Wall clock time and date at job start Mon Mar 30 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 H 1.09005 * 109.47287 * 305.10123 * 3 2 1 5 5 C 1.53001 * 109.47411 * 185.10090 * 3 2 1 6 6 C 1.50692 * 109.47227 * 65.88730 * 5 3 2 7 7 H 1.08005 * 119.99987 * 0.02562 * 6 5 3 8 8 C 1.37877 * 120.00053 * 180.02562 * 6 5 3 9 9 N 1.31516 * 119.99844 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00069 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47103 * 89.99753 * 10 8 6 12 12 H 1.48500 * 109.46870 * 209.99837 * 10 8 6 13 13 H 1.48501 * 109.46868 * 329.99844 * 10 8 6 14 14 C 1.52998 * 109.47166 * 65.09670 * 3 2 1 15 15 H 1.08994 * 109.57347 * 305.85418 * 14 3 2 16 16 C 1.54523 * 109.57340 * 185.60118 * 14 3 2 17 17 C 1.45884 * 111.67009 * 162.95893 * 16 14 3 18 18 C 1.53976 * 112.66890 * 61.50095 * 17 16 14 19 19 N 1.44300 * 108.31220 * 278.59624 * 18 17 16 20 20 C 1.47935 * 113.64783 * 95.39498 * 19 18 17 21 21 C 1.50539 * 109.57328 * 66.23014 * 14 3 2 22 22 H 1.09002 * 109.47298 * 54.03807 * 1 2 3 23 23 H 1.09008 * 109.47075 * 174.03548 * 1 2 3 24 24 H 1.09004 * 109.47484 * 294.03199 * 1 2 3 25 25 H 1.09000 * 109.47540 * 119.99799 * 2 1 3 26 26 H 1.08999 * 109.47044 * 240.00049 * 2 1 3 27 27 H 1.09004 * 109.47432 * 185.89304 * 5 3 2 28 28 H 1.09002 * 109.47021 * 305.89189 * 5 3 2 29 29 H 0.97005 * 120.00092 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.04654 * 283.52237 * 16 14 3 31 31 H 1.09001 * 109.03736 * 42.47637 * 16 14 3 32 32 H 1.09001 * 108.83952 * 182.32257 * 17 16 14 33 33 H 1.08994 * 108.84259 * 300.67722 * 17 16 14 34 34 H 1.09008 * 109.69588 * 38.29822 * 18 17 16 35 35 H 1.09000 * 109.69917 * 158.88830 * 18 17 16 36 36 H 1.00906 * 111.00031 * 221.34861 * 19 18 17 37 37 H 1.09002 * 108.71008 * 79.13517 * 20 19 18 38 38 H 1.08997 * 108.71414 * 197.26910 * 20 19 18 39 39 H 1.08999 * 108.78400 * 332.45413 * 21 14 3 40 40 H 1.09003 * 108.78995 * 90.66697 * 21 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6039 1.9821 -0.8408 5 6 3.5646 1.4445 -0.1283 6 6 3.9557 0.9035 -1.4792 7 1 3.1932 0.5899 -2.1768 8 6 5.2872 0.8087 -1.8247 9 7 5.6285 0.3369 -3.0039 10 14 6.6061 1.3504 -0.6179 11 1 7.0013 0.1993 0.2330 12 1 7.7905 1.8419 -1.3668 13 1 6.0751 2.4404 0.2394 14 6 1.6372 2.1258 1.3083 15 1 0.5607 2.0340 1.4520 16 6 2.0266 3.6201 1.2531 17 6 1.3286 4.3967 2.2720 18 6 1.6651 3.9370 3.7025 19 7 0.8571 2.7815 4.0093 20 6 1.5447 1.4947 3.7649 21 6 2.3592 1.4772 2.4591 22 1 -0.3634 0.6035 -0.8318 23 1 -0.3634 -1.0222 -0.1068 24 1 -0.3634 0.4185 0.9386 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.9367 2.4637 -0.0233 28 1 3.9957 0.8181 0.6527 29 1 6.5652 0.2706 -3.2472 30 1 3.1013 3.7137 1.4089 31 1 1.7740 4.0172 0.2699 32 1 1.6044 5.4458 2.1653 33 1 0.2545 4.2993 2.1144 34 1 2.7211 3.6739 3.7650 35 1 1.4433 4.7381 4.4076 36 1 0.5023 2.8285 4.9528 37 1 2.2170 1.2936 4.5991 38 1 0.7979 0.7021 3.7198 39 1 2.5797 0.4424 2.1967 40 1 3.2996 2.0029 2.6247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:32 Heat of formation + Delta-G solvation = -49.282367 kcal Electronic energy + Delta-G solvation = -16787.441447 eV Core-core repulsion = 14406.879770 eV Total energy + Delta-G solvation = -2380.561677 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49047 -37.29603 -34.68941 -33.92682 -32.37803 -31.28567 -27.64208 -26.31802 -24.95970 -23.51084 -22.04609 -21.05435 -19.28995 -19.00164 -17.46805 -16.56615 -16.17583 -15.75039 -15.25929 -14.97362 -14.87011 -14.53940 -14.27713 -14.07016 -13.58630 -13.51372 -13.12005 -12.79096 -12.65518 -12.43072 -12.03248 -11.97682 -11.71167 -11.62891 -11.59325 -11.48596 -11.41713 -10.91730 -10.76471 -10.69570 -10.57253 -9.15205 -8.26478 -6.27169 1.31720 1.33778 1.45575 2.35838 3.08941 3.36922 3.82123 4.00234 4.04380 4.18653 4.34571 4.38357 4.44050 4.46568 4.57780 4.69260 4.77960 4.84132 4.90132 4.97810 5.01367 5.11394 5.12900 5.24251 5.26220 5.32866 5.33795 5.40938 5.42857 5.48610 5.56728 5.62842 5.78240 5.81100 5.86049 6.29519 6.37103 6.71257 6.80801 7.35875 8.90643 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026954 B = 0.008851 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.572237 B = 3162.793607 C = 3662.639032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.066 4.066 4 H 0.041 0.959 5 C 0.001 3.999 6 C -0.516 4.516 7 H 0.032 0.968 8 C 0.002 3.998 9 N -0.955 5.955 10 Si 0.943 3.057 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.250 1.250 14 C -0.059 4.059 15 H 0.083 0.917 16 C -0.112 4.112 17 C -0.109 4.109 18 C 0.069 3.931 19 N -0.701 5.701 20 C 0.073 3.927 21 C -0.117 4.117 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.012 0.988 28 H 0.014 0.986 29 H 0.263 0.737 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.354 0.646 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 5.576 16.620 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.085 4.085 4 H 0.059 0.941 5 C -0.037 4.037 6 C -0.555 4.555 7 H 0.050 0.950 8 C -0.194 4.194 9 N -0.596 5.596 10 Si 0.767 3.233 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.174 1.174 14 C -0.077 4.077 15 H 0.102 0.898 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.061 4.061 19 N -0.334 5.334 20 C -0.056 4.056 21 C -0.155 4.155 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.173 0.827 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.592 5.540 15.920 19.394 hybrid contribution 1.717 -0.088 0.221 1.733 sum -7.875 5.452 16.141 18.768 Atomic orbital electron populations 1.21747 0.94774 1.01388 1.01845 1.21476 0.96171 0.96505 1.00746 1.21082 0.95247 0.95653 0.96492 0.94060 1.19553 0.94498 0.95482 0.94133 1.21556 0.92147 1.40685 1.01064 0.94953 1.25963 1.01357 0.95186 0.96894 1.70079 1.17869 1.48882 1.22813 0.85755 0.78305 0.79815 0.79389 1.19267 1.21171 1.17350 1.20806 1.00411 0.93661 0.92854 0.89848 1.20619 0.99455 0.95792 0.99096 1.20479 1.01067 0.98595 0.94565 1.21580 0.95130 0.92731 0.96685 1.58977 1.41366 1.01377 1.31684 1.22143 0.96469 0.91625 0.95356 1.21515 0.98121 1.01209 0.94659 0.93712 0.92481 0.91346 0.92034 0.94716 0.96984 0.96802 0.92786 0.94196 0.93505 0.91837 0.91477 0.95313 0.89884 0.82651 0.94861 0.90562 0.91620 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.53 71.98 0.69 -3.46 16 2 C -0.11 -4.16 5.17 30.59 0.16 -4.00 16 3 C -0.07 -2.62 1.51 -10.79 -0.02 -2.63 16 4 H 0.04 1.77 8.05 -2.38 -0.02 1.75 16 5 C 0.00 0.03 2.93 29.85 0.09 0.12 16 6 C -0.52 -30.36 8.89 25.60 0.23 -30.13 16 7 H 0.03 2.10 7.39 -2.91 -0.02 2.08 16 8 C 0.00 0.11 5.47 84.65 0.46 0.57 16 9 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 10 Si 0.94 45.73 27.47 68.60 1.88 47.61 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 13 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 14 C -0.06 -1.85 1.55 -11.07 -0.02 -1.87 16 15 H 0.08 2.48 6.10 -2.39 -0.01 2.46 16 16 C -0.11 -3.42 4.07 28.93 0.12 -3.31 16 17 C -0.11 -2.59 5.37 28.74 0.15 -2.44 16 18 C 0.07 1.42 6.15 87.12 0.54 1.95 16 19 N -0.70 -13.94 6.18 -513.94 -3.17 -17.11 16 20 C 0.07 1.61 6.44 86.41 0.56 2.17 16 21 C -0.12 -3.42 3.55 30.11 0.11 -3.31 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.07 1.77 6.74 -2.39 -0.02 1.76 16 25 H 0.06 2.15 6.18 -2.39 -0.01 2.14 16 26 H 0.03 1.54 6.88 -2.39 -0.02 1.52 16 27 H 0.01 0.58 5.79 -2.38 -0.01 0.56 16 28 H 0.01 0.64 6.39 -2.39 -0.02 0.63 16 29 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 30 H 0.04 1.33 6.77 -2.39 -0.02 1.31 16 31 H 0.05 1.52 7.95 -2.39 -0.02 1.50 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 34 H 0.03 0.67 6.79 -2.38 -0.02 0.65 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.35 5.26 8.89 -89.69 -0.80 4.46 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 2.05 5.25 -2.39 -0.01 2.03 16 40 H 0.04 1.31 6.66 -2.39 -0.02 1.29 16 Total: -1.00 -66.03 290.06 2.22 -63.81 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.15 Total: 13.17 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 3.06 Total: -46.35 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -2.88 Total: -78.24 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -66.03 2.22 -63.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.526 kcal (2) G-P(sol) polarization free energy of solvation -66.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds