Wall clock time and date at job start Mon Mar 30 2020 02:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 C 1.52995 * 109.46967 * 120.00254 * 2 1 3 5 5 H 1.09002 * 110.43812 * 297.45689 * 4 2 1 6 6 C 1.54893 * 110.59786 * 174.84173 * 4 2 1 7 7 C 1.54967 * 102.77386 * 203.34944 * 6 4 2 8 8 C 1.54264 * 104.16194 * 37.88957 * 7 6 4 9 9 H 1.08999 * 110.03401 * 95.75532 * 8 7 6 10 10 N 1.46906 * 110.03047 * 217.13547 * 8 7 6 11 11 C 1.46901 * 110.99793 * 272.90475 * 10 8 7 12 12 C 1.53000 * 109.46769 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99751 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47171 * 89.99544 * 17 15 13 19 19 H 1.48500 * 109.46632 * 209.99795 * 17 15 13 20 20 H 1.48494 * 109.47053 * 329.99231 * 17 15 13 21 21 C 1.53879 * 106.63943 * 336.44076 * 8 7 6 22 22 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47215 * 299.99937 * 1 2 3 24 24 H 1.09005 * 109.46573 * 59.99784 * 1 2 3 25 25 H 1.09002 * 109.47215 * 240.00063 * 2 1 3 26 26 H 1.09006 * 109.47114 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47594 * 300.00312 * 3 2 1 28 28 H 1.09002 * 109.47061 * 59.99968 * 3 2 1 29 29 H 1.08994 * 110.75576 * 321.63676 * 6 4 2 30 30 H 1.08996 * 110.75518 * 84.82317 * 6 4 2 31 31 H 1.09000 * 110.47538 * 279.23334 * 7 6 4 32 32 H 1.09005 * 110.52946 * 156.57009 * 7 6 4 33 33 H 1.00899 * 110.99995 * 36.86077 * 10 8 7 34 34 H 1.09001 * 109.46874 * 60.00179 * 11 10 8 35 35 H 1.08992 * 109.47407 * 300.00197 * 11 10 8 36 36 H 1.09002 * 109.47398 * 300.00295 * 12 11 10 37 37 H 1.09001 * 109.47194 * 60.00475 * 12 11 10 38 38 H 0.97000 * 120.00333 * 179.97438 * 16 15 13 39 39 H 1.09005 * 110.02873 * 119.26277 * 21 8 7 40 40 H 1.08997 * 110.03225 * 240.64596 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7228 -0.1943 2.1491 6 6 3.5831 -0.8504 1.2121 7 6 3.8482 -2.0599 2.1439 8 6 2.6879 -3.0306 1.8418 9 1 3.0029 -3.7719 1.1074 10 7 2.2559 -3.6984 3.0769 11 6 3.0504 -4.9085 3.3266 12 6 2.5728 -5.5745 4.6186 13 6 3.3882 -6.8156 4.8751 14 1 4.1692 -7.1006 4.1858 15 6 3.1371 -7.5873 5.9898 16 7 2.1864 -7.2399 6.8295 17 14 4.1483 -9.1253 6.3081 18 1 5.3383 -8.7752 7.1245 19 1 3.3213 -10.1188 7.0390 20 1 4.5890 -9.7046 5.0138 21 6 1.5387 -2.1800 1.2728 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.9289 -1.0602 0.2000 30 1 4.0556 0.0515 1.6010 31 1 3.8235 -1.7492 3.1884 32 1 4.8054 -2.5236 1.9054 33 1 2.3004 -3.0679 3.8634 34 1 4.1020 -4.6390 3.4244 35 1 2.9288 -5.6012 2.4939 36 1 2.6947 -4.8816 5.4512 37 1 1.5211 -5.8440 4.5212 38 1 2.0095 -7.7830 7.6135 39 1 1.2965 -2.5081 0.2619 40 1 0.6602 -2.2634 1.9127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308551501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:26 Heat of formation + Delta-G solvation = -42.650249 kcal Electronic energy + Delta-G solvation = -15599.798905 eV Core-core repulsion = 13219.524818 eV Total energy + Delta-G solvation = -2380.274087 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.08605 -35.88740 -33.67992 -32.26268 -29.39049 -28.52153 -26.99102 -26.03574 -23.61542 -21.53097 -20.62097 -20.14535 -19.23090 -16.33125 -15.71823 -15.37976 -14.61293 -14.40482 -14.26359 -13.50727 -13.33899 -13.09970 -12.79016 -12.47051 -12.27982 -12.14605 -11.74789 -11.55404 -11.09532 -11.01658 -10.98193 -10.88909 -10.60673 -10.51349 -10.41224 -10.32614 -10.24871 -9.95285 -9.29689 -9.10332 -8.32833 -7.68764 -5.97262 -3.99696 3.33477 3.39513 3.43128 4.45329 4.56699 4.63224 4.71174 4.92142 5.00887 5.16540 5.34347 5.38553 5.50616 5.54093 5.59460 5.61945 5.69592 5.76743 5.79967 5.82960 5.90269 6.01267 6.02984 6.13859 6.18510 6.22170 6.38182 6.40904 6.44927 6.52962 6.57746 7.03246 7.58334 7.78349 7.88418 8.03797 8.13383 8.47274 9.07738 9.63891 11.14211 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.066189 B = 0.004192 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.927705 B = 6678.482390 C = 6874.040788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.088 4.088 5 H 0.072 0.928 6 C -0.115 4.115 7 C -0.153 4.153 8 C 0.082 3.918 9 H 0.072 0.928 10 N -0.686 5.686 11 C 0.066 3.934 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.109 4.109 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.336 0.664 34 H 0.014 0.986 35 H 0.056 0.944 36 H 0.013 0.987 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.123 15.330 -12.835 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.153 4.153 7 C -0.193 4.193 8 C -0.029 4.029 9 H 0.091 0.909 10 N -0.316 5.316 11 C -0.062 4.062 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.147 4.147 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.738 14.903 -12.972 19.771 hybrid contribution 1.446 -0.505 0.589 1.641 sum 0.708 14.398 -12.383 19.004 Atomic orbital electron populations 1.21866 0.95356 1.02072 1.01282 1.21152 0.95668 0.95848 0.98021 1.21853 1.01008 0.96219 1.01354 1.22070 0.95002 0.96125 0.97503 0.90996 1.22495 0.95649 0.97684 0.99475 1.23147 0.99615 0.96785 0.99719 1.22212 0.92491 0.94609 0.93578 0.90920 1.60743 1.57518 1.08976 1.04329 1.22158 0.93373 0.89928 1.00778 1.19074 0.97262 0.94658 0.90304 1.21191 1.17973 1.08847 1.07955 0.92807 1.25007 0.95334 0.97903 0.96157 1.69975 1.31105 1.39037 1.13186 0.86590 0.80062 0.83024 0.78294 1.20723 1.21194 1.19889 1.22261 0.98789 0.93013 1.00664 0.92229 0.92800 0.93214 0.91414 0.92700 0.93131 0.92852 0.91770 0.92132 0.91589 0.92040 0.84633 0.96773 0.92555 0.96895 0.95702 0.93019 0.92058 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.96 37.16 0.33 -1.00 16 2 C -0.09 -0.82 2.31 -90.62 -0.21 -1.03 16 3 C -0.15 -1.21 9.03 37.16 0.34 -0.88 16 4 C -0.09 -0.95 2.42 -88.96 -0.22 -1.16 16 5 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.12 -1.24 5.46 -24.69 -0.13 -1.38 16 7 C -0.15 -2.02 6.43 -25.03 -0.16 -2.18 16 8 C 0.08 1.22 3.23 -66.59 -0.21 1.00 16 9 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 10 N -0.69 -12.53 6.17 -105.54 -0.65 -13.18 16 11 C 0.07 1.43 5.45 -3.82 -0.02 1.40 16 12 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 13 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.11 -1.39 5.11 -25.61 -0.13 -1.52 16 22 H 0.06 0.56 7.09 -51.93 -0.37 0.20 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 26 H 0.05 0.44 7.34 -51.93 -0.38 0.06 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 30 H 0.06 0.61 8.00 -51.93 -0.42 0.19 16 31 H 0.07 0.90 7.57 -51.93 -0.39 0.51 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.34 5.99 8.12 -39.29 -0.32 5.67 16 34 H 0.01 0.30 8.12 -51.93 -0.42 -0.12 16 35 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.06 0.74 7.56 -51.93 -0.39 0.35 16 40 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -29.69 313.47 -8.88 -38.57 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.69 Total: -0.40 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -0.98 Total: -20.05 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.09 Total: -39.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.69 -8.88 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308551501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.080 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds