Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46970 * 2 1 4 4 C 1.53000 * 109.47344 * 120.00156 * 2 1 3 5 5 H 1.08998 * 109.46846 * 311.37850 * 4 2 1 6 6 C 1.53001 * 109.47100 * 191.38318 * 4 2 1 7 7 C 1.50698 * 109.46955 * 319.88328 * 6 4 2 8 8 H 1.08004 * 120.00415 * 354.93692 * 7 6 4 9 9 C 1.37876 * 120.00091 * 174.94027 * 7 6 4 10 10 N 1.31516 * 120.00063 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00307 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46846 * 269.99647 * 11 9 7 13 13 H 1.48500 * 109.46613 * 29.99466 * 11 9 7 14 14 H 1.48493 * 109.47200 * 149.99839 * 11 9 7 15 15 C 1.52991 * 109.47347 * 71.38183 * 4 2 1 16 16 H 1.08999 * 109.88382 * 64.92493 * 15 4 2 17 17 C 1.54322 * 109.88594 * 303.89541 * 15 4 2 18 18 C 1.55400 * 102.90121 * 218.40814 * 17 15 4 19 19 C 1.54903 * 101.74077 * 35.48041 * 18 17 15 20 20 N 1.47446 * 109.89093 * 185.96320 * 15 4 2 21 21 C 1.46894 * 110.99862 * 356.14261 * 20 15 4 22 22 H 1.09005 * 109.46940 * 147.18265 * 1 2 3 23 23 H 1.09000 * 109.46839 * 267.18176 * 1 2 3 24 24 H 1.08999 * 109.47442 * 27.18246 * 1 2 3 25 25 H 1.09002 * 109.47360 * 240.00444 * 2 1 3 26 26 H 1.09000 * 109.47055 * 186.46440 * 3 2 1 27 27 H 1.08994 * 109.46961 * 306.46542 * 3 2 1 28 28 H 1.08997 * 109.46874 * 66.46751 * 3 2 1 29 29 H 1.09003 * 109.46682 * 199.88844 * 6 4 2 30 30 H 1.08992 * 109.47737 * 79.88658 * 6 4 2 31 31 H 0.97003 * 120.00110 * 180.02562 * 10 9 7 32 32 H 1.08998 * 110.70607 * 336.69660 * 17 15 4 33 33 H 1.09004 * 110.70623 * 99.93117 * 17 15 4 34 34 H 1.09001 * 110.86953 * 277.39135 * 18 17 15 35 35 H 1.08995 * 111.05566 * 153.65132 * 18 17 15 36 36 H 1.09000 * 110.37572 * 204.18587 * 19 18 17 37 37 H 1.08998 * 110.46526 * 81.89638 * 19 18 17 38 38 H 1.09004 * 109.46805 * 25.06588 * 21 20 15 39 39 H 1.09000 * 109.47183 * 145.06255 * 21 20 15 40 40 H 1.08998 * 109.47821 * 265.06315 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5206 -0.3380 2.1275 6 6 3.5432 -0.4794 1.3997 7 6 4.2003 -0.5431 0.0450 8 1 3.6206 -0.8171 -0.8241 9 6 5.5416 -0.2516 -0.0850 10 7 6.2475 0.0825 0.9732 11 14 6.3561 -0.3299 -1.7643 12 1 6.8856 -1.6980 -1.9943 13 1 5.3581 -0.0023 -2.8141 14 1 7.4718 0.6484 -1.8194 15 6 1.7759 -2.2222 1.1151 16 1 2.3612 -2.6294 0.2907 17 6 0.2734 -2.4705 0.8650 18 6 -0.0093 -3.7531 1.6957 19 6 0.9169 -3.5461 2.9200 20 7 2.1323 -2.9085 2.3705 21 6 2.7165 -1.9687 3.3366 22 1 -0.3633 -0.8637 -0.5570 23 1 -0.3633 -0.0505 1.0264 24 1 -0.3634 0.9141 -0.4694 25 1 1.8933 -0.5138 -0.8900 26 1 3.1237 1.4447 -0.1157 27 1 1.5852 1.9886 -0.8264 28 1 1.7741 1.9218 0.9422 29 1 3.9712 -1.2445 2.0474 30 1 3.7110 0.5039 1.8390 31 1 7.1911 0.2880 0.8817 32 1 -0.3218 -1.6347 1.2327 33 1 0.0826 -2.6445 -0.1940 34 1 0.2732 -4.6465 1.1389 35 1 -1.0547 -3.7997 2.0005 36 1 1.1643 -4.5052 3.3752 37 1 0.4422 -2.8914 3.6507 38 1 2.3651 -0.9598 3.1200 39 1 2.4142 -2.2499 4.3454 40 1 3.8034 -1.9988 3.2614 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260497315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = 10.177838 kcal Electronic energy + Delta-G solvation = -17237.795846 eV Core-core repulsion = 14859.812557 eV Total energy + Delta-G solvation = -2377.983289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23432 -37.22549 -34.81295 -33.54743 -31.10564 -29.84255 -27.44038 -26.68547 -26.16678 -23.30363 -21.84297 -21.14183 -20.34346 -18.11867 -16.92165 -16.54389 -16.52023 -15.32768 -15.28909 -14.80449 -14.63056 -14.36438 -13.95338 -13.52211 -13.39535 -13.15969 -12.87515 -12.78893 -12.51821 -12.41791 -12.31659 -12.06307 -12.02325 -11.67856 -11.58340 -11.36037 -11.14871 -10.94250 -10.66717 -10.48865 -10.23089 -8.95557 -8.06172 -6.06983 1.39686 1.40841 1.49652 2.47112 3.26645 3.28080 3.87120 3.90160 4.01452 4.24155 4.29498 4.37017 4.54408 4.57239 4.63735 4.71182 4.76460 4.82464 4.91900 5.02075 5.04010 5.07025 5.12945 5.18581 5.22622 5.31092 5.32164 5.40543 5.49152 5.59049 5.67000 5.68618 5.87942 5.94865 6.04819 6.29225 6.37305 6.47606 7.05245 7.55002 9.05672 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027215 B = 0.009888 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.598657 B = 2831.125864 C = 3239.040652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.078 4.078 5 H 0.055 0.945 6 C 0.011 3.989 7 C -0.493 4.493 8 H 0.060 0.940 9 C -0.003 4.003 10 N -0.936 5.936 11 Si 0.941 3.059 12 H -0.281 1.281 13 H -0.264 1.264 14 H -0.290 1.290 15 C 0.087 3.913 16 H 0.052 0.948 17 C -0.143 4.143 18 C -0.125 4.125 19 C 0.038 3.962 20 N -0.547 5.547 21 C 0.008 3.992 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.027 0.973 30 H -0.017 1.017 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.304 -3.828 0.850 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.097 4.097 5 H 0.073 0.927 6 C -0.025 4.025 7 C -0.531 4.531 8 H 0.078 0.922 9 C -0.199 4.199 10 N -0.578 5.578 11 Si 0.768 3.232 12 H -0.207 1.207 13 H -0.188 1.188 14 H -0.216 1.216 15 C -0.021 4.021 16 H 0.070 0.930 17 C -0.181 4.181 18 C -0.163 4.163 19 C -0.089 4.089 20 N -0.271 5.271 21 C -0.140 4.140 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.002 0.998 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.755 -4.162 0.801 14.394 hybrid contribution 0.875 0.797 -0.487 1.280 sum -12.880 -3.365 0.314 13.316 Atomic orbital electron populations 1.22327 0.94362 1.01999 1.01560 1.20888 0.95124 0.95593 0.97535 1.21869 1.02014 0.96096 0.99764 1.21592 0.97017 0.94782 0.96339 0.92743 1.19716 0.91317 0.95282 0.96228 1.21597 0.93760 1.42710 0.95041 0.92216 1.25744 0.98589 0.96330 0.99208 1.70092 1.07706 1.49579 1.30471 0.85795 0.78376 0.77472 0.81537 1.20730 1.18825 1.21560 1.22312 0.95505 0.92288 0.92023 0.92962 1.23467 0.94975 0.98670 1.01005 1.22770 0.99833 0.97964 0.95697 1.23187 0.89373 0.99202 0.97188 1.63622 1.28000 1.30883 1.04601 1.23090 0.99649 0.96846 0.94384 0.91196 0.92211 0.92751 0.92742 0.93178 0.92973 0.94272 0.95469 0.99842 0.93597 0.88940 0.90335 0.91246 0.88717 0.90326 0.93270 0.92228 0.92279 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 7.77 71.98 0.56 -3.31 16 2 C -0.07 -2.60 1.83 -10.79 -0.02 -2.62 16 3 C -0.14 -5.38 8.21 71.98 0.59 -4.79 16 4 C -0.08 -3.07 0.95 -10.80 -0.01 -3.08 16 5 H 0.05 2.05 6.00 -2.39 -0.01 2.04 16 6 C 0.01 0.56 3.00 29.85 0.09 0.65 16 7 C -0.49 -26.89 6.18 25.60 0.16 -26.73 16 8 H 0.06 3.18 5.79 -2.91 -0.02 3.16 16 9 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 10 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 11 Si 0.94 45.19 29.54 68.60 2.03 47.22 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 14 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 15 C 0.09 3.14 2.93 45.26 0.13 3.27 16 16 H 0.05 2.24 7.87 -2.39 -0.02 2.23 16 17 C -0.14 -3.80 4.46 31.87 0.14 -3.66 16 18 C -0.12 -2.86 7.08 32.07 0.23 -2.63 16 19 C 0.04 1.02 6.54 86.77 0.57 1.59 16 20 N -0.55 -19.68 5.44 -886.57 -4.82 -24.50 16 21 C 0.01 0.29 8.15 127.69 1.04 1.33 16 22 H 0.07 1.64 6.00 -2.38 -0.01 1.63 16 23 H 0.06 1.48 6.02 -2.39 -0.01 1.47 16 24 H 0.05 1.33 7.68 -2.39 -0.02 1.31 16 25 H 0.05 2.16 6.34 -2.39 -0.02 2.15 16 26 H 0.05 2.34 5.66 -2.39 -0.01 2.33 16 27 H 0.05 1.73 7.96 -2.39 -0.02 1.71 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.03 1.49 4.13 -2.39 -0.01 1.48 16 30 H -0.02 -0.95 7.72 -2.39 -0.02 -0.97 16 31 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.09 2.25 4.74 -2.39 -0.01 2.24 16 33 H 0.08 1.95 7.20 -2.38 -0.02 1.93 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.22 7.68 -2.39 -0.02 1.20 16 38 H 0.06 2.30 3.71 -2.38 -0.01 2.30 16 39 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 40 H 0.05 2.11 6.23 -2.39 -0.01 2.09 16 Total: -1.00 -62.62 281.32 2.44 -60.18 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.01 Total: 13.79 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 3.94 Total: -39.67 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -4.53 Total: -81.52 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -62.62 2.44 -60.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260497315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.358 kcal (2) G-P(sol) polarization free energy of solvation -62.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds