Wall clock time and date at job start Mon Mar 30 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47610 * 2 1 4 4 C 1.53004 * 109.47056 * 120.00128 * 2 1 3 5 5 H 1.09004 * 109.46949 * 53.66124 * 4 2 1 6 6 C 1.52995 * 109.47100 * 293.66744 * 4 2 1 7 7 C 1.50695 * 109.47527 * 68.63027 * 6 4 2 8 8 H 1.07998 * 119.99677 * 4.94372 * 7 6 4 9 9 C 1.37874 * 120.00119 * 184.93950 * 7 6 4 10 10 N 1.31519 * 120.00297 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00057 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47492 * 90.00197 * 11 9 7 13 13 H 1.48504 * 109.47331 * 210.00233 * 11 9 7 14 14 H 1.48500 * 109.47315 * 329.99903 * 11 9 7 15 15 C 1.52995 * 109.47062 * 173.66257 * 4 2 1 16 16 H 1.09000 * 109.50695 * 65.01029 * 15 4 2 17 17 C 1.53123 * 109.50248 * 185.08711 * 15 4 2 18 18 C 1.53122 * 109.16128 * 177.59485 * 17 15 4 19 19 C 1.53036 * 109.27823 * 302.34731 * 18 17 15 20 20 N 1.46843 * 109.52572 * 59.17832 * 19 18 17 21 21 C 1.46850 * 111.19779 * 298.25961 * 20 19 18 22 22 H 1.09001 * 109.47035 * 313.32166 * 1 2 3 23 23 H 1.09001 * 109.47003 * 73.31321 * 1 2 3 24 24 H 1.08996 * 109.47323 * 193.31676 * 1 2 3 25 25 H 1.09009 * 109.47039 * 239.99979 * 2 1 3 26 26 H 1.09000 * 109.47802 * 176.41716 * 3 2 1 27 27 H 1.09007 * 109.47043 * 296.41405 * 3 2 1 28 28 H 1.08999 * 109.47226 * 56.41327 * 3 2 1 29 29 H 1.09001 * 109.47059 * 188.63591 * 6 4 2 30 30 H 1.09008 * 109.46732 * 308.63034 * 6 4 2 31 31 H 0.96999 * 120.00076 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.52114 * 57.69430 * 17 15 4 33 33 H 1.08998 * 109.57400 * 297.53030 * 17 15 4 34 34 H 1.09009 * 109.50015 * 62.28639 * 18 17 15 35 35 H 1.08992 * 109.50252 * 182.40244 * 18 17 15 36 36 H 1.08997 * 109.46012 * 179.19270 * 19 18 17 37 37 H 1.08993 * 109.46305 * 299.16003 * 19 18 17 38 38 H 1.00904 * 111.00104 * 62.35539 * 20 19 18 39 39 H 1.08999 * 109.45967 * 301.71945 * 21 20 19 40 40 H 1.09001 * 109.45929 * 181.75437 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5869 -1.7110 1.3078 6 6 1.6640 0.0859 2.4934 7 6 0.1701 0.0445 2.6867 8 1 -0.4413 -0.5671 2.0397 9 6 -0.4161 0.7873 3.6894 10 7 0.3283 1.5324 4.4770 11 14 -2.2679 0.7354 3.9295 12 1 -2.6141 -0.3556 4.8756 13 1 -2.7323 2.0340 4.4801 14 1 -2.9296 0.4865 2.6235 15 6 3.5616 -0.8607 1.1722 16 1 4.0197 0.1279 1.2034 17 6 4.0595 -1.6923 2.3576 18 6 5.5749 -1.8776 2.2403 19 6 5.9000 -2.5488 0.9040 20 7 5.4042 -1.7143 -0.1978 21 6 3.9451 -1.5614 -0.1331 22 1 -0.3633 0.7051 0.7476 23 1 -0.3633 0.2951 -0.9844 24 1 -0.3634 -1.0000 0.2367 25 1 1.8933 -0.5139 -0.8901 26 1 3.1282 1.4431 0.0642 27 1 1.7302 1.9374 -0.9204 28 1 1.6253 1.9745 0.8561 29 1 2.1555 -0.3428 3.3668 30 1 1.9855 1.1197 2.3665 31 1 -0.0842 2.0552 5.1822 32 1 3.5717 -2.6670 2.3491 33 1 3.8266 -1.1764 3.2891 34 1 6.0652 -0.9051 2.2879 35 1 5.9292 -2.5047 3.0583 36 1 6.9793 -2.6692 0.8112 37 1 5.4208 -3.5269 0.8628 38 1 5.8620 -0.8151 -0.2048 39 1 3.4750 -2.5442 -0.1695 40 1 3.6046 -0.9646 -0.9793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:51 Heat of formation + Delta-G solvation = -30.302467 kcal Electronic energy + Delta-G solvation = -16837.548812 eV Core-core repulsion = 14457.810165 eV Total energy + Delta-G solvation = -2379.738647 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.21306 -36.36199 -32.51147 -31.71927 -30.65923 -28.38454 -26.49886 -25.06700 -23.51829 -21.96159 -21.18274 -19.94572 -17.92121 -16.31037 -15.80521 -14.95547 -14.49781 -14.31435 -14.07724 -13.53443 -13.40460 -12.65488 -12.26036 -12.01876 -11.88649 -11.70810 -11.38022 -11.21803 -11.11837 -10.87357 -10.79122 -10.61319 -10.47497 -10.36784 -10.23793 -9.90364 -9.53978 -9.37336 -9.06410 -8.61180 -8.25841 -7.96956 -5.95424 -3.92034 3.32423 3.39740 3.42026 4.48136 4.53017 5.02145 5.22310 5.29159 5.39388 5.44952 5.60083 5.67791 5.78672 5.84539 5.91851 5.96200 6.06978 6.12680 6.26077 6.35491 6.36846 6.47125 6.55813 6.60879 6.66887 6.82090 6.84616 6.93243 7.00492 7.12723 7.22281 7.29357 7.54379 7.54936 7.79395 7.91805 8.07771 8.50807 9.11448 9.67024 11.15927 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034697 B = 0.007911 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.801504 B = 3538.502515 C = 3973.806306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.070 4.070 5 H 0.053 0.947 6 C 0.024 3.976 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.054 3.946 10 N -0.897 5.897 11 Si 0.881 3.119 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.273 1.273 15 C -0.116 4.116 16 H 0.064 0.936 17 C -0.114 4.114 18 C -0.157 4.157 19 C 0.057 3.943 20 N -0.690 5.690 21 C 0.058 3.942 22 H 0.094 0.906 23 H 0.021 0.979 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.011 0.989 30 H 0.026 0.974 31 H 0.258 0.742 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.336 0.664 39 H 0.066 0.934 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -4.537 -7.184 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 C -0.202 4.202 4 C -0.089 4.089 5 H 0.072 0.928 6 C -0.013 4.013 7 C -0.550 4.550 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.710 3.290 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.198 1.198 15 C -0.136 4.136 16 H 0.083 0.917 17 C -0.152 4.152 18 C -0.197 4.197 19 C -0.073 4.073 20 N -0.317 5.317 21 C -0.071 4.071 22 H 0.113 0.887 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.153 0.847 39 H 0.085 0.915 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.675 -4.954 -7.512 11.827 hybrid contribution -1.163 0.648 1.156 1.763 sum 6.512 -4.307 -6.356 10.067 Atomic orbital electron populations 1.22258 0.95395 1.02681 1.00010 1.20962 0.96163 0.95591 0.96754 1.21912 0.99722 0.97206 1.01315 1.21249 0.91118 0.99241 0.97297 0.92819 1.19269 0.95969 0.95276 0.90760 1.21572 0.93008 1.26003 1.14379 0.91480 1.24994 0.97448 0.95995 0.96176 1.69966 1.34869 1.29412 1.19490 0.86758 0.86617 0.77238 0.78415 1.20901 1.21435 1.19819 1.21899 0.98409 0.98498 0.94770 0.91727 1.21641 0.93681 1.00223 0.99638 1.22280 0.97832 1.00818 0.98723 1.21986 0.99475 0.97160 0.88629 1.60774 1.06156 1.19837 1.44972 1.22212 0.87032 1.00528 0.97343 0.88712 0.96019 0.93695 0.93483 0.93979 0.94593 0.90859 0.97081 0.95601 0.93266 0.92451 0.90944 0.92378 0.92089 0.91534 0.91320 0.84727 0.91502 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.56 37.16 0.28 -2.56 16 2 C -0.08 -1.39 2.40 -90.62 -0.22 -1.60 16 3 C -0.14 -2.59 8.38 37.15 0.31 -2.28 16 4 C -0.07 -1.36 1.35 -90.62 -0.12 -1.48 16 5 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 6 C 0.02 0.58 4.09 -27.89 -0.11 0.47 16 7 C -0.51 -13.54 6.53 -34.44 -0.22 -13.77 16 8 H 0.07 1.73 5.11 -52.49 -0.27 1.46 16 9 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 11 Si 0.88 21.32 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 C -0.12 -1.91 1.58 -90.54 -0.14 -2.06 16 16 H 0.06 1.12 6.77 -51.93 -0.35 0.77 16 17 C -0.11 -1.86 4.99 -26.60 -0.13 -1.99 16 18 C -0.16 -2.09 6.08 -26.65 -0.16 -2.25 16 19 C 0.06 0.70 6.55 -3.84 -0.03 0.68 16 20 N -0.69 -9.09 6.87 -113.82 -0.78 -9.87 16 21 C 0.06 0.84 5.33 -3.83 -0.02 0.82 16 22 H 0.09 2.12 5.61 -51.93 -0.29 1.83 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.87 7.16 -51.93 -0.37 0.50 16 25 H 0.05 0.77 6.01 -51.92 -0.31 0.46 16 26 H 0.04 0.70 6.56 -51.93 -0.34 0.36 16 27 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.07 1.53 6.33 -51.93 -0.33 1.20 16 29 H 0.01 0.29 6.27 -51.93 -0.33 -0.04 16 30 H 0.03 0.67 5.92 -51.92 -0.31 0.37 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.34 6.52 -51.93 -0.34 1.00 16 34 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.34 4.13 8.86 -39.29 -0.35 3.78 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.10 6.26 -51.93 -0.33 0.77 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -27.67 290.18 -8.20 -35.88 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.84 Total: 3.57 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -0.67 Total: -24.61 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.05 Total: -35.50 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.67 -8.20 -35.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.574 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds