Wall clock time and date at job start Mon Mar 30 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47547 * 2 1 4 4 H 1.09000 * 109.47020 * 305.59920 * 3 2 1 5 5 C 1.52998 * 109.47513 * 185.59982 * 3 2 1 6 6 C 1.50708 * 109.46753 * 64.99770 * 5 3 2 7 7 H 1.07992 * 120.00335 * 0.02562 * 6 5 3 8 8 C 1.37881 * 119.99176 * 180.02562 * 6 5 3 9 9 N 1.31508 * 120.00453 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99238 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47307 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47295 * 119.99987 * 10 8 6 13 13 H 1.48500 * 109.46984 * 239.99850 * 10 8 6 14 14 C 1.53002 * 109.47105 * 65.59772 * 3 2 1 15 15 C 1.53116 * 109.52259 * 185.55325 * 14 3 2 16 16 C 1.53035 * 109.27920 * 182.43909 * 15 14 3 17 17 N 1.46854 * 109.52150 * 59.17989 * 16 15 14 18 18 C 1.46900 * 110.99800 * 174.15840 * 17 16 15 19 19 C 1.46845 * 111.19701 * 298.25884 * 17 16 15 20 20 C 1.53037 * 109.52379 * 61.74333 * 19 17 16 21 21 H 1.09002 * 109.47395 * 293.96609 * 1 2 3 22 22 H 1.09001 * 109.46561 * 53.96470 * 1 2 3 23 23 H 1.08995 * 109.47487 * 173.96124 * 1 2 3 24 24 H 1.09008 * 109.47263 * 239.99748 * 2 1 3 25 25 H 1.09005 * 109.47090 * 119.99951 * 2 1 3 26 26 H 1.08991 * 109.47240 * 185.00019 * 5 3 2 27 27 H 1.08997 * 109.47003 * 305.00179 * 5 3 2 28 28 H 0.97000 * 119.99929 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.52194 * 305.74627 * 14 3 2 30 30 H 1.08996 * 109.50615 * 302.38654 * 15 14 3 31 31 H 1.09004 * 109.50421 * 62.50243 * 15 14 3 32 32 H 1.08996 * 109.46647 * 299.16856 * 16 15 14 33 33 H 1.08992 * 109.46511 * 179.19455 * 16 15 14 34 34 H 1.08999 * 109.46635 * 184.20936 * 18 17 16 35 35 H 1.08989 * 109.47339 * 304.20976 * 18 17 16 36 36 H 1.08995 * 109.46937 * 64.21464 * 18 17 16 37 37 H 1.08993 * 109.46637 * 301.72464 * 19 17 16 38 38 H 1.08998 * 109.45852 * 181.75412 * 19 17 16 39 39 H 1.09001 * 109.50316 * 180.88087 * 20 19 17 40 40 H 1.09002 * 109.50430 * 60.75679 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5972 1.9844 -0.8356 5 6 3.5636 1.4447 -0.1408 6 6 3.9443 0.8871 -1.4881 7 1 3.1766 0.5639 -2.1754 8 6 5.2731 0.7897 -1.8432 9 7 6.2080 1.1828 -1.0061 10 14 5.7450 0.0993 -3.5136 11 1 4.5165 -0.2688 -4.2622 12 1 6.5021 1.1237 -4.2768 13 1 6.5918 -1.1067 -3.3294 14 6 1.6483 2.1220 1.3137 15 6 2.0353 3.6024 1.2593 16 6 1.6967 4.2627 2.5977 17 7 2.4275 3.5866 3.6772 18 6 2.2351 4.2800 4.9579 19 6 2.0372 2.1746 3.7794 20 6 2.3860 1.4520 2.4762 21 1 -0.3634 0.4174 0.9391 22 1 -0.3632 0.6046 -0.8311 23 1 -0.3634 -1.0219 -0.1081 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9351 2.4655 -0.0517 27 1 4.0019 0.8288 0.6444 28 1 7.1428 1.1146 -1.2562 29 1 0.5725 2.0310 1.4641 30 1 3.1048 3.6922 1.0694 31 1 1.4807 4.0945 0.4602 32 1 0.6250 4.1847 2.7804 33 1 1.9842 5.3136 2.5673 34 1 2.8458 3.8031 5.7245 35 1 2.5317 5.3236 4.8541 36 1 1.1850 4.2275 5.2452 37 1 0.9639 2.1063 3.9565 38 1 2.5721 1.7090 4.6071 39 1 2.0819 0.4076 2.5466 40 1 3.4611 1.5080 2.3055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260570883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:13 Heat of formation + Delta-G solvation = -29.732180 kcal Electronic energy + Delta-G solvation = -16558.874059 eV Core-core repulsion = 14179.160142 eV Total energy + Delta-G solvation = -2379.713918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.10305 -36.13372 -32.62944 -31.81414 -30.44532 -29.06325 -26.55769 -24.37618 -22.94517 -22.22452 -21.92352 -19.91984 -17.90364 -16.33032 -15.52485 -14.84909 -14.51693 -14.28142 -13.99589 -13.79162 -13.18254 -12.88700 -12.58392 -12.21661 -12.09152 -12.04587 -11.84573 -11.29925 -11.20692 -10.87576 -10.81522 -10.67797 -10.54161 -10.36864 -9.96540 -9.86565 -9.62135 -9.27066 -8.83465 -8.74199 -8.22717 -8.08924 -5.90322 -3.90823 3.35472 3.43315 3.46944 4.16876 4.53317 5.15266 5.22665 5.33554 5.40372 5.45232 5.54955 5.61192 5.74910 5.77927 5.82933 5.85215 5.88932 5.91591 6.03696 6.13096 6.22322 6.34300 6.40146 6.50563 6.58226 6.68971 6.79178 6.83382 6.95741 7.11671 7.23415 7.31460 7.35653 7.40823 7.82854 7.99461 8.12222 8.56043 9.16518 9.71908 11.20669 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029549 B = 0.007474 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.353898 B = 3745.654638 C = 4293.651529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.076 4.076 4 H 0.053 0.947 5 C 0.027 3.973 6 C -0.513 4.513 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.286 1.286 14 C -0.080 4.080 15 C -0.115 4.115 16 C 0.059 3.941 17 N -0.541 5.541 18 C 0.027 3.973 19 C 0.059 3.941 20 C -0.115 4.115 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.258 0.742 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.018 0.982 37 H 0.023 0.977 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 3.130 8.487 13.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.094 4.094 4 H 0.072 0.928 5 C -0.009 4.009 6 C -0.552 4.552 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 C -0.098 4.098 15 C -0.153 4.153 16 C -0.068 4.068 17 N -0.265 5.265 18 C -0.122 4.122 19 C -0.069 4.069 20 C -0.152 4.152 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.317 3.160 8.390 12.930 hybrid contribution -0.502 -0.374 -0.690 0.931 sum -9.818 2.786 7.700 12.785 Atomic orbital electron populations 1.21857 0.98040 1.00132 1.00723 1.21540 0.93150 0.98128 1.02230 1.21230 1.00090 0.93944 0.94160 0.92840 1.19213 0.88077 0.97216 0.96418 1.21350 0.91536 1.40905 1.01385 0.92791 1.25000 0.96863 0.95853 0.96741 1.69976 0.99986 1.48100 1.35360 0.86652 0.78451 0.78724 0.84856 1.19873 1.21186 1.21194 1.21222 0.97926 0.94454 0.96205 1.21713 1.03547 0.95466 0.94538 1.22106 0.94684 0.97849 0.92188 1.61884 1.57657 1.02533 1.04473 1.22328 0.98801 0.99344 0.91712 1.22128 0.97285 0.88250 0.99243 1.21757 1.02995 0.97927 0.92560 0.93614 0.93415 0.94009 0.91172 0.92837 0.96248 0.96240 0.93264 0.93058 0.89796 0.92169 0.95800 0.91416 0.91651 0.91700 0.96340 0.95839 0.91424 0.91863 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.54 37.16 0.35 -1.95 16 2 C -0.11 -2.12 5.18 -26.73 -0.14 -2.25 16 3 C -0.08 -1.53 1.57 -90.62 -0.14 -1.67 16 4 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.03 0.69 3.63 -27.88 -0.10 0.59 16 6 C -0.51 -14.33 8.33 -34.43 -0.29 -14.61 16 7 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 10 Si 0.88 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C -0.08 -1.37 1.91 -90.50 -0.17 -1.54 16 15 C -0.12 -1.94 5.20 -26.65 -0.14 -2.08 16 16 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 17 N -0.54 -8.13 4.91 -242.97 -1.19 -9.32 16 18 C 0.03 0.32 9.59 60.06 0.58 0.89 16 19 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 20 C -0.11 -1.95 4.66 -26.65 -0.12 -2.08 16 21 H 0.04 0.65 6.76 -51.93 -0.35 0.30 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.45 6.81 -51.92 -0.35 1.10 16 25 H 0.05 0.99 6.41 -51.93 -0.33 0.65 16 26 H 0.02 0.53 6.32 -51.93 -0.33 0.20 16 27 H 0.02 0.52 6.59 -51.93 -0.34 0.18 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.05 0.83 6.47 -51.93 -0.34 0.49 16 30 H 0.08 1.66 6.39 -51.93 -0.33 1.32 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.71 8.09 -51.94 -0.42 0.29 16 36 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 39 H 0.06 1.03 6.60 -51.93 -0.34 0.69 16 40 H 0.09 1.72 6.32 -51.93 -0.33 1.40 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -29.36 298.55 -8.49 -37.85 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.20 Total: -2.10 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.31 Total: -21.50 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.46 Total: -35.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.36 -8.49 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260570883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.122 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds