Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47167 * 2 1 4 4 C 1.53005 * 109.47002 * 119.99712 * 2 1 3 5 5 H 1.08995 * 109.46763 * 186.75622 * 4 2 1 6 6 C 1.53001 * 109.46811 * 66.76031 * 4 2 1 7 7 C 1.50695 * 109.47038 * 63.10278 * 6 4 2 8 8 H 1.08001 * 120.00815 * 3.41638 * 7 6 4 9 9 C 1.37879 * 120.00010 * 183.42249 * 7 6 4 10 10 N 1.31517 * 120.00167 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99865 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47422 * 90.00089 * 11 9 7 13 13 H 1.48504 * 109.47504 * 210.00201 * 11 9 7 14 14 H 1.48499 * 109.47279 * 330.00294 * 11 9 7 15 15 C 1.52995 * 109.47144 * 306.76196 * 4 2 1 16 16 H 1.08991 * 110.63444 * 56.94052 * 15 4 2 17 17 C 1.55146 * 110.70317 * 180.23964 * 15 4 2 18 18 C 1.54910 * 101.65327 * 154.03087 * 17 15 4 19 19 N 1.47841 * 104.79785 * 322.93166 * 18 17 15 20 20 C 1.46901 * 111.00440 * 146.36275 * 19 18 17 21 21 C 1.47448 * 108.56916 * 24.09268 * 19 18 17 22 22 H 1.08998 * 109.47108 * 66.23253 * 1 2 3 23 23 H 1.09000 * 109.47312 * 186.23427 * 1 2 3 24 24 H 1.09007 * 109.47108 * 306.23380 * 1 2 3 25 25 H 1.08996 * 109.47162 * 240.00121 * 2 1 3 26 26 H 1.08998 * 109.46664 * 45.24393 * 3 2 1 27 27 H 1.08992 * 109.47255 * 165.24983 * 3 2 1 28 28 H 1.09003 * 109.46750 * 285.25104 * 3 2 1 29 29 H 1.08994 * 109.46680 * 183.09792 * 6 4 2 30 30 H 1.08996 * 109.47084 * 303.09818 * 6 4 2 31 31 H 0.96997 * 119.99918 * 179.97438 * 10 9 7 32 32 H 1.08993 * 110.98908 * 272.12144 * 17 15 4 33 33 H 1.08997 * 110.99050 * 35.94344 * 17 15 4 34 34 H 1.08996 * 110.37392 * 204.09659 * 18 17 15 35 35 H 1.09007 * 110.37231 * 81.75694 * 18 17 15 36 36 H 1.09011 * 109.46766 * 299.15444 * 20 19 18 37 37 H 1.09000 * 109.46963 * 59.15125 * 20 19 18 38 38 H 1.08995 * 109.47360 * 179.15598 * 20 19 18 39 39 H 1.08996 * 109.88980 * 239.60734 * 21 19 18 40 40 H 1.08999 * 110.02495 * 118.49451 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1232 -0.6177 1.3118 6 6 1.6733 -2.2044 1.1673 7 6 2.3690 -2.8292 -0.0145 8 1 3.0516 -2.2427 -0.6115 9 6 2.1339 -4.1497 -0.3338 10 7 2.7406 -4.6949 -1.3655 11 14 0.9537 -5.1645 0.6990 12 1 -0.4185 -5.0445 0.1442 13 1 1.3742 -6.5885 0.6758 14 1 0.9670 -4.6672 2.0982 15 6 1.3961 -0.1047 2.4927 16 1 0.3092 -0.1496 2.4247 17 6 1.8988 -0.8120 3.7787 18 6 1.7198 0.3028 4.8393 19 7 2.0711 1.5542 4.1348 20 6 1.2632 2.6789 4.6250 21 6 1.8708 1.3507 2.6882 22 1 -0.3633 0.4142 -0.9405 23 1 -0.3634 -1.0216 0.1116 24 1 -0.3634 0.6075 0.8290 25 1 1.8933 -0.5138 -0.8900 26 1 1.4789 2.0262 0.7298 27 1 3.0980 1.4539 0.2616 28 1 1.9063 1.8752 -0.9915 29 1 1.9879 -2.7074 2.0816 30 1 0.5945 -2.3059 1.0494 31 1 2.5755 -5.6240 -1.5898 32 1 1.2809 -1.6783 4.0148 33 1 2.9469 -1.0960 3.6839 34 1 2.3939 0.1385 5.6800 35 1 0.6857 0.3378 5.1823 36 1 0.2079 2.4746 4.4436 37 1 1.4299 2.8070 5.6946 38 1 1.5523 3.5897 4.1006 39 1 2.8098 1.5088 2.1580 40 1 1.1139 2.0408 2.3155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260322551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = -31.264200 kcal Electronic energy + Delta-G solvation = -16776.694204 eV Core-core repulsion = 14396.913853 eV Total energy + Delta-G solvation = -2379.780351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75277 -37.70867 -34.78662 -33.12896 -31.45845 -29.85369 -28.00062 -27.17388 -25.55602 -23.25933 -21.99525 -21.43988 -19.69091 -18.81094 -17.11201 -16.40939 -16.20921 -15.59867 -15.27688 -14.95130 -14.84880 -14.34502 -14.18797 -14.00477 -13.53675 -13.18608 -13.06370 -12.97256 -12.55618 -12.33660 -12.24252 -12.17607 -12.08150 -11.92502 -11.66833 -11.49546 -11.37353 -11.12612 -10.85432 -10.72284 -10.59979 -9.18486 -8.24628 -6.25150 1.33654 1.35776 1.47283 2.37478 3.11121 3.17574 3.73879 3.78314 3.96415 4.17455 4.31762 4.33860 4.47618 4.55006 4.57201 4.64429 4.70230 4.77122 4.89065 4.89516 4.96516 4.98216 5.01145 5.03939 5.11173 5.19466 5.21603 5.26239 5.29996 5.40067 5.54621 5.62618 5.68456 5.79686 5.84012 6.06747 6.22892 6.37405 6.82121 7.37583 8.92395 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031101 B = 0.008385 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.063047 B = 3338.647106 C = 3852.695341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.049 4.049 5 H 0.043 0.957 6 C -0.003 4.003 7 C -0.511 4.511 8 H 0.032 0.968 9 C 0.002 3.998 10 N -0.955 5.955 11 Si 0.942 3.058 12 H -0.269 1.269 13 H -0.288 1.288 14 H -0.247 1.247 15 C -0.099 4.099 16 H 0.078 0.922 17 C -0.128 4.128 18 C 0.047 3.953 19 N -0.553 5.553 20 C 0.020 3.980 21 C 0.050 3.950 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.014 0.986 30 H 0.018 0.982 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 13.502 11.601 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.068 4.068 5 H 0.062 0.938 6 C -0.041 4.041 7 C -0.549 4.549 8 H 0.050 0.950 9 C -0.194 4.194 10 N -0.597 5.597 11 Si 0.766 3.234 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.171 1.171 15 C -0.118 4.118 16 H 0.097 0.903 17 C -0.166 4.166 18 C -0.080 4.080 19 N -0.278 5.278 20 C -0.128 4.128 21 C -0.077 4.077 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.751 13.505 11.623 18.723 hybrid contribution -0.869 -1.307 -0.459 1.635 sum -6.620 12.198 11.164 17.811 Atomic orbital electron populations 1.21826 0.95066 1.01052 1.01505 1.20998 0.96216 0.95888 0.97564 1.22221 1.00792 0.95478 1.01964 1.20906 0.97938 0.94404 0.93519 0.93839 1.19588 0.95762 0.93889 0.94829 1.21463 1.25180 0.95949 1.12346 0.94957 1.25948 0.97908 0.99323 0.96213 1.70076 1.45837 1.14018 1.29741 0.85772 0.79308 0.77539 0.80751 1.19413 1.21366 1.17052 1.22424 1.00040 0.95056 0.94290 0.90346 1.22751 1.01350 0.97818 0.94657 1.23030 0.99783 0.88395 0.96834 1.63640 1.54810 1.05236 1.04093 1.22578 0.94813 0.93925 1.01506 1.23284 1.00858 0.95341 0.88245 0.92796 0.94170 0.91351 0.94024 0.90203 0.93282 0.93041 0.96810 0.96382 0.92842 0.91165 0.92080 0.89898 0.92757 0.95251 0.90659 0.90802 0.90702 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.34 71.98 0.60 -3.77 16 2 C -0.09 -3.17 2.57 -10.79 -0.03 -3.20 16 3 C -0.15 -4.19 7.69 71.98 0.55 -3.63 16 4 C -0.05 -1.86 1.22 -10.79 -0.01 -1.87 16 5 H 0.04 1.81 7.96 -2.39 -0.02 1.79 16 6 C 0.00 -0.16 3.23 29.85 0.10 -0.06 16 7 C -0.51 -29.44 8.78 25.60 0.22 -29.21 16 8 H 0.03 2.06 7.34 -2.91 -0.02 2.04 16 9 C 0.00 0.11 5.47 84.65 0.46 0.57 16 10 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 11 Si 0.94 45.00 27.40 68.60 1.88 46.88 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.25 -10.93 6.64 99.48 0.66 -10.27 16 15 C -0.10 -2.98 2.01 -9.61 -0.02 -3.00 16 16 H 0.08 2.28 6.37 -2.39 -0.02 2.27 16 17 C -0.13 -3.74 5.36 31.98 0.17 -3.57 16 18 C 0.05 1.12 6.73 86.77 0.58 1.70 16 19 N -0.55 -13.51 5.44 -911.67 -4.96 -18.47 16 20 C 0.02 0.37 9.12 127.69 1.16 1.53 16 21 C 0.05 1.28 4.54 86.65 0.39 1.68 16 22 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.04 1.44 6.31 -2.39 -0.02 1.42 16 24 H 0.07 1.80 6.56 -2.38 -0.02 1.78 16 25 H 0.04 1.85 6.72 -2.39 -0.02 1.83 16 26 H 0.08 1.90 4.76 -2.39 -0.01 1.88 16 27 H 0.05 1.42 7.10 -2.39 -0.02 1.40 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.01 0.64 6.40 -2.39 -0.02 0.62 16 30 H 0.02 0.82 5.62 -2.39 -0.01 0.81 16 31 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 33 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.15 7.78 -2.38 -0.02 1.13 16 36 H 0.03 0.51 8.10 -2.38 -0.02 0.49 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 2.11 5.85 -2.39 -0.01 2.09 16 40 H 0.07 1.57 6.01 -2.39 -0.01 1.55 16 Total: -1.00 -64.98 290.67 2.35 -62.63 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.94 Total: 12.34 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 4.19 Total: -42.82 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -4.66 Total: -79.04 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -64.98 2.35 -62.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.369 kcal (2) G-P(sol) polarization free energy of solvation -64.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds