Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47547 * 2 1 4 4 H 1.09000 * 109.47020 * 305.59920 * 3 2 1 5 5 C 1.52998 * 109.47513 * 185.59982 * 3 2 1 6 6 C 1.50708 * 109.46753 * 64.99770 * 5 3 2 7 7 H 1.07992 * 120.00335 * 0.02562 * 6 5 3 8 8 C 1.37881 * 119.99176 * 180.02562 * 6 5 3 9 9 N 1.31508 * 120.00453 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99238 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47307 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47295 * 119.99987 * 10 8 6 13 13 H 1.48500 * 109.46984 * 239.99850 * 10 8 6 14 14 C 1.53002 * 109.47105 * 65.59772 * 3 2 1 15 15 C 1.53116 * 109.52259 * 185.55325 * 14 3 2 16 16 C 1.53035 * 109.27920 * 182.43909 * 15 14 3 17 17 N 1.46854 * 109.52150 * 59.17989 * 16 15 14 18 18 C 1.46900 * 110.99800 * 174.15840 * 17 16 15 19 19 C 1.46845 * 111.19701 * 298.25884 * 17 16 15 20 20 C 1.53037 * 109.52379 * 61.74333 * 19 17 16 21 21 H 1.09002 * 109.47395 * 293.96609 * 1 2 3 22 22 H 1.09001 * 109.46561 * 53.96470 * 1 2 3 23 23 H 1.08995 * 109.47487 * 173.96124 * 1 2 3 24 24 H 1.09008 * 109.47263 * 239.99748 * 2 1 3 25 25 H 1.09005 * 109.47090 * 119.99951 * 2 1 3 26 26 H 1.08991 * 109.47240 * 185.00019 * 5 3 2 27 27 H 1.08997 * 109.47003 * 305.00179 * 5 3 2 28 28 H 0.97000 * 119.99929 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.52194 * 305.74627 * 14 3 2 30 30 H 1.08996 * 109.50615 * 302.38654 * 15 14 3 31 31 H 1.09004 * 109.50421 * 62.50243 * 15 14 3 32 32 H 1.08996 * 109.46647 * 299.16856 * 16 15 14 33 33 H 1.08992 * 109.46511 * 179.19455 * 16 15 14 34 34 H 1.08999 * 109.46635 * 184.20936 * 18 17 16 35 35 H 1.08989 * 109.47339 * 304.20976 * 18 17 16 36 36 H 1.08995 * 109.46937 * 64.21464 * 18 17 16 37 37 H 1.08993 * 109.46637 * 301.72464 * 19 17 16 38 38 H 1.08998 * 109.45852 * 181.75412 * 19 17 16 39 39 H 1.09001 * 109.50316 * 180.88087 * 20 19 17 40 40 H 1.09002 * 109.50430 * 60.75679 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5972 1.9844 -0.8356 5 6 3.5636 1.4447 -0.1408 6 6 3.9443 0.8871 -1.4881 7 1 3.1766 0.5639 -2.1754 8 6 5.2731 0.7897 -1.8432 9 7 6.2080 1.1828 -1.0061 10 14 5.7450 0.0993 -3.5136 11 1 4.5165 -0.2688 -4.2622 12 1 6.5021 1.1237 -4.2768 13 1 6.5918 -1.1067 -3.3294 14 6 1.6483 2.1220 1.3137 15 6 2.0353 3.6024 1.2593 16 6 1.6967 4.2627 2.5977 17 7 2.4275 3.5866 3.6772 18 6 2.2351 4.2800 4.9579 19 6 2.0372 2.1746 3.7794 20 6 2.3860 1.4520 2.4762 21 1 -0.3634 0.4174 0.9391 22 1 -0.3632 0.6046 -0.8311 23 1 -0.3634 -1.0219 -0.1081 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9351 2.4655 -0.0517 27 1 4.0019 0.8288 0.6444 28 1 7.1428 1.1146 -1.2562 29 1 0.5725 2.0310 1.4641 30 1 3.1048 3.6922 1.0694 31 1 1.4807 4.0945 0.4602 32 1 0.6250 4.1847 2.7804 33 1 1.9842 5.3136 2.5673 34 1 2.8458 3.8031 5.7245 35 1 2.5317 5.3236 4.8541 36 1 1.1850 4.2275 5.2452 37 1 0.9639 2.1063 3.9565 38 1 2.5721 1.7090 4.6071 39 1 2.0819 0.4076 2.5466 40 1 3.4611 1.5080 2.3055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260570883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = -47.181704 kcal Electronic energy + Delta-G solvation = -16559.630727 eV Core-core repulsion = 14179.160142 eV Total energy + Delta-G solvation = -2380.470586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44706 -37.56539 -34.72583 -33.14779 -31.71220 -30.83479 -28.01052 -25.94861 -24.22545 -23.94483 -23.34691 -21.25521 -19.47463 -18.45627 -16.79717 -16.48110 -16.02380 -15.51794 -15.44054 -15.21801 -14.58871 -14.34535 -14.16707 -13.99224 -13.38969 -13.26020 -13.22740 -12.90287 -12.62852 -12.52123 -12.42715 -12.25661 -12.08890 -11.91183 -11.57961 -11.40677 -11.34379 -10.83540 -10.60767 -10.58198 -10.41159 -9.16654 -8.12611 -6.20902 1.39058 1.39627 1.52158 2.43863 3.09011 3.20092 3.89461 3.96260 4.01850 4.26540 4.35655 4.41039 4.50287 4.54032 4.58815 4.67093 4.68557 4.75320 4.83922 4.92151 4.94825 5.01741 5.03199 5.18042 5.18771 5.26420 5.30752 5.37730 5.42703 5.47580 5.59918 5.67482 5.80765 5.96948 6.00572 6.22284 6.27171 6.38930 6.97404 7.46452 8.98851 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029549 B = 0.007474 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.353898 B = 3745.654638 C = 4293.651529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.069 4.069 4 H 0.046 0.954 5 C 0.040 3.960 6 C -0.528 4.528 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.955 3.045 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.280 1.280 14 C -0.072 4.072 15 C -0.115 4.115 16 C 0.066 3.934 17 N -0.569 5.569 18 C 0.028 3.972 19 C 0.065 3.935 20 C -0.111 4.111 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.052 0.948 26 H -0.012 1.012 27 H -0.008 1.008 28 H 0.260 0.740 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.119 3.044 8.855 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.087 4.087 4 H 0.064 0.936 5 C 0.003 3.997 6 C -0.567 4.567 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.781 3.219 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.206 1.206 14 C -0.090 4.090 15 C -0.152 4.152 16 C -0.062 4.062 17 N -0.294 5.294 18 C -0.119 4.119 19 C -0.063 4.063 20 C -0.149 4.149 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.007 0.993 27 H 0.011 0.989 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.455 3.076 8.762 14.746 hybrid contribution 0.202 -0.334 -0.789 0.880 sum -11.253 2.742 7.973 14.061 Atomic orbital electron populations 1.21759 0.94635 1.01580 1.01795 1.21462 0.96080 0.96392 1.00880 1.21093 0.96183 0.95596 0.95862 0.93552 1.19020 0.91764 0.94437 0.94481 1.21771 0.91856 1.40566 1.02458 0.92582 1.25899 0.96937 0.96259 1.00776 1.70121 1.00351 1.49438 1.37539 0.85545 0.78374 0.78008 0.80011 1.18712 1.20678 1.20633 1.21155 0.99227 0.94278 0.94372 1.21659 1.01003 0.95803 0.96773 1.22025 0.95657 0.97949 0.90537 1.61840 1.58580 1.02934 1.06068 1.22362 0.99902 0.99471 0.90208 1.22042 0.98468 0.88071 0.97702 1.21660 1.00198 0.98852 0.94190 0.91877 0.93101 0.92284 0.93815 0.92981 0.99346 0.98928 0.93169 0.90406 0.93883 0.91347 0.93902 0.90421 0.91046 0.90927 0.94850 0.93897 0.90583 0.91263 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.54 71.98 0.69 -3.25 16 2 C -0.11 -4.10 5.18 30.59 0.16 -3.94 16 3 C -0.07 -2.81 1.57 -10.79 -0.02 -2.83 16 4 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 5 C 0.04 2.11 3.63 29.85 0.11 2.22 16 6 C -0.53 -30.42 8.33 25.60 0.21 -30.21 16 7 H 0.06 3.13 7.08 -2.91 -0.02 3.11 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 9 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 10 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 11 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 C -0.07 -2.43 1.91 -10.71 -0.02 -2.45 16 15 C -0.11 -3.86 5.20 30.64 0.16 -3.70 16 16 C 0.07 1.81 5.46 86.32 0.47 2.28 16 17 N -0.57 -16.23 4.91 -922.63 -4.53 -20.76 16 18 C 0.03 0.60 9.59 127.69 1.22 1.82 16 19 C 0.06 1.79 5.46 86.33 0.47 2.26 16 20 C -0.11 -3.78 4.66 30.65 0.14 -3.64 16 21 H 0.06 1.56 6.76 -2.39 -0.02 1.54 16 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.82 6.81 -2.38 -0.02 1.81 16 25 H 0.05 1.91 6.41 -2.38 -0.02 1.90 16 26 H -0.01 -0.69 6.32 -2.39 -0.02 -0.70 16 27 H -0.01 -0.44 6.59 -2.39 -0.02 -0.45 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.08 2.27 6.47 -2.39 -0.02 2.26 16 30 H 0.04 1.79 6.39 -2.39 -0.02 1.78 16 31 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 36 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 39 H 0.07 2.22 6.60 -2.39 -0.02 2.20 16 40 H 0.04 1.82 6.32 -2.39 -0.02 1.80 16 Total: -1.00 -65.24 298.55 2.82 -62.42 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.98 Total: 9.92 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 4.06 Total: -41.07 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -4.25 Total: -78.77 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -65.24 2.82 -62.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260570883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.243 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds