Wall clock time and date at job start Mon Mar 30 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47076 * 2 1 4 4 H 1.09005 * 109.47548 * 304.61660 * 3 2 1 5 5 C 1.52999 * 109.47369 * 184.61477 * 3 2 1 6 6 C 1.50698 * 109.47028 * 65.26887 * 5 3 2 7 7 H 1.08003 * 120.00169 * 359.97438 * 6 5 3 8 8 C 1.37874 * 120.00278 * 180.02562 * 6 5 3 9 9 N 1.31518 * 119.99852 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00502 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46674 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47005 * 120.00018 * 10 8 6 13 13 H 1.48496 * 109.47184 * 240.00216 * 10 8 6 14 14 C 1.53002 * 109.47032 * 64.61544 * 3 2 1 15 15 H 1.09002 * 109.68148 * 306.25330 * 14 3 2 16 16 C 1.50459 * 109.57590 * 66.57736 * 14 3 2 17 17 C 1.54295 * 113.02784 * 211.97066 * 16 14 3 18 18 C 1.54070 * 112.28676 * 318.29864 * 17 16 14 19 19 N 1.44261 * 111.98791 * 318.91585 * 18 17 16 20 20 C 1.47810 * 109.47480 * 96.43167 * 19 18 17 21 21 C 1.45862 * 112.91127 * 276.75940 * 20 19 18 22 22 H 1.08997 * 109.47327 * 54.00689 * 1 2 3 23 23 H 1.09009 * 109.47233 * 174.00303 * 1 2 3 24 24 H 1.09001 * 109.47179 * 293.99927 * 1 2 3 25 25 H 1.09001 * 109.46513 * 240.00036 * 2 1 3 26 26 H 1.09002 * 109.46945 * 120.00297 * 2 1 3 27 27 H 1.08995 * 109.47085 * 185.27253 * 5 3 2 28 28 H 1.08999 * 109.47060 * 305.27192 * 5 3 2 29 29 H 0.96995 * 120.00094 * 179.97438 * 9 8 6 30 30 H 1.09003 * 108.77049 * 332.88421 * 16 14 3 31 31 H 1.09002 * 108.77403 * 91.16965 * 16 14 3 32 32 H 1.08996 * 108.91566 * 79.02680 * 17 16 14 33 33 H 1.09004 * 108.91588 * 197.57868 * 17 16 14 34 34 H 1.08997 * 108.97555 * 79.56538 * 18 17 16 35 35 H 1.08998 * 108.97692 * 198.35057 * 18 17 16 36 36 H 1.00906 * 111.00183 * 333.55037 * 19 18 17 37 37 H 1.08999 * 108.79106 * 155.87372 * 20 19 18 38 38 H 1.09004 * 108.78752 * 37.64305 * 20 19 18 39 39 H 1.08994 * 109.05235 * 181.86645 * 21 20 19 40 40 H 1.09005 * 109.05386 * 300.77573 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6107 1.9797 -0.8458 5 6 3.5656 1.4441 -0.1161 6 6 3.9679 0.8850 -1.4564 7 1 3.2113 0.5606 -2.1554 8 6 5.3021 0.7867 -1.7900 9 7 6.2236 1.1804 -0.9382 10 14 5.8010 0.0931 -3.4512 11 1 4.5845 -0.2751 -4.2193 12 1 6.5704 1.1161 -4.2039 13 1 6.6444 -1.1126 -3.2511 14 6 1.6269 2.1294 1.3032 15 1 0.5504 2.0328 1.4439 16 6 2.3458 1.4899 2.4600 17 6 1.5201 1.4991 3.7633 18 6 0.7873 2.8367 3.9814 19 7 1.6130 3.9677 3.6346 20 6 1.3015 4.4010 2.2562 21 6 2.0090 3.6253 1.2436 22 1 -0.3634 0.6039 -0.8314 23 1 -0.3634 -1.0221 -0.1074 24 1 -0.3633 0.4180 0.9388 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9360 2.4648 -0.0220 28 1 3.9909 0.8287 0.6768 29 1 7.1622 1.1109 -1.1727 30 1 2.5796 0.4574 2.2002 31 1 3.2783 2.0270 2.6337 32 1 0.7845 0.6958 3.7213 33 1 2.1880 1.3206 4.6061 34 1 -0.1122 2.8525 3.3660 35 1 0.5005 2.9169 5.0299 36 1 2.5921 3.7436 3.7306 37 1 1.5739 5.4509 2.1481 38 1 0.2289 4.2998 2.0902 39 1 1.7604 4.0170 0.2573 40 1 3.0825 3.7251 1.4045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:28 Heat of formation + Delta-G solvation = -35.992852 kcal Electronic energy + Delta-G solvation = -16753.909378 eV Core-core repulsion = 14373.923977 eV Total energy + Delta-G solvation = -2379.985401 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46611 -35.99946 -32.63853 -32.25477 -31.40797 -28.96075 -25.87963 -25.02182 -23.58437 -22.08697 -20.97393 -20.39324 -17.76422 -16.48527 -15.40882 -15.11972 -14.78407 -14.48628 -14.27490 -13.58851 -13.14151 -13.00034 -12.82116 -12.38992 -12.04686 -11.93294 -11.82596 -11.16805 -10.99073 -10.82477 -10.77017 -10.64522 -10.48631 -10.44543 -10.15538 -9.93264 -9.76440 -9.33884 -8.92704 -8.87006 -8.30401 -8.22959 -5.97390 -3.98048 3.30991 3.38982 3.42573 4.47764 4.58396 4.95543 5.06690 5.25910 5.38508 5.41542 5.49663 5.56361 5.69792 5.75040 5.79097 5.92429 5.94491 5.98360 6.12913 6.18280 6.26505 6.35994 6.44189 6.47812 6.56193 6.61198 6.65720 6.77323 6.83030 7.07802 7.14654 7.23336 7.32292 7.58104 7.73428 7.89404 8.04208 8.48502 9.09082 9.65312 11.13781 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032570 B = 0.007522 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.476915 B = 3721.759295 C = 4089.098108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.076 4.076 4 H 0.054 0.946 5 C 0.029 3.971 6 C -0.514 4.514 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.076 4.076 15 H 0.058 0.942 16 C -0.117 4.117 17 C -0.151 4.151 18 C 0.056 3.944 19 N -0.676 5.676 20 C 0.055 3.945 21 C -0.149 4.149 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.258 0.742 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.343 0.657 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 1.940 7.029 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.094 4.094 4 H 0.073 0.927 5 C -0.008 4.008 6 C -0.552 4.552 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.714 3.286 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.095 4.095 15 H 0.077 0.923 16 C -0.155 4.155 17 C -0.191 4.191 18 C -0.075 4.075 19 N -0.305 5.305 20 C -0.074 4.074 21 C -0.188 4.188 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.418 2.443 7.366 12.991 hybrid contribution 0.898 -1.193 -1.522 2.132 sum -9.520 1.249 5.844 11.240 Atomic orbital electron populations 1.21855 0.97913 1.00199 1.00770 1.21548 0.93282 0.98063 1.02167 1.21297 0.99933 0.93953 0.94234 0.92748 1.19165 0.88071 0.97027 0.96562 1.21340 0.91530 1.40914 1.01457 0.92746 1.25004 0.96899 0.95786 0.96779 1.69970 1.00300 1.48115 1.35175 0.86632 0.78551 0.78761 0.84636 1.19828 1.21127 1.21132 1.21007 0.98702 0.93796 0.95979 0.92331 1.21508 0.98428 1.02497 0.93061 1.22664 0.99717 0.98361 0.98320 1.21840 0.96525 0.88578 1.00522 1.61135 1.10467 1.35255 1.23675 1.20972 0.99891 0.99102 0.87474 1.21311 1.01577 0.96079 0.99836 0.93392 0.93966 0.93531 0.91181 0.92820 0.96551 0.96514 0.93224 0.90999 0.92371 0.92292 0.92439 0.92152 0.91935 0.83929 0.91640 0.92095 0.91558 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.52 37.16 0.35 -1.91 16 2 C -0.11 -2.08 5.16 -26.73 -0.14 -2.22 16 3 C -0.08 -1.49 1.52 -90.62 -0.14 -1.63 16 4 H 0.05 1.11 8.04 -51.93 -0.42 0.70 16 5 C 0.03 0.71 3.87 -27.88 -0.11 0.60 16 6 C -0.51 -14.21 8.34 -34.44 -0.29 -14.49 16 7 H 0.05 1.48 7.09 -52.48 -0.37 1.11 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 C -0.08 -1.25 1.52 -91.10 -0.14 -1.38 16 15 H 0.06 0.90 5.43 -51.93 -0.28 0.62 16 16 C -0.12 -1.88 3.57 -27.32 -0.10 -1.98 16 17 C -0.15 -1.97 5.92 -25.49 -0.15 -2.13 16 18 C 0.06 0.70 6.01 -4.68 -0.03 0.67 16 19 N -0.68 -9.02 6.91 -118.15 -0.82 -9.84 16 20 C 0.05 0.74 5.87 -6.70 -0.04 0.70 16 21 C -0.15 -2.35 4.09 -29.32 -0.12 -2.47 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 24 H 0.05 0.65 6.72 -51.93 -0.35 0.30 16 25 H 0.07 1.43 6.85 -51.93 -0.36 1.08 16 26 H 0.05 0.98 6.22 -51.93 -0.32 0.66 16 27 H 0.02 0.43 6.77 -51.93 -0.35 0.08 16 28 H 0.02 0.44 6.91 -51.93 -0.36 0.08 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.07 1.27 5.23 -51.93 -0.27 1.00 16 31 H 0.06 1.00 6.78 -51.93 -0.35 0.65 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.34 4.68 7.35 -39.29 -0.29 4.39 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.79 7.24 -51.93 -0.38 0.41 16 39 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 40 H 0.07 1.20 6.78 -51.93 -0.35 0.85 16 LS Contribution 290.93 15.07 4.38 4.38 Total: -1.00 -28.44 290.93 -8.58 -37.02 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.87 Total: 2.51 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -0.99 Total: -24.75 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.08 Total: -35.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.44 -8.58 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.023 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds