Wall clock time and date at job start Mon Mar 30 2020 02:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.52994 * 109.47183 * 120.00350 * 2 1 3 5 5 H 1.08992 * 109.47236 * 54.55205 * 4 2 1 6 6 C 1.50701 * 109.47223 * 294.55178 * 4 2 1 7 7 H 1.08003 * 120.00164 * 275.26878 * 6 4 2 8 8 C 1.37880 * 120.00318 * 95.25932 * 6 4 2 9 9 N 1.31510 * 119.99460 * 0.75258 * 8 6 4 10 10 Si 1.86794 * 120.00180 * 180.74780 * 8 6 4 11 11 H 1.48494 * 109.47235 * 90.00329 * 10 8 6 12 12 H 1.48496 * 109.47226 * 210.00378 * 10 8 6 13 13 H 1.48502 * 109.47384 * 330.00455 * 10 8 6 14 14 C 1.52999 * 109.47236 * 174.55348 * 4 2 1 15 15 H 1.09002 * 109.50707 * 56.33873 * 14 4 2 16 16 C 1.53123 * 109.50118 * 296.22095 * 14 4 2 17 17 C 1.53123 * 109.15892 * 182.40025 * 16 14 4 18 18 C 1.53039 * 109.27539 * 57.65850 * 17 16 14 19 19 N 1.46849 * 109.52416 * 300.81790 * 18 17 16 20 20 C 1.46895 * 111.00225 * 185.84220 * 19 18 17 21 21 C 1.46846 * 111.19705 * 61.74203 * 19 18 17 22 22 H 1.09002 * 109.46786 * 63.65175 * 1 2 3 23 23 H 1.08992 * 109.47079 * 183.65854 * 1 2 3 24 24 H 1.09003 * 109.46879 * 303.65864 * 1 2 3 25 25 H 1.09000 * 109.46838 * 240.00443 * 2 1 3 26 26 H 1.09002 * 109.47000 * 62.59584 * 3 2 1 27 27 H 1.09006 * 109.47220 * 182.59360 * 3 2 1 28 28 H 1.09004 * 109.47260 * 302.59364 * 3 2 1 29 29 H 0.97001 * 119.99682 * 179.97438 * 9 8 6 30 30 H 1.08993 * 109.52237 * 302.30595 * 16 14 4 31 31 H 1.09001 * 109.51929 * 62.50115 * 16 14 4 32 32 H 1.08996 * 109.50773 * 297.71595 * 17 16 14 33 33 H 1.09003 * 109.53273 * 177.61089 * 17 16 14 34 34 H 1.08997 * 109.46054 * 180.79868 * 18 17 16 35 35 H 1.08998 * 109.46364 * 60.83255 * 18 17 16 36 36 H 1.09009 * 109.47029 * 295.78992 * 20 19 18 37 37 H 1.09002 * 109.47205 * 55.78587 * 20 19 18 38 38 H 1.08999 * 109.47535 * 175.79134 * 20 19 18 39 39 H 1.09008 * 109.45921 * 178.24351 * 21 19 18 40 40 H 1.09000 * 109.45568 * 58.27274 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5993 -1.7169 1.2992 6 6 1.6509 0.0626 2.4760 7 1 2.2719 0.8786 2.8149 8 6 0.5019 -0.2617 3.1657 9 7 -0.2466 -1.2646 2.7614 10 14 0.0085 0.7233 4.6742 11 1 -0.8558 1.8586 4.2631 12 1 -0.7372 -0.1514 5.6144 13 1 1.2264 1.2457 5.3444 14 6 3.5639 -0.8410 1.1826 15 1 4.0021 0.1504 1.0671 16 6 3.9562 -1.7164 -0.0109 17 6 5.4785 -1.8802 -0.0351 18 6 5.9420 -2.4911 1.2894 19 7 5.5434 -1.6163 2.3995 20 6 6.0913 -2.0999 3.6737 21 6 4.0829 -1.4820 2.4716 22 1 -0.3633 0.4561 -0.9209 23 1 -0.3633 -1.0255 0.0656 24 1 -0.3633 0.5696 0.8554 25 1 1.8933 -0.5138 -0.8900 26 1 1.7152 1.9427 0.9124 27 1 3.1291 1.4429 -0.0465 28 1 1.6392 1.9696 -0.8658 29 1 -1.0548 -1.4931 3.2469 30 1 3.4860 -2.6950 0.0851 31 1 3.6262 -1.2417 -0.9349 32 1 5.9473 -0.9055 -0.1701 33 1 5.7613 -2.5372 -0.8575 34 1 7.0268 -2.5959 1.2810 35 1 5.4835 -3.4717 1.4172 36 1 5.6618 -3.0742 3.9074 37 1 7.1745 -2.1904 3.5926 38 1 5.8440 -1.3943 4.4668 39 1 3.8176 -0.8537 3.3221 40 1 3.6333 -2.4674 2.5939 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:53 Heat of formation + Delta-G solvation = -26.640316 kcal Electronic energy + Delta-G solvation = -17003.561317 eV Core-core repulsion = 14623.981472 eV Total energy + Delta-G solvation = -2379.579844 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.70214 -35.94899 -32.68166 -31.77903 -30.50416 -26.35031 -26.23213 -25.88696 -23.66156 -22.10194 -20.97385 -19.16079 -18.16339 -15.98792 -15.28981 -14.63522 -14.39871 -14.01259 -13.68487 -13.54737 -12.91065 -12.58047 -12.42411 -12.15839 -11.81704 -11.69836 -11.28438 -11.12061 -10.93957 -10.80933 -10.67898 -10.51861 -10.27996 -10.08417 -9.82982 -9.79133 -9.53342 -9.09884 -8.67060 -8.49600 -8.29749 -7.78693 -5.93228 -3.92886 3.32595 3.40388 3.43480 4.48186 4.49301 5.33878 5.38445 5.43006 5.53114 5.71539 5.83270 5.89033 6.02802 6.14183 6.16957 6.23763 6.30590 6.38413 6.39230 6.45239 6.59677 6.63459 6.66485 6.74372 6.97056 7.00124 7.14380 7.15643 7.22260 7.41318 7.52692 7.61305 7.70421 7.74688 7.90404 7.93832 8.06486 8.56233 9.14601 9.67813 11.15256 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.010770 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.769811 B = 2599.278851 C = 3356.771584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.133 4.133 4 C 0.046 3.954 5 H 0.054 0.946 6 C -0.495 4.495 7 H 0.052 0.948 8 C 0.066 3.934 9 N -0.889 5.889 10 Si 0.877 3.123 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.275 1.275 14 C -0.071 4.071 15 H 0.062 0.938 16 C -0.119 4.119 17 C -0.115 4.115 18 C 0.058 3.942 19 N -0.549 5.549 20 C 0.028 3.972 21 C 0.076 3.924 22 H 0.010 0.990 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.022 0.978 29 H 0.257 0.743 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.019 0.981 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.258 -1.308 -3.065 8.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 C -0.190 4.190 4 C 0.027 3.973 5 H 0.072 0.928 6 C -0.534 4.534 7 H 0.070 0.930 8 C -0.135 4.135 9 N -0.528 5.528 10 Si 0.706 3.294 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.200 1.200 14 C -0.090 4.090 15 H 0.080 0.920 16 C -0.157 4.157 17 C -0.153 4.153 18 C -0.070 4.070 19 N -0.274 5.274 20 C -0.120 4.120 21 C -0.051 4.051 22 H 0.029 0.971 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.283 -0.950 -3.089 8.891 hybrid contribution -0.729 -0.324 1.078 1.342 sum 7.553 -1.275 -2.011 7.919 Atomic orbital electron populations 1.21542 0.95914 1.01492 0.98380 1.21175 0.95543 0.95184 0.98070 1.21769 0.99125 0.97827 1.00259 1.18926 0.88220 0.97805 0.92382 0.92768 1.20999 1.07043 1.15538 1.09793 0.92959 1.24883 0.96806 0.94940 0.96835 1.69945 1.14895 1.27873 1.40067 0.86831 0.78675 0.80243 0.83678 1.20877 1.21542 1.20019 1.21282 0.99095 0.97308 0.91282 0.91995 1.21752 0.93902 1.00190 0.99832 1.21589 0.97504 1.00723 0.95475 1.22019 0.98993 0.93949 0.92030 1.62029 1.13524 1.48878 1.02920 1.22283 0.99110 0.98290 0.92364 1.22099 0.83188 0.99335 1.00480 0.97133 0.93141 0.91936 0.95118 0.91786 0.94340 0.95866 0.93299 0.93024 0.92233 0.91715 0.92723 0.92059 0.95655 0.96287 0.92402 0.91556 0.89686 0.95796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 8.06 37.16 0.30 -2.32 16 2 C -0.08 -1.75 2.55 -90.62 -0.23 -1.98 16 3 C -0.13 -2.67 8.63 37.16 0.32 -2.35 16 4 C 0.05 1.07 1.30 -91.77 -0.12 0.95 16 5 H 0.05 1.44 7.28 -51.93 -0.38 1.06 16 6 C -0.50 -12.61 4.84 -34.44 -0.17 -12.77 16 7 H 0.05 1.36 7.69 -52.48 -0.40 0.96 16 8 C 0.07 1.75 4.45 -17.82 -0.08 1.67 16 9 N -0.89 -24.45 11.73 55.43 0.65 -23.80 16 10 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C -0.07 -1.44 1.77 -90.54 -0.16 -1.60 16 15 H 0.06 1.31 6.47 -51.93 -0.34 0.98 16 16 C -0.12 -2.12 4.96 -26.60 -0.13 -2.26 16 17 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 18 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 19 N -0.55 -9.58 4.91 -242.96 -1.19 -10.78 16 20 C 0.03 0.42 9.59 60.06 0.58 1.00 16 21 C 0.08 1.53 4.43 -3.83 -0.02 1.52 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 23 H 0.05 1.20 8.04 -51.93 -0.42 0.78 16 24 H 0.06 1.55 6.68 -51.93 -0.35 1.20 16 25 H 0.03 0.63 6.34 -51.93 -0.33 0.30 16 26 H 0.06 1.39 6.88 -51.93 -0.36 1.03 16 27 H 0.04 0.73 6.63 -51.93 -0.34 0.38 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.04 6.54 -51.93 -0.34 0.70 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.28 8.14 -51.92 -0.42 -0.14 16 37 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.88 7.13 -51.92 -0.37 1.51 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -26.21 297.07 -8.38 -34.59 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.40 Total: -1.16 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 0.11 Total: -19.18 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.54 Total: -34.58 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.21 -8.38 -34.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.951 kcal (2) G-P(sol) polarization free energy of solvation -26.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds