Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47576 * 2 1 4 4 C 1.53008 * 109.47297 * 119.99706 * 2 1 3 5 5 H 1.08998 * 109.47242 * 300.00451 * 4 2 1 6 6 C 1.52995 * 109.47427 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47144 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.47347 * 60.00206 * 7 6 4 9 9 C 1.52994 * 109.47140 * 300.00441 * 8 7 6 10 10 C 1.50707 * 109.47152 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99954 * 243.02078 * 10 9 8 12 12 C 1.37880 * 120.00064 * 63.01832 * 10 9 8 13 13 N 1.31512 * 119.99741 * 353.22828 * 12 10 9 14 14 Si 1.86797 * 119.99690 * 173.22284 * 12 10 9 15 15 H 1.48500 * 109.47344 * 60.00395 * 14 12 10 16 16 H 1.48506 * 109.46909 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47175 * 299.99777 * 14 12 10 18 18 C 1.53006 * 109.47049 * 299.99512 * 9 8 7 19 19 N 1.46895 * 109.47251 * 184.44317 * 18 9 8 20 20 C 1.52997 * 109.47361 * 59.99568 * 9 8 7 21 21 H 1.09004 * 109.47211 * 60.00229 * 1 2 3 22 22 H 1.09004 * 109.46977 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47342 * 299.99905 * 1 2 3 24 24 H 1.09004 * 109.47306 * 239.99669 * 2 1 3 25 25 H 1.09004 * 109.46664 * 300.00106 * 3 2 1 26 26 H 1.09004 * 109.47073 * 59.99526 * 3 2 1 27 27 H 1.08997 * 109.47504 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47578 * 300.00613 * 6 4 2 29 29 H 1.09004 * 109.46612 * 60.00269 * 6 4 2 30 30 H 1.09001 * 109.47068 * 299.99892 * 7 6 4 31 31 H 1.09007 * 109.47106 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47258 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.46967 * 60.00226 * 8 7 6 34 34 H 0.97001 * 119.99674 * 180.02562 * 13 12 10 35 35 H 1.09005 * 109.46774 * 304.44240 * 18 9 8 36 36 H 1.09000 * 109.46710 * 64.43942 * 18 9 8 37 37 H 1.00902 * 111.00051 * 173.82253 * 19 18 9 38 38 H 1.00900 * 110.99913 * 297.78328 * 19 18 9 39 39 H 1.09007 * 109.47106 * 180.02562 * 20 9 8 40 40 H 1.09001 * 109.47068 * 60.00620 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5699 -0.7218 1.2490 7 6 4.0799 -1.4435 2.4980 8 6 3.5695 -2.8858 2.4977 9 6 2.0395 -2.8853 2.4979 10 6 1.5367 -4.3060 2.4971 11 1 0.9564 -4.6730 1.6633 12 6 1.8175 -5.1374 3.5606 13 7 2.6330 -4.7363 4.5112 14 14 1.0395 -6.8332 3.6511 15 1 1.4400 -7.6258 2.4608 16 1 1.4988 -7.5233 4.8833 17 1 -0.4390 -6.6985 3.6817 18 6 1.5299 -2.1642 3.7475 19 7 0.0648 -2.2560 3.8025 20 6 1.5296 -2.1636 1.2490 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4424 0.0005 28 1 3.9330 -1.2358 0.3591 29 1 3.9336 0.3058 1.2488 30 1 3.7169 -0.9297 3.3882 31 1 5.1700 -1.4435 2.4980 32 1 3.9331 -3.4001 3.3873 33 1 3.9325 -3.3996 1.6075 34 1 2.8308 -5.3213 5.2592 35 1 1.9568 -2.6305 4.6355 36 1 1.8272 -1.1163 3.7088 37 1 -0.2890 -1.8759 4.6677 38 1 -0.3562 -1.7988 3.0077 39 1 0.4395 -2.1628 1.2494 40 1 1.8925 -2.6773 0.3588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260991482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -46.988786 kcal Electronic energy + Delta-G solvation = -17221.589634 eV Core-core repulsion = 14841.127414 eV Total energy + Delta-G solvation = -2380.462220 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53592 -36.82395 -34.33585 -33.79058 -31.12270 -29.99724 -28.08750 -26.47221 -25.05792 -23.64987 -22.21149 -20.65473 -19.35287 -17.88432 -16.66344 -16.57542 -15.80475 -15.55106 -15.20647 -14.61739 -14.39317 -14.28643 -13.86309 -13.75075 -13.28804 -13.05104 -12.96059 -12.83444 -12.66282 -12.33325 -12.15965 -11.91234 -11.74456 -11.57962 -11.44016 -11.34807 -11.21830 -10.83630 -10.41897 -10.29207 -10.03003 -8.91103 -7.83109 -5.91044 1.44158 1.46928 1.52465 2.56882 3.42189 3.90181 4.05150 4.11848 4.25244 4.31312 4.53280 4.59595 4.72880 4.79536 4.83051 4.87583 4.95450 4.99137 5.05892 5.09692 5.13873 5.16883 5.20972 5.27954 5.39234 5.42206 5.46037 5.53355 5.65678 5.69189 5.75678 5.83334 5.90436 6.14550 6.43813 6.60124 6.86133 7.06255 7.13988 7.72126 9.15431 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035311 B = 0.009139 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.773006 B = 3063.184855 C = 3341.715012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.075 4.075 5 H 0.057 0.943 6 C -0.104 4.104 7 C -0.116 4.116 8 C -0.102 4.102 9 C 0.072 3.928 10 C -0.483 4.483 11 H 0.032 0.968 12 C 0.031 3.969 13 N -0.908 5.908 14 Si 0.930 3.070 15 H -0.282 1.282 16 H -0.291 1.291 17 H -0.282 1.282 18 C 0.091 3.909 19 N -0.838 5.838 20 C -0.089 4.089 21 H 0.063 0.937 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.250 0.750 35 H 0.056 0.944 36 H 0.000 1.000 37 H 0.326 0.674 38 H 0.329 0.671 39 H 0.050 0.950 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 11.400 -6.211 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.093 4.093 5 H 0.076 0.924 6 C -0.141 4.141 7 C -0.154 4.154 8 C -0.141 4.141 9 C 0.071 3.929 10 C -0.521 4.521 11 H 0.050 0.950 12 C -0.166 4.166 13 N -0.550 5.550 14 Si 0.759 3.241 15 H -0.208 1.208 16 H -0.217 1.217 17 H -0.208 1.208 18 C -0.039 4.039 19 N -0.366 5.366 20 C -0.127 4.127 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.017 0.983 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.069 0.931 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.797 10.533 -6.088 12.192 hybrid contribution -0.329 -0.470 0.442 0.724 sum -1.126 10.063 -5.647 11.594 Atomic orbital electron populations 1.21854 0.95166 1.01481 1.01751 1.21135 0.95952 0.96502 0.97326 1.21848 1.01238 0.95069 1.01795 1.21186 0.95194 0.95428 0.97519 0.92427 1.21559 0.95412 0.99867 0.97252 1.21586 0.99022 0.96740 0.98022 1.21488 0.98220 0.94496 0.99868 1.18100 0.91237 0.92666 0.90853 1.21102 1.31046 0.97092 1.02907 0.95006 1.25258 0.95394 1.00000 0.95973 1.69904 1.36243 1.36977 1.11828 0.86073 0.79100 0.82329 0.76599 1.20760 1.21723 1.20814 1.21665 0.86872 0.93982 1.01412 1.58480 1.07124 1.65295 1.05731 1.21554 0.99113 0.94391 0.97625 0.91791 0.93414 0.92870 0.92029 0.91903 0.92915 0.92277 0.93010 0.90856 0.93308 0.93009 0.92267 0.96422 0.94023 0.92545 0.98261 0.86330 0.85831 0.93132 0.95176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.84 71.98 0.64 -2.89 16 2 C -0.09 -2.33 2.50 -10.79 -0.03 -2.36 16 3 C -0.14 -2.99 8.84 71.98 0.64 -2.35 16 4 C -0.07 -2.38 1.50 -10.79 -0.02 -2.40 16 5 H 0.06 1.90 6.33 -2.39 -0.02 1.89 16 6 C -0.10 -3.25 4.85 30.59 0.15 -3.11 16 7 C -0.12 -4.32 5.65 30.59 0.17 -4.15 16 8 C -0.10 -4.76 4.53 30.59 0.14 -4.62 16 9 C 0.07 3.37 0.32 -52.93 -0.02 3.35 16 10 C -0.48 -26.31 7.48 25.60 0.19 -26.12 16 11 H 0.03 1.78 7.75 -2.91 -0.02 1.76 16 12 C 0.03 1.73 5.13 84.66 0.43 2.16 16 13 N -0.91 -51.51 9.45 21.45 0.20 -51.30 16 14 Si 0.93 45.53 29.54 68.60 2.03 47.55 16 15 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 17 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 18 C 0.09 4.12 4.70 86.31 0.41 4.53 16 19 N -0.84 -34.71 9.00 -186.71 -1.68 -36.39 16 20 C -0.09 -3.53 3.35 30.59 0.10 -3.42 16 21 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.05 1.29 6.43 -2.38 -0.02 1.27 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 1.20 6.43 -2.39 -0.02 1.19 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.94 6.43 -2.38 -0.02 1.92 16 30 H 0.05 1.84 6.53 -2.39 -0.02 1.83 16 31 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 33 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.06 2.98 6.24 -2.38 -0.01 2.96 16 36 H 0.00 -0.01 4.82 -2.39 -0.01 -0.03 16 37 H 0.33 11.94 9.08 -89.69 -0.81 11.13 16 38 H 0.33 12.30 7.46 -89.69 -0.67 11.63 16 39 H 0.05 1.99 5.09 -2.38 -0.01 1.98 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -58.27 287.27 2.90 -55.38 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.46 Total: 26.14 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 2.81 Total: -41.37 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.48 Total: -87.69 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -58.27 2.90 -55.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.390 kcal (2) G-P(sol) polarization free energy of solvation -58.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds