Wall clock time and date at job start Mon Mar 30 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47076 * 2 1 4 4 H 1.09005 * 109.47548 * 304.61660 * 3 2 1 5 5 C 1.52999 * 109.47369 * 184.61477 * 3 2 1 6 6 C 1.50698 * 109.47028 * 65.26887 * 5 3 2 7 7 H 1.08003 * 120.00169 * 359.97438 * 6 5 3 8 8 C 1.37874 * 120.00278 * 180.02562 * 6 5 3 9 9 N 1.31518 * 119.99852 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00502 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46674 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47005 * 120.00018 * 10 8 6 13 13 H 1.48496 * 109.47184 * 240.00216 * 10 8 6 14 14 C 1.53002 * 109.47032 * 64.61544 * 3 2 1 15 15 H 1.09002 * 109.68148 * 306.25330 * 14 3 2 16 16 C 1.50459 * 109.57590 * 66.57736 * 14 3 2 17 17 C 1.54295 * 113.02784 * 211.97066 * 16 14 3 18 18 C 1.54070 * 112.28676 * 318.29864 * 17 16 14 19 19 N 1.44261 * 111.98791 * 318.91585 * 18 17 16 20 20 C 1.47810 * 109.47480 * 96.43167 * 19 18 17 21 21 C 1.45862 * 112.91127 * 276.75940 * 20 19 18 22 22 H 1.08997 * 109.47327 * 54.00689 * 1 2 3 23 23 H 1.09009 * 109.47233 * 174.00303 * 1 2 3 24 24 H 1.09001 * 109.47179 * 293.99927 * 1 2 3 25 25 H 1.09001 * 109.46513 * 240.00036 * 2 1 3 26 26 H 1.09002 * 109.46945 * 120.00297 * 2 1 3 27 27 H 1.08995 * 109.47085 * 185.27253 * 5 3 2 28 28 H 1.08999 * 109.47060 * 305.27192 * 5 3 2 29 29 H 0.96995 * 120.00094 * 179.97438 * 9 8 6 30 30 H 1.09003 * 108.77049 * 332.88421 * 16 14 3 31 31 H 1.09002 * 108.77403 * 91.16965 * 16 14 3 32 32 H 1.08996 * 108.91566 * 79.02680 * 17 16 14 33 33 H 1.09004 * 108.91588 * 197.57868 * 17 16 14 34 34 H 1.08997 * 108.97555 * 79.56538 * 18 17 16 35 35 H 1.08998 * 108.97692 * 198.35057 * 18 17 16 36 36 H 1.00906 * 111.00183 * 333.55037 * 19 18 17 37 37 H 1.08999 * 108.79106 * 155.87372 * 20 19 18 38 38 H 1.09004 * 108.78752 * 37.64305 * 20 19 18 39 39 H 1.08994 * 109.05235 * 181.86645 * 21 20 19 40 40 H 1.09005 * 109.05386 * 300.77573 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6107 1.9797 -0.8458 5 6 3.5656 1.4441 -0.1161 6 6 3.9679 0.8850 -1.4564 7 1 3.2113 0.5606 -2.1554 8 6 5.3021 0.7867 -1.7900 9 7 6.2236 1.1804 -0.9382 10 14 5.8010 0.0931 -3.4512 11 1 4.5845 -0.2751 -4.2193 12 1 6.5704 1.1161 -4.2039 13 1 6.6444 -1.1126 -3.2511 14 6 1.6269 2.1294 1.3032 15 1 0.5504 2.0328 1.4439 16 6 2.3458 1.4899 2.4600 17 6 1.5201 1.4991 3.7633 18 6 0.7873 2.8367 3.9814 19 7 1.6130 3.9677 3.6346 20 6 1.3015 4.4010 2.2562 21 6 2.0090 3.6253 1.2436 22 1 -0.3634 0.6039 -0.8314 23 1 -0.3634 -1.0221 -0.1074 24 1 -0.3633 0.4180 0.9388 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9360 2.4648 -0.0220 28 1 3.9909 0.8287 0.6768 29 1 7.1622 1.1109 -1.1727 30 1 2.5796 0.4574 2.2002 31 1 3.2783 2.0270 2.6337 32 1 0.7845 0.6958 3.7213 33 1 2.1880 1.3206 4.6061 34 1 -0.1122 2.8525 3.3660 35 1 0.5005 2.9169 5.0299 36 1 2.5921 3.7436 3.7306 37 1 1.5739 5.4509 2.1481 38 1 0.2289 4.2998 2.0902 39 1 1.7604 4.0170 0.2573 40 1 3.0825 3.7251 1.4045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:27 Heat of formation + Delta-G solvation = -53.068642 kcal Electronic energy + Delta-G solvation = -16754.649840 eV Core-core repulsion = 14373.923977 eV Total energy + Delta-G solvation = -2380.725863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76208 -37.42490 -34.71971 -33.41937 -32.69255 -30.76192 -27.46297 -26.25279 -25.08905 -23.83429 -22.17005 -21.70795 -19.26713 -18.53248 -16.69375 -16.59401 -16.27662 -15.94663 -15.56319 -14.96043 -14.60555 -14.42258 -14.16195 -13.99032 -13.62284 -13.45938 -13.10296 -12.87198 -12.59578 -12.49650 -12.23490 -12.11112 -11.97792 -11.79462 -11.61319 -11.46574 -11.27795 -10.91934 -10.72248 -10.63066 -10.45257 -9.31534 -8.17362 -6.25536 1.36365 1.37344 1.49525 2.40499 3.15764 3.51774 3.72580 3.85902 4.01452 4.20111 4.28802 4.37018 4.40954 4.46269 4.50533 4.70479 4.73997 4.83100 4.85790 4.95900 5.08323 5.12158 5.14893 5.18237 5.23378 5.27361 5.34969 5.36364 5.38667 5.45126 5.55964 5.60959 5.76326 5.89952 5.96070 6.19815 6.33901 6.49076 6.92158 7.42269 8.94097 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032570 B = 0.007522 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.476915 B = 3721.759295 C = 4089.098108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.069 4.069 4 H 0.046 0.954 5 C 0.041 3.959 6 C -0.530 4.530 7 H 0.055 0.945 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.955 3.045 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.280 1.280 14 C -0.067 4.067 15 H 0.082 0.918 16 C -0.113 4.113 17 C -0.142 4.142 18 C 0.057 3.943 19 N -0.678 5.678 20 C 0.059 3.941 21 C -0.142 4.142 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.051 0.949 27 H -0.012 1.012 28 H -0.010 1.010 29 H 0.260 0.740 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.339 0.661 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.239 1.708 7.237 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.088 4.088 4 H 0.065 0.935 5 C 0.004 3.996 6 C -0.568 4.568 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.780 3.220 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.085 4.085 15 H 0.100 0.900 16 C -0.150 4.150 17 C -0.181 4.181 18 C -0.074 4.074 19 N -0.306 5.306 20 C -0.070 4.070 21 C -0.181 4.181 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.006 0.994 28 H 0.009 0.991 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.494 2.209 7.575 14.777 hybrid contribution 1.585 -1.122 -1.578 2.502 sum -10.909 1.087 5.997 12.496 Atomic orbital electron populations 1.21761 0.94551 1.01603 1.01859 1.21469 0.96182 0.96441 1.00741 1.21169 0.96086 0.95533 0.96008 0.93540 1.18981 0.91729 0.94374 0.94554 1.21759 0.91838 1.40624 1.02568 0.92650 1.25889 0.97036 0.96204 1.00673 1.70102 1.00649 1.49384 1.37268 0.85552 0.78392 0.78065 0.79990 1.18777 1.20601 1.20588 1.20917 0.99851 0.93697 0.94065 0.89972 1.21422 0.98186 1.00658 0.94763 1.22585 0.99699 0.99543 0.96307 1.21910 0.96272 0.87488 1.01687 1.61183 1.10420 1.35840 1.23204 1.20928 1.00315 0.98901 0.86812 1.21257 1.00142 0.96148 1.00541 0.93056 0.92323 0.91772 0.93880 0.93072 0.99375 0.99118 0.93107 0.93035 0.94688 0.90865 0.91893 0.91356 0.90305 0.84379 0.91032 0.90487 0.92168 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.52 71.98 0.69 -3.18 16 2 C -0.11 -4.05 5.16 30.59 0.16 -3.89 16 3 C -0.07 -2.77 1.52 -10.80 -0.02 -2.78 16 4 H 0.05 1.91 8.04 -2.38 -0.02 1.89 16 5 C 0.04 2.10 3.87 29.85 0.12 2.21 16 6 C -0.53 -30.10 8.34 25.60 0.21 -29.89 16 7 H 0.06 3.07 7.09 -2.91 -0.02 3.04 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 9 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 10 Si 0.95 44.99 29.54 68.60 2.03 47.01 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 C -0.07 -2.15 1.52 -11.10 -0.02 -2.16 16 15 H 0.08 2.29 5.43 -2.39 -0.01 2.27 16 16 C -0.11 -3.60 3.57 30.21 0.11 -3.49 16 17 C -0.14 -3.40 5.92 31.40 0.19 -3.22 16 18 C 0.06 1.24 6.01 87.16 0.52 1.76 16 19 N -0.68 -16.82 6.91 -527.70 -3.65 -20.46 16 20 C 0.06 1.50 5.87 83.94 0.49 2.00 16 21 C -0.14 -4.47 4.09 28.92 0.12 -4.35 16 22 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.06 1.55 6.72 -2.39 -0.02 1.53 16 25 H 0.04 1.78 6.85 -2.39 -0.02 1.76 16 26 H 0.05 1.87 6.22 -2.39 -0.01 1.86 16 27 H -0.01 -0.69 6.77 -2.39 -0.02 -0.70 16 28 H -0.01 -0.54 6.91 -2.39 -0.02 -0.55 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.05 1.85 5.23 -2.39 -0.01 1.84 16 31 H 0.03 1.25 6.78 -2.39 -0.02 1.24 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.41 6.51 -2.39 -0.02 1.40 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.34 9.01 7.35 -89.69 -0.66 8.35 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.74 7.24 -2.39 -0.02 1.73 16 39 H 0.06 1.94 7.95 -2.39 -0.02 1.93 16 40 H 0.04 1.47 6.78 -2.38 -0.02 1.46 16 Total: -1.00 -62.35 290.93 2.04 -60.31 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.34 Total: 16.73 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 3.03 Total: -46.58 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -3.36 Total: -77.47 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -62.35 2.04 -60.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.237 kcal (2) G-P(sol) polarization free energy of solvation -62.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds