Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47576 * 2 1 4 4 C 1.53008 * 109.47297 * 119.99706 * 2 1 3 5 5 H 1.08998 * 109.47242 * 300.00451 * 4 2 1 6 6 C 1.52995 * 109.47427 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47144 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.47347 * 60.00206 * 7 6 4 9 9 C 1.52994 * 109.47140 * 300.00441 * 8 7 6 10 10 C 1.50707 * 109.47152 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99954 * 243.02078 * 10 9 8 12 12 C 1.37880 * 120.00064 * 63.01832 * 10 9 8 13 13 N 1.31512 * 119.99741 * 353.22828 * 12 10 9 14 14 Si 1.86797 * 119.99690 * 173.22284 * 12 10 9 15 15 H 1.48500 * 109.47344 * 60.00395 * 14 12 10 16 16 H 1.48506 * 109.46909 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47175 * 299.99777 * 14 12 10 18 18 C 1.53006 * 109.47049 * 299.99512 * 9 8 7 19 19 N 1.46895 * 109.47251 * 184.44317 * 18 9 8 20 20 C 1.52997 * 109.47361 * 59.99568 * 9 8 7 21 21 H 1.09004 * 109.47211 * 60.00229 * 1 2 3 22 22 H 1.09004 * 109.46977 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47342 * 299.99905 * 1 2 3 24 24 H 1.09004 * 109.47306 * 239.99669 * 2 1 3 25 25 H 1.09004 * 109.46664 * 300.00106 * 3 2 1 26 26 H 1.09004 * 109.47073 * 59.99526 * 3 2 1 27 27 H 1.08997 * 109.47504 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47578 * 300.00613 * 6 4 2 29 29 H 1.09004 * 109.46612 * 60.00269 * 6 4 2 30 30 H 1.09001 * 109.47068 * 299.99892 * 7 6 4 31 31 H 1.09007 * 109.47106 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47258 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.46967 * 60.00226 * 8 7 6 34 34 H 0.97001 * 119.99674 * 180.02562 * 13 12 10 35 35 H 1.09005 * 109.46774 * 304.44240 * 18 9 8 36 36 H 1.09000 * 109.46710 * 64.43942 * 18 9 8 37 37 H 1.00902 * 111.00051 * 173.82253 * 19 18 9 38 38 H 1.00900 * 110.99913 * 297.78328 * 19 18 9 39 39 H 1.09007 * 109.47106 * 180.02562 * 20 9 8 40 40 H 1.09001 * 109.47068 * 60.00620 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5699 -0.7218 1.2490 7 6 4.0799 -1.4435 2.4980 8 6 3.5695 -2.8858 2.4977 9 6 2.0395 -2.8853 2.4979 10 6 1.5367 -4.3060 2.4971 11 1 0.9564 -4.6730 1.6633 12 6 1.8175 -5.1374 3.5606 13 7 2.6330 -4.7363 4.5112 14 14 1.0395 -6.8332 3.6511 15 1 1.4400 -7.6258 2.4608 16 1 1.4988 -7.5233 4.8833 17 1 -0.4390 -6.6985 3.6817 18 6 1.5299 -2.1642 3.7475 19 7 0.0648 -2.2560 3.8025 20 6 1.5296 -2.1636 1.2490 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4424 0.0005 28 1 3.9330 -1.2358 0.3591 29 1 3.9336 0.3058 1.2488 30 1 3.7169 -0.9297 3.3882 31 1 5.1700 -1.4435 2.4980 32 1 3.9331 -3.4001 3.3873 33 1 3.9325 -3.3996 1.6075 34 1 2.8308 -5.3213 5.2592 35 1 1.9568 -2.6305 4.6355 36 1 1.8272 -1.1163 3.7088 37 1 -0.2890 -1.8759 4.6677 38 1 -0.3562 -1.7988 3.0077 39 1 0.4395 -2.1628 1.2494 40 1 1.8925 -2.6773 0.3588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260991482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -31.317125 kcal Electronic energy + Delta-G solvation = -17220.910060 eV Core-core repulsion = 14841.127414 eV Total energy + Delta-G solvation = -2379.782646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.97360 -35.35956 -32.73815 -31.82946 -29.45245 -28.48537 -26.94798 -24.54383 -23.30470 -22.21698 -20.60585 -19.34704 -17.61811 -15.97267 -14.97628 -14.65572 -14.33955 -14.08154 -13.59514 -13.15018 -13.02325 -12.75282 -12.38079 -12.02084 -11.98204 -11.68841 -11.44349 -11.12419 -10.81632 -10.67541 -10.59193 -10.43578 -10.27133 -9.93037 -9.86642 -9.76088 -9.59791 -9.09749 -8.64186 -8.49307 -8.06167 -7.18936 -5.75069 -3.77520 3.45667 3.49073 3.54696 4.62695 5.13105 5.26558 5.28929 5.52710 5.63338 5.81504 5.85861 5.88708 5.93333 6.03971 6.07794 6.16352 6.22324 6.39422 6.43685 6.54429 6.56020 6.60903 6.66591 6.67658 6.72477 6.90344 6.93616 7.09621 7.23326 7.27102 7.49874 7.71602 7.89398 8.01727 8.35051 8.48989 8.64639 8.76196 9.16690 9.84456 11.27741 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035311 B = 0.009139 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.773006 B = 3063.184855 C = 3341.715012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.083 4.083 5 H 0.061 0.939 6 C -0.108 4.108 7 C -0.122 4.122 8 C -0.106 4.106 9 C 0.081 3.919 10 C -0.471 4.471 11 H 0.047 0.953 12 C 0.071 3.929 13 N -0.895 5.895 14 Si 0.886 3.114 15 H -0.284 1.284 16 H -0.292 1.292 17 H -0.279 1.279 18 C 0.077 3.923 19 N -0.826 5.826 20 C -0.098 4.098 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.032 0.968 34 H 0.254 0.746 35 H 0.092 0.908 36 H -0.017 1.017 37 H 0.312 0.688 38 H 0.317 0.683 39 H 0.052 0.948 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 9.587 -5.254 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.101 4.101 5 H 0.080 0.920 6 C -0.145 4.145 7 C -0.160 4.160 8 C -0.144 4.144 9 C 0.080 3.920 10 C -0.509 4.509 11 H 0.065 0.935 12 C -0.128 4.128 13 N -0.536 5.536 14 Si 0.715 3.285 15 H -0.210 1.210 16 H -0.219 1.219 17 H -0.205 1.205 18 C -0.053 4.053 19 N -0.353 5.353 20 C -0.136 4.136 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.001 0.999 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.462 8.716 -5.127 10.123 hybrid contribution -0.419 0.131 0.151 0.464 sum -0.881 8.847 -4.976 10.189 Atomic orbital electron populations 1.21872 0.95795 1.02115 1.00593 1.21180 0.95401 0.95462 0.99160 1.21889 1.01045 0.96656 1.00765 1.21284 0.95163 0.97588 0.96087 0.92023 1.21578 0.95557 0.98641 0.98752 1.21683 0.98204 0.99336 0.96782 1.21647 0.98208 0.92216 1.02369 1.18045 0.91101 0.93921 0.88944 1.20803 1.31501 0.95028 1.03596 0.93485 1.24733 0.94763 0.97551 0.95793 1.69757 1.35614 1.36506 1.11708 0.86781 0.80109 0.84908 0.76706 1.20996 1.21854 1.20498 1.21971 0.86115 0.93680 1.03500 1.58603 1.07865 1.64460 1.04368 1.21709 0.99306 0.92560 1.00025 0.93719 0.91890 0.93211 0.91815 0.93609 0.93194 0.92619 0.93001 0.93697 0.92986 0.94304 0.88911 0.94869 0.93542 0.89031 0.99902 0.87834 0.87153 0.92977 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.84 37.15 0.33 -1.65 16 2 C -0.09 -1.34 2.50 -90.62 -0.23 -1.57 16 3 C -0.15 -1.83 8.84 37.16 0.33 -1.50 16 4 C -0.08 -1.41 1.50 -90.62 -0.14 -1.54 16 5 H 0.06 1.10 6.33 -51.93 -0.33 0.77 16 6 C -0.11 -1.83 4.85 -26.74 -0.13 -1.96 16 7 C -0.12 -2.36 5.65 -26.74 -0.15 -2.51 16 8 C -0.11 -2.44 4.53 -26.74 -0.12 -2.56 16 9 C 0.08 1.87 0.32 -155.66 -0.05 1.82 16 10 C -0.47 -12.64 7.48 -34.44 -0.26 -12.89 16 11 H 0.05 1.30 7.75 -52.49 -0.41 0.89 16 12 C 0.07 1.94 5.13 -17.82 -0.09 1.85 16 13 N -0.90 -24.84 9.45 55.43 0.52 -24.32 16 14 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 C 0.08 1.76 4.70 -3.82 -0.02 1.74 16 19 N -0.83 -17.43 9.00 -10.37 -0.09 -17.52 16 20 C -0.10 -1.98 3.35 -26.73 -0.09 -2.07 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.91 6.43 -51.93 -0.33 0.57 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.68 6.43 -51.93 -0.33 0.35 16 30 H 0.05 1.02 6.53 -51.93 -0.34 0.68 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.09 2.39 6.24 -51.93 -0.32 2.06 16 36 H -0.02 -0.36 4.82 -51.93 -0.25 -0.61 16 37 H 0.31 5.88 9.08 -39.29 -0.36 5.53 16 38 H 0.32 6.13 7.46 -39.29 -0.29 5.83 16 39 H 0.05 1.04 5.09 -51.93 -0.26 0.78 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 287.27 15.07 4.33 4.33 Total: -1.00 -27.18 287.27 -7.70 -34.88 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.82 Total: 8.55 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -0.61 Total: -22.84 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.43 Total: -41.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.18 -7.70 -34.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.558 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds