Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47610 * 2 1 4 4 C 1.53004 * 109.47056 * 120.00128 * 2 1 3 5 5 H 1.09004 * 109.46949 * 53.66124 * 4 2 1 6 6 C 1.52995 * 109.47100 * 293.66744 * 4 2 1 7 7 C 1.50695 * 109.47527 * 68.63027 * 6 4 2 8 8 H 1.07998 * 119.99677 * 4.94372 * 7 6 4 9 9 C 1.37874 * 120.00119 * 184.93950 * 7 6 4 10 10 N 1.31519 * 120.00297 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00057 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47492 * 90.00197 * 11 9 7 13 13 H 1.48504 * 109.47331 * 210.00233 * 11 9 7 14 14 H 1.48500 * 109.47315 * 329.99903 * 11 9 7 15 15 C 1.52995 * 109.47062 * 173.66257 * 4 2 1 16 16 H 1.09000 * 109.50695 * 65.01029 * 15 4 2 17 17 C 1.53123 * 109.50248 * 185.08711 * 15 4 2 18 18 C 1.53122 * 109.16128 * 177.59485 * 17 15 4 19 19 C 1.53036 * 109.27823 * 302.34731 * 18 17 15 20 20 N 1.46843 * 109.52572 * 59.17832 * 19 18 17 21 21 C 1.46850 * 111.19779 * 298.25961 * 20 19 18 22 22 H 1.09001 * 109.47035 * 313.32166 * 1 2 3 23 23 H 1.09001 * 109.47003 * 73.31321 * 1 2 3 24 24 H 1.08996 * 109.47323 * 193.31676 * 1 2 3 25 25 H 1.09009 * 109.47039 * 239.99979 * 2 1 3 26 26 H 1.09000 * 109.47802 * 176.41716 * 3 2 1 27 27 H 1.09007 * 109.47043 * 296.41405 * 3 2 1 28 28 H 1.08999 * 109.47226 * 56.41327 * 3 2 1 29 29 H 1.09001 * 109.47059 * 188.63591 * 6 4 2 30 30 H 1.09008 * 109.46732 * 308.63034 * 6 4 2 31 31 H 0.96999 * 120.00076 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.52114 * 57.69430 * 17 15 4 33 33 H 1.08998 * 109.57400 * 297.53030 * 17 15 4 34 34 H 1.09009 * 109.50015 * 62.28639 * 18 17 15 35 35 H 1.08992 * 109.50252 * 182.40244 * 18 17 15 36 36 H 1.08997 * 109.46012 * 179.19270 * 19 18 17 37 37 H 1.08993 * 109.46305 * 299.16003 * 19 18 17 38 38 H 1.00904 * 111.00104 * 62.35539 * 20 19 18 39 39 H 1.08999 * 109.45967 * 301.71945 * 21 20 19 40 40 H 1.09001 * 109.45929 * 181.75437 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5869 -1.7110 1.3078 6 6 1.6640 0.0859 2.4934 7 6 0.1701 0.0445 2.6867 8 1 -0.4413 -0.5671 2.0397 9 6 -0.4161 0.7873 3.6894 10 7 0.3283 1.5324 4.4770 11 14 -2.2679 0.7354 3.9295 12 1 -2.6141 -0.3556 4.8756 13 1 -2.7323 2.0340 4.4801 14 1 -2.9296 0.4865 2.6235 15 6 3.5616 -0.8607 1.1722 16 1 4.0197 0.1279 1.2034 17 6 4.0595 -1.6923 2.3576 18 6 5.5749 -1.8776 2.2403 19 6 5.9000 -2.5488 0.9040 20 7 5.4042 -1.7143 -0.1978 21 6 3.9451 -1.5614 -0.1331 22 1 -0.3633 0.7051 0.7476 23 1 -0.3633 0.2951 -0.9844 24 1 -0.3634 -1.0000 0.2367 25 1 1.8933 -0.5139 -0.8901 26 1 3.1282 1.4431 0.0642 27 1 1.7302 1.9374 -0.9204 28 1 1.6253 1.9745 0.8561 29 1 2.1555 -0.3428 3.3668 30 1 1.9855 1.1197 2.3665 31 1 -0.0842 2.0552 5.1822 32 1 3.5717 -2.6670 2.3491 33 1 3.8266 -1.1764 3.2891 34 1 6.0652 -0.9051 2.2879 35 1 5.9292 -2.5047 3.0583 36 1 6.9793 -2.6692 0.8112 37 1 5.4208 -3.5269 0.8628 38 1 5.8620 -0.8151 -0.2048 39 1 3.4750 -2.5442 -0.1695 40 1 3.6046 -0.9646 -0.9793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -46.929931 kcal Electronic energy + Delta-G solvation = -16838.269833 eV Core-core repulsion = 14457.810165 eV Total energy + Delta-G solvation = -2380.459668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56221 -37.78509 -34.56566 -33.00732 -31.88077 -30.23153 -28.03242 -26.73760 -24.88888 -23.37937 -22.70696 -21.20053 -19.51798 -18.34964 -17.00696 -16.57735 -16.14096 -15.72307 -15.34989 -14.92798 -14.84032 -14.24488 -13.79010 -13.59961 -13.37626 -13.16693 -12.96080 -12.80547 -12.65569 -12.44444 -12.38485 -12.14617 -12.03024 -11.91494 -11.68512 -11.39500 -11.17158 -11.04141 -10.72537 -10.49619 -10.27886 -9.15693 -8.09864 -6.11449 1.38827 1.39979 1.49504 2.44755 3.23648 3.46400 3.81288 3.98643 4.08043 4.16470 4.30050 4.36270 4.42803 4.56347 4.64253 4.73948 4.80561 4.88192 4.96436 5.02167 5.06498 5.09556 5.18526 5.21095 5.24520 5.32654 5.35062 5.40866 5.44299 5.52575 5.60662 5.76062 5.88783 6.00131 6.03491 6.14115 6.41698 6.54573 7.01366 7.50892 9.01985 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034697 B = 0.007911 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.801504 B = 3538.502515 C = 3973.806306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.062 4.062 5 H 0.044 0.956 6 C 0.033 3.967 7 C -0.511 4.511 8 H 0.074 0.926 9 C -0.003 4.003 10 N -0.938 5.938 11 Si 0.943 3.057 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.261 1.261 15 C -0.107 4.107 16 H 0.056 0.944 17 C -0.115 4.115 18 C -0.150 4.150 19 C 0.060 3.940 20 N -0.687 5.687 21 C 0.069 3.931 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.033 0.967 29 H -0.019 1.019 30 H 0.002 0.998 31 H 0.256 0.744 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.344 0.656 39 H 0.066 0.934 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 -5.580 -9.267 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.195 4.195 4 C -0.081 4.081 5 H 0.063 0.937 6 C -0.004 4.004 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.200 4.200 10 N -0.580 5.580 11 Si 0.770 3.230 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.185 1.185 15 C -0.128 4.128 16 H 0.074 0.926 17 C -0.153 4.153 18 C -0.189 4.189 19 C -0.069 4.069 20 N -0.314 5.314 21 C -0.061 4.061 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.052 0.948 29 H -0.001 1.001 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.161 0.839 39 H 0.084 0.916 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.167 -6.008 -9.611 13.970 hybrid contribution -1.288 0.969 1.814 2.427 sum 6.879 -5.038 -7.796 11.553 Atomic orbital electron populations 1.22148 0.96247 1.01395 1.00356 1.20984 0.95435 0.95833 0.96989 1.21816 1.00292 0.96730 1.00654 1.21095 0.93479 0.97805 0.95743 0.93719 1.19125 0.94730 0.94479 0.92099 1.21982 0.94246 1.25011 1.13706 0.90763 1.25799 1.01857 0.96032 0.96265 1.70108 1.36708 1.30788 1.20423 0.85764 0.81506 0.77037 0.78733 1.20566 1.21524 1.18462 1.21803 0.95953 0.98513 0.96493 0.92573 1.21601 0.96304 0.99423 0.97970 1.22230 0.95094 1.01363 1.00213 1.22035 1.00919 0.96694 0.87277 1.60785 1.05095 1.20408 1.45153 1.22075 0.88144 1.00136 0.95723 0.92219 0.93394 0.94072 0.90312 0.92793 0.92321 0.94790 1.00111 0.97971 0.93507 0.92784 0.94394 0.92313 0.90940 0.89138 0.91266 0.83891 0.91583 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 7.56 71.98 0.54 -4.87 16 2 C -0.07 -2.58 2.40 -10.79 -0.03 -2.61 16 3 C -0.14 -4.79 8.38 71.98 0.60 -4.19 16 4 C -0.06 -2.42 1.35 -10.80 -0.01 -2.43 16 5 H 0.04 1.82 8.04 -2.38 -0.02 1.80 16 6 C 0.03 1.64 4.09 29.84 0.12 1.77 16 7 C -0.51 -27.77 6.53 25.60 0.17 -27.61 16 8 H 0.07 3.85 5.11 -2.91 -0.01 3.84 16 9 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 10 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 11 Si 0.94 44.47 29.54 68.60 2.03 46.50 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 15 C -0.11 -3.48 1.58 -10.74 -0.02 -3.50 16 16 H 0.06 1.92 6.77 -2.39 -0.02 1.90 16 17 C -0.12 -3.76 4.99 30.68 0.15 -3.61 16 18 C -0.15 -3.74 6.08 30.65 0.19 -3.55 16 19 C 0.06 1.30 6.55 86.33 0.57 1.87 16 20 N -0.69 -15.92 6.87 -514.02 -3.53 -19.44 16 21 C 0.07 1.82 5.33 86.32 0.46 2.28 16 22 H 0.06 2.66 5.61 -2.39 -0.01 2.65 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.54 7.16 -2.39 -0.02 1.52 16 25 H 0.08 2.31 6.01 -2.38 -0.01 2.29 16 26 H 0.05 1.72 6.56 -2.39 -0.02 1.70 16 27 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.03 1.44 6.33 -2.39 -0.02 1.42 16 29 H -0.02 -1.09 6.27 -2.39 -0.01 -1.10 16 30 H 0.00 0.11 5.92 -2.38 -0.01 0.10 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.48 6.52 -2.39 -0.02 1.46 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.34 7.32 8.86 -89.69 -0.79 6.52 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.11 6.26 -2.39 -0.01 2.10 16 Total: -1.00 -61.07 290.18 2.20 -58.86 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.21 Total: 17.20 kcal Atomic # 6 Polarization: -49.39 SS G_CDS: 3.21 Total: -46.18 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -3.24 Total: -76.38 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.07 2.20 -58.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.935 kcal (2) G-P(sol) polarization free energy of solvation -61.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds