 -8.338 12.685 Atomic orbital electron populations 1.21844 0.95901 1.01159 1.00791 1.20899 0.95501 0.95794 0.96785 1.22259 1.00076 0.97487 1.00687 1.21106 0.98082 0.92523 0.95811 0.93805 1.19146 0.95503 0.93864 0.92074 1.21967 1.19279 1.00397 1.13066 0.90830 1.25771 0.96089 1.02021 0.96034 1.70103 1.30953 1.37449 1.19430 0.85772 0.79374 0.81017 0.76927 1.20023 1.21633 1.18998 1.22025 0.99352 0.94947 0.94503 0.91426 1.22542 1.01212 0.94460 0.96608 1.23350 0.98998 0.97083 0.89730 1.64779 1.50304 1.07784 1.03540 1.22534 1.00355 0.92486 0.97792 1.22844 0.94584 0.93602 0.97328 0.94647 0.92411 0.92326 0.90796 0.94248 0.93693 0.91491 0.97740 0.99988 0.93495 0.89466 0.91048 0.93192 0.88773 0.95193 0.89679 0.91986 0.92586 0.94847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 8.50 71.98 0.61 -4.17 16 2 C -0.07 -2.52 2.55 -10.79 -0.03 -2.55 16 3 C -0.15 -5.67 7.50 71.98 0.54 -5.13 16 4 C -0.06 -2.25 1.09 -10.79 -0.01 -2.26 16 5 H 0.04 1.86 8.12 -2.39 -0.02 1.84 16 6 C 0.03 1.57 4.12 29.85 0.12 1.69 16 7 C -0.51 -27.75 6.22 25.60 0.16 -27.59 16 8 H 0.07 3.86 5.12 -2.91 -0.01 3.84 16 9 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 10 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 11 Si 0.94 44.62 29.54 68.60 2.03 46.65 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 C -0.09 -2.99 2.20 -9.91 -0.02 -3.01 16 16 H 0.07 2.29 6.61 -2.38 -0.02 2.27 16 17 C -0.11 -2.87 5.53 31.80 0.18 -2.70 16 18 C 0.04 0.85 6.58 86.60 0.57 1.42 16 19 N -0.54 -15.91 5.56 -908.40 -5.05 -20.96 16 20 C 0.02 0.40 9.41 127.69 1.20 1.60 16 21 C 0.04 1.55 5.76 86.44 0.50 2.05 16 22 H 0.03 1.46 6.17 -2.39 -0.01 1.45 16 23 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.06 1.78 6.56 -2.39 -0.02 1.76 16 25 H 0.07 2.22 7.08 -2.39 -0.02 2.20 16 26 H 0.04 1.51 7.15 -2.39 -0.02 1.50 16 27 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.07 3.05 5.42 -2.39 -0.01 3.04 16 29 H 0.00 0.24 5.95 -2.39 -0.01 0.22 16 30 H -0.02 -1.02 6.48 -2.39 -0.02 -1.03 16 31 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.92 7.64 -2.39 -0.02 1.91 16 34 H 0.05 1.09 7.97 -2.38 -0.02 1.07 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.03 0.67 8.01 -2.39 -0.02 0.66 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 2.33 6.55 -2.39 -0.02 2.31 16 40 H 0.03 1.16 7.73 -2.39 -0.02 1.14 16 Total: -1.00 -61.83 294.32 2.53 -59.31 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.99 Total: 12.11 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.28 Total: -40.35 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -4.77 Total: -77.72 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.83 2.53 -59.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.640 kcal (2) G-P(sol) polarization free energy of solvation -61.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds