Wall clock time and date at job start Mon Mar 30 2020 02:46:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53000 * 109.47023 * 2 1
4 4 C 1.52998 * 109.47091 * 179.97438 * 3 2 1
5 5 H 1.09000 * 109.47792 * 304.99965 * 4 3 2
6 6 C 1.53007 * 109.46966 * 64.99722 * 4 3 2
7 7 C 1.52995 * 109.47377 * 184.99695 * 4 3 2
8 8 N 1.46905 * 109.47626 * 175.00233 * 7 4 3
9 9 C 1.46895 * 111.00231 * 180.02562 * 8 7 4
10 10 C 1.52991 * 109.47341 * 174.70765 * 9 8 7
11 11 C 1.50700 * 115.54942 * 294.92212 * 10 9 8
12 12 H 1.08001 * 120.00223 * 95.23839 * 11 10 9
13 13 C 1.37882 * 119.99985 * 275.51843 * 11 10 9
14 14 N 1.31510 * 119.99845 * 6.82691 * 13 11 10
15 15 Si 1.86801 * 119.99960 * 186.81902 * 13 11 10
16 16 H 1.48511 * 109.46764 * 60.00434 * 15 13 11
17 17 H 1.48498 * 109.47009 * 180.02562 * 15 13 11
18 18 H 1.48494 * 109.47576 * 300.00399 * 15 13 11
19 19 C 1.53002 * 117.50211 * 80.58746 * 10 9 8
20 20 C 1.52997 * 117.50254 * 149.25057 * 10 9 8
21 21 H 1.09002 * 109.46719 * 180.02562 * 1 2 3
22 22 H 1.08995 * 109.47257 * 300.00166 * 1 2 3
23 23 H 1.09000 * 109.46670 * 60.00437 * 1 2 3
24 24 H 1.08998 * 109.47207 * 239.99300 * 2 1 3
25 25 H 1.09007 * 109.46999 * 119.99340 * 2 1 3
26 26 H 1.08995 * 109.47240 * 59.99824 * 3 2 1
27 27 H 1.09000 * 109.47041 * 299.99336 * 3 2 1
28 28 H 1.09000 * 109.46693 * 179.97438 * 6 4 3
29 29 H 1.08995 * 109.47053 * 299.99933 * 6 4 3
30 30 H 1.08997 * 109.47103 * 60.00168 * 6 4 3
31 31 H 1.09005 * 109.47175 * 54.99583 * 7 4 3
32 32 H 1.08997 * 109.47201 * 295.00489 * 7 4 3
33 33 H 1.00896 * 110.99695 * 56.04222 * 8 7 4
34 34 H 1.09005 * 109.47411 * 54.70385 * 9 8 7
35 35 H 1.09008 * 109.46921 * 294.70828 * 9 8 7
36 36 H 0.96998 * 120.00085 * 180.02562 * 14 13 11
37 37 H 1.09002 * 117.50366 * 215.00501 * 19 10 9
38 38 H 1.08998 * 117.49551 * 0.02714 * 19 10 9
39 39 H 1.09004 * 117.49784 * 359.97438 * 20 10 9
40 40 H 1.09002 * 117.49862 * 144.97628 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 1 3.9331 0.8532 0.8427
6 6 4.0805 0.8326 -1.3064
7 6 4.0800 2.8795 0.1263
8 7 5.5440 2.8708 0.2473
9 6 6.0702 4.2368 0.3707
10 6 7.5776 4.1815 0.6263
11 6 7.9928 3.5556 1.9328
12 1 8.2629 2.5105 1.9692
13 6 8.0223 4.3157 3.0828
14 7 7.5617 5.5474 3.0688
15 14 8.7163 3.5958 4.6606
16 1 10.1351 3.2123 4.4476
17 1 8.6339 4.6075 5.7445
18 1 7.9313 2.3951 5.0442
19 6 8.4916 3.9669 -0.5818
20 6 8.4270 5.3381 0.0956
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 1.8934 -0.5139 -0.8899
25 1 1.8934 -0.5138 0.8901
26 1 1.6767 1.9563 0.8899
27 1 1.6768 1.9563 -0.8900
28 1 5.1705 0.8331 -1.3061
29 1 3.7173 -0.1911 -1.3959
30 1 3.7176 1.4219 -2.1485
31 1 3.6449 3.3434 1.0116
32 1 3.7919 3.4460 -0.7592
33 1 5.9682 2.3885 -0.5308
34 1 5.5789 4.7416 1.2026
35 1 5.8779 4.7849 -0.5516
36 1 7.5828 6.0823 3.8777
37 1 9.3932 3.3730 -0.4316
38 1 8.0190 3.8655 -1.5587
39 1 7.9119 6.1382 -0.4360
40 1 9.2859 5.6465 0.6917
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308621937.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:06
Heat of formation + Delta-G solvation = -6.045840 kcal
Electronic energy + Delta-G solvation = -15776.715484 eV
Core-core repulsion = 13398.028683 eV
Total energy + Delta-G solvation = -2378.686801 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-37.69793 -36.51262 -34.02205 -31.80252 -31.26986 -26.68995 -26.32812 -25.18204
-23.21266 -21.26818 -20.85813 -19.74250 -18.83934 -16.18439 -15.52197 -15.02972
-14.45430 -14.41865 -13.86150 -13.61797 -13.23823 -13.19037 -12.69868 -12.37254
-12.05970 -11.79919 -11.46609 -11.28370 -11.19784 -10.86815 -10.77439 -10.66528
-10.46567 -10.36364 -10.33146 -10.20881 -10.08510 -9.33783 -8.72778 -8.30636
-7.99462 -7.42278 -5.89547 -3.90417 3.40315 3.43869 3.47516 4.52804
4.68682 4.94208 5.06329 5.16131 5.26317 5.39263 5.41150 5.51167
5.54354 5.68691 5.78150 5.84850 5.95136 5.96004 6.06204 6.14519
6.19765 6.24377 6.28898 6.32436 6.41563 6.54581 6.58241 6.65912
6.74706 6.79355 6.97919 7.17171 7.52430 7.66830 8.03432 8.07169
8.28458 8.63252 9.08021 9.72129 11.20597
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.027253 B = 0.006044 C = 0.005369
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1027.154371 B = 4631.554502 C = 5213.708348
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.125 4.125
3 C -0.113 4.113
4 C -0.091 4.091
5 H 0.080 0.920
6 C -0.148 4.148
7 C 0.065 3.935
8 N -0.670 5.670
9 C 0.107 3.893
10 C 0.054 3.946
11 C -0.469 4.469
12 H 0.058 0.942
13 C 0.067 3.933
14 N -0.887 5.887
15 Si 0.888 3.112
16 H -0.279 1.279
17 H -0.290 1.290
18 H -0.277 1.277
19 C -0.216 4.216
20 C -0.160 4.160
21 H 0.050 0.950
22 H 0.052 0.948
23 H 0.051 0.949
24 H 0.062 0.938
25 H 0.061 0.939
26 H 0.061 0.939
27 H 0.057 0.943
28 H 0.059 0.941
29 H 0.052 0.948
30 H 0.046 0.954
31 H 0.066 0.934
32 H 0.014 0.986
33 H 0.328 0.672
34 H 0.076 0.924
35 H -0.009 1.009
36 H 0.257 0.743
37 H 0.076 0.924
38 H 0.059 0.941
39 H 0.059 0.941
40 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.897 -7.190 -7.018 14.103
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.163 4.163
3 C -0.151 4.151
4 C -0.110 4.110
5 H 0.098 0.902
6 C -0.206 4.206
7 C -0.064 4.064
8 N -0.300 5.300
9 C -0.021 4.021
10 C 0.053 3.947
11 C -0.507 4.507
12 H 0.077 0.923
13 C -0.134 4.134
14 N -0.525 5.525
15 Si 0.716 3.284
16 H -0.205 1.205
17 H -0.216 1.216
18 H -0.203 1.203
19 C -0.253 4.253
20 C -0.199 4.199
21 H 0.069 0.931
22 H 0.072 0.928
23 H 0.070 0.930
24 H 0.080 0.920
25 H 0.080 0.920
26 H 0.080 0.920
27 H 0.076 0.924
28 H 0.078 0.922
29 H 0.071 0.929
30 H 0.066 0.934
31 H 0.085 0.915
32 H 0.032 0.968
33 H 0.146 0.854
34 H 0.094 0.906
35 H 0.010 0.990
36 H 0.067 0.933
37 H 0.095 0.905
38 H 0.077 0.923
39 H 0.078 0.922
40 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -9.938 -7.122 -6.206 13.711
hybrid contribution 0.252 0.156 -0.032 0.298
sum -9.686 -6.966 -6.238 13.463
Atomic orbital electron populations
1.21784 0.96351 1.01192 1.01634 1.21575 0.95295 0.97344 1.02060
1.21623 0.95369 0.96401 1.01749 1.21170 0.94159 0.97006 0.98642
0.90201 1.21886 1.01456 1.00195 0.97015 1.21949 0.90178 0.95046
0.99256 1.60285 1.02724 1.18673 1.48326 1.21531 0.96827 0.86787
0.97004 1.18826 0.87379 0.96816 0.91692 1.20269 1.44054 0.95725
0.90614 0.92347 1.24931 0.95199 0.94938 0.98381 1.69999 1.45637
1.08752 1.28077 0.86732 0.79638 0.78768 0.83232 1.20472 1.21567
1.20289 1.22981 1.03926 1.01693 0.96736 1.22527 1.04006 0.90130
1.03202 0.93108 0.92845 0.92991 0.91957 0.92024 0.92016 0.92426
0.92216 0.92857 0.93441 0.91544 0.96830 0.85399 0.90589 0.99049
0.93325 0.90547 0.92276 0.92210 0.90122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16
2 C -0.13 -1.28 5.69 -26.73 -0.15 -1.43 16
3 C -0.11 -1.32 4.68 -26.73 -0.13 -1.45 16
4 C -0.09 -1.26 2.60 -90.62 -0.24 -1.49 16
5 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
6 C -0.15 -1.85 8.72 37.16 0.32 -1.52 16
7 C 0.07 1.10 5.13 -3.82 -0.02 1.08 16
8 N -0.67 -13.46 6.38 -113.78 -0.73 -14.19 16
9 C 0.11 2.47 5.51 -3.83 -0.02 2.45 16
10 C 0.05 1.34 1.53 -155.66 -0.24 1.10 16
11 C -0.47 -13.00 8.73 -34.44 -0.30 -13.30 16
12 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16
13 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16
14 N -0.89 -25.60 12.97 55.43 0.72 -24.88 16
15 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16
16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16
18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
19 C -0.22 -4.79 9.96 -26.69 -0.27 -5.06 16
20 C -0.16 -3.86 9.48 -26.69 -0.25 -4.11 16
21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
24 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16
25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.06 0.80 6.68 -51.93 -0.35 0.45 16
29 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16
30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16
33 H 0.33 6.18 7.04 -39.29 -0.28 5.91 16
34 H 0.08 1.96 8.13 -51.93 -0.42 1.53 16
35 H -0.01 -0.19 8.09 -51.92 -0.42 -0.61 16
36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16
37 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16
38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16
40 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16
LS Contribution 320.74 15.07 4.83 4.83
Total: -1.00 -28.27 320.74 -8.82 -37.10
By element:
Atomic # 1 Polarization: 11.01 SS G_CDS: -7.61 Total: 3.40 kcal
Atomic # 6 Polarization: -21.95 SS G_CDS: -1.01 Total: -22.96 kcal
Atomic # 7 Polarization: -39.06 SS G_CDS: -0.01 Total: -39.07 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -28.27 -8.82 -37.10 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308621937.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.050 kcal
(2) G-P(sol) polarization free energy of solvation -28.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.046 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds