Wall clock time and date at job start Mon Mar 30 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 H 1.09005 * 109.47287 * 305.10123 * 3 2 1 5 5 C 1.53001 * 109.47411 * 185.10090 * 3 2 1 6 6 C 1.50692 * 109.47227 * 65.88730 * 5 3 2 7 7 H 1.08005 * 119.99987 * 0.02562 * 6 5 3 8 8 C 1.37877 * 120.00053 * 180.02562 * 6 5 3 9 9 N 1.31516 * 119.99844 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00069 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47103 * 89.99753 * 10 8 6 12 12 H 1.48500 * 109.46870 * 209.99837 * 10 8 6 13 13 H 1.48501 * 109.46868 * 329.99844 * 10 8 6 14 14 C 1.52998 * 109.47166 * 65.09670 * 3 2 1 15 15 H 1.08994 * 109.57347 * 305.85418 * 14 3 2 16 16 C 1.54523 * 109.57340 * 185.60118 * 14 3 2 17 17 C 1.45884 * 111.67009 * 162.95893 * 16 14 3 18 18 C 1.53976 * 112.66890 * 61.50095 * 17 16 14 19 19 N 1.44300 * 108.31220 * 278.59624 * 18 17 16 20 20 C 1.47935 * 113.64783 * 95.39498 * 19 18 17 21 21 C 1.50539 * 109.57328 * 66.23014 * 14 3 2 22 22 H 1.09002 * 109.47298 * 54.03807 * 1 2 3 23 23 H 1.09008 * 109.47075 * 174.03548 * 1 2 3 24 24 H 1.09004 * 109.47484 * 294.03199 * 1 2 3 25 25 H 1.09000 * 109.47540 * 119.99799 * 2 1 3 26 26 H 1.08999 * 109.47044 * 240.00049 * 2 1 3 27 27 H 1.09004 * 109.47432 * 185.89304 * 5 3 2 28 28 H 1.09002 * 109.47021 * 305.89189 * 5 3 2 29 29 H 0.97005 * 120.00092 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.04654 * 283.52237 * 16 14 3 31 31 H 1.09001 * 109.03736 * 42.47637 * 16 14 3 32 32 H 1.09001 * 108.83952 * 182.32257 * 17 16 14 33 33 H 1.08994 * 108.84259 * 300.67722 * 17 16 14 34 34 H 1.09008 * 109.69588 * 38.29822 * 18 17 16 35 35 H 1.09000 * 109.69917 * 158.88830 * 18 17 16 36 36 H 1.00906 * 111.00031 * 221.34861 * 19 18 17 37 37 H 1.09002 * 108.71008 * 79.13517 * 20 19 18 38 38 H 1.08997 * 108.71414 * 197.26910 * 20 19 18 39 39 H 1.08999 * 108.78400 * 332.45413 * 21 14 3 40 40 H 1.09003 * 108.78995 * 90.66697 * 21 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6039 1.9821 -0.8408 5 6 3.5646 1.4445 -0.1283 6 6 3.9557 0.9035 -1.4792 7 1 3.1932 0.5899 -2.1768 8 6 5.2872 0.8087 -1.8247 9 7 5.6285 0.3369 -3.0039 10 14 6.6061 1.3504 -0.6179 11 1 7.0013 0.1993 0.2330 12 1 7.7905 1.8419 -1.3668 13 1 6.0751 2.4404 0.2394 14 6 1.6372 2.1258 1.3083 15 1 0.5607 2.0340 1.4520 16 6 2.0266 3.6201 1.2531 17 6 1.3286 4.3967 2.2720 18 6 1.6651 3.9370 3.7025 19 7 0.8571 2.7815 4.0093 20 6 1.5447 1.4947 3.7649 21 6 2.3592 1.4772 2.4591 22 1 -0.3634 0.6035 -0.8318 23 1 -0.3634 -1.0222 -0.1068 24 1 -0.3634 0.4185 0.9386 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.9367 2.4637 -0.0233 28 1 3.9957 0.8181 0.6527 29 1 6.5652 0.2706 -3.2472 30 1 3.1013 3.7137 1.4089 31 1 1.7740 4.0172 0.2699 32 1 1.6044 5.4458 2.1653 33 1 0.2545 4.2993 2.1144 34 1 2.7211 3.6739 3.7650 35 1 1.4433 4.7381 4.4076 36 1 0.5023 2.8285 4.9528 37 1 2.2170 1.2936 4.5991 38 1 0.7979 0.7021 3.7198 39 1 2.5797 0.4424 2.1967 40 1 3.2996 2.0029 2.6247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:32 Heat of formation + Delta-G solvation = -30.447587 kcal Electronic energy + Delta-G solvation = -16786.624710 eV Core-core repulsion = 14406.879770 eV Total energy + Delta-G solvation = -2379.744940 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21699 -35.95657 -32.86139 -32.47642 -31.15880 -29.43920 -26.10626 -25.18431 -23.54758 -21.66757 -20.69684 -19.97095 -17.81337 -16.94839 -16.30426 -15.30006 -14.43097 -14.30946 -14.12233 -13.43582 -13.37278 -13.10156 -12.64139 -12.44420 -12.35393 -12.21102 -11.59235 -11.28100 -10.98488 -10.87626 -10.68842 -10.66409 -10.45858 -10.15416 -10.05690 -9.91949 -9.62508 -9.33360 -9.06529 -8.86529 -8.45790 -8.23482 -5.97757 -3.93349 3.32900 3.40564 3.44426 4.27940 4.50306 5.02543 5.12012 5.24167 5.31077 5.37235 5.39003 5.60055 5.70359 5.75638 5.82707 5.89248 5.95506 6.00417 6.11215 6.22935 6.34630 6.43464 6.46679 6.54165 6.56902 6.66231 6.72492 6.75639 6.84881 6.99545 7.15245 7.23446 7.29553 7.44287 7.49118 7.60161 7.90355 8.63539 9.09218 9.66206 11.15986 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026954 B = 0.008851 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.572237 B = 3162.793607 C = 3662.639032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.069 4.069 4 H 0.060 0.940 5 C -0.009 4.009 6 C -0.511 4.511 7 H 0.072 0.928 8 C 0.064 3.936 9 N -0.907 5.907 10 Si 0.876 3.124 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.266 1.266 14 C -0.071 4.071 15 H 0.073 0.927 16 C -0.114 4.114 17 C -0.111 4.111 18 C 0.067 3.933 19 N -0.698 5.698 20 C 0.066 3.934 21 C -0.118 4.118 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.337 0.663 37 H 0.021 0.979 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 4.697 13.574 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.088 4.088 4 H 0.079 0.921 5 C -0.046 4.046 6 C -0.549 4.549 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.547 5.547 10 Si 0.703 3.297 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.191 1.191 14 C -0.089 4.089 15 H 0.091 0.909 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.063 4.063 19 N -0.330 5.330 20 C -0.062 4.062 21 C -0.155 4.155 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.034 0.966 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.852 4.658 12.852 16.286 hybrid contribution 1.541 0.212 1.268 2.007 sum -7.311 4.870 14.120 16.630 Atomic orbital electron populations 1.21840 0.97613 1.00241 1.01011 1.21551 0.93657 0.97695 1.02226 1.21152 0.98078 0.94574 0.94955 0.92119 1.19657 0.91561 0.96343 0.97026 1.21228 0.92832 1.41248 0.99612 0.90972 1.25026 0.98644 0.94967 0.94963 1.69922 1.17176 1.47072 1.20516 0.86840 0.81610 0.79520 0.81686 1.20504 1.21600 1.19081 1.20938 0.99837 0.93550 0.94604 0.90919 1.20623 1.00102 0.95838 0.98580 1.20514 1.01533 0.98335 0.94499 1.21600 0.95773 0.91870 0.97079 1.59038 1.41687 1.01952 1.30293 1.22263 0.96310 0.90742 0.96881 1.21560 0.98130 1.02348 0.93501 0.93313 0.93978 0.93251 0.92996 0.90821 0.96646 0.97243 0.92952 0.92617 0.92223 0.93095 0.91600 0.94177 0.92453 0.84535 0.96044 0.91467 0.90555 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.53 37.16 0.35 -1.96 16 2 C -0.11 -2.11 5.17 -26.73 -0.14 -2.25 16 3 C -0.07 -1.35 1.51 -90.62 -0.14 -1.49 16 4 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 5 C -0.01 -0.20 2.93 -27.89 -0.08 -0.29 16 6 C -0.51 -14.48 8.89 -34.44 -0.31 -14.78 16 7 H 0.07 2.20 7.39 -52.48 -0.39 1.81 16 8 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 9 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 10 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 13 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 14 C -0.07 -1.16 1.55 -91.05 -0.14 -1.30 16 15 H 0.07 1.17 6.10 -51.93 -0.32 0.86 16 16 C -0.11 -1.81 4.07 -29.30 -0.12 -1.93 16 17 C -0.11 -1.46 5.37 -29.59 -0.16 -1.62 16 18 C 0.07 0.80 6.15 -4.71 -0.03 0.77 16 19 N -0.70 -8.28 6.18 -113.80 -0.70 -8.98 16 20 C 0.07 0.85 6.44 -2.78 -0.02 0.83 16 21 C -0.12 -1.83 3.55 -27.49 -0.10 -1.93 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.05 0.71 6.74 -51.93 -0.35 0.36 16 25 H 0.05 0.92 6.18 -51.93 -0.32 0.60 16 26 H 0.07 1.57 6.88 -51.93 -0.36 1.21 16 27 H 0.02 0.37 5.79 -51.93 -0.30 0.07 16 28 H 0.01 0.22 6.39 -51.93 -0.33 -0.11 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.06 0.96 6.77 -51.93 -0.35 0.61 16 31 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.04 0.53 6.79 -51.92 -0.35 0.17 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.34 3.24 8.89 -39.29 -0.35 2.89 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.26 5.25 -51.93 -0.27 0.98 16 40 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -29.90 290.06 -8.19 -38.08 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.99 Total: 0.78 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -0.97 Total: -24.16 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.07 Total: -36.47 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.90 -8.19 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.635 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds