Wall clock time and date at job start Mon Mar 30 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47792 * 304.99965 * 4 3 2 6 6 C 1.53007 * 109.46966 * 64.99722 * 4 3 2 7 7 C 1.52995 * 109.47377 * 184.99695 * 4 3 2 8 8 N 1.46905 * 109.47626 * 175.00233 * 7 4 3 9 9 C 1.46895 * 111.00231 * 180.02562 * 8 7 4 10 10 C 1.52991 * 109.47341 * 174.70765 * 9 8 7 11 11 C 1.50700 * 115.54942 * 294.92212 * 10 9 8 12 12 H 1.08001 * 120.00223 * 95.23839 * 11 10 9 13 13 C 1.37882 * 119.99985 * 275.51843 * 11 10 9 14 14 N 1.31510 * 119.99845 * 6.82691 * 13 11 10 15 15 Si 1.86801 * 119.99960 * 186.81902 * 13 11 10 16 16 H 1.48511 * 109.46764 * 60.00434 * 15 13 11 17 17 H 1.48498 * 109.47009 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47576 * 300.00399 * 15 13 11 19 19 C 1.53002 * 117.50211 * 80.58746 * 10 9 8 20 20 C 1.52997 * 117.50254 * 149.25057 * 10 9 8 21 21 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47257 * 300.00166 * 1 2 3 23 23 H 1.09000 * 109.46670 * 60.00437 * 1 2 3 24 24 H 1.08998 * 109.47207 * 239.99300 * 2 1 3 25 25 H 1.09007 * 109.46999 * 119.99340 * 2 1 3 26 26 H 1.08995 * 109.47240 * 59.99824 * 3 2 1 27 27 H 1.09000 * 109.47041 * 299.99336 * 3 2 1 28 28 H 1.09000 * 109.46693 * 179.97438 * 6 4 3 29 29 H 1.08995 * 109.47053 * 299.99933 * 6 4 3 30 30 H 1.08997 * 109.47103 * 60.00168 * 6 4 3 31 31 H 1.09005 * 109.47175 * 54.99583 * 7 4 3 32 32 H 1.08997 * 109.47201 * 295.00489 * 7 4 3 33 33 H 1.00896 * 110.99695 * 56.04222 * 8 7 4 34 34 H 1.09005 * 109.47411 * 54.70385 * 9 8 7 35 35 H 1.09008 * 109.46921 * 294.70828 * 9 8 7 36 36 H 0.96998 * 120.00085 * 180.02562 * 14 13 11 37 37 H 1.09002 * 117.50366 * 215.00501 * 19 10 9 38 38 H 1.08998 * 117.49551 * 0.02714 * 19 10 9 39 39 H 1.09004 * 117.49784 * 359.97438 * 20 10 9 40 40 H 1.09002 * 117.49862 * 144.97628 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0800 2.8795 0.1263 8 7 5.5440 2.8708 0.2473 9 6 6.0702 4.2368 0.3707 10 6 7.5776 4.1815 0.6263 11 6 7.9928 3.5556 1.9328 12 1 8.2629 2.5105 1.9692 13 6 8.0223 4.3157 3.0828 14 7 7.5617 5.5474 3.0688 15 14 8.7163 3.5958 4.6606 16 1 10.1351 3.2123 4.4476 17 1 8.6339 4.6075 5.7445 18 1 7.9313 2.3951 5.0442 19 6 8.4916 3.9669 -0.5818 20 6 8.4270 5.3381 0.0956 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6768 1.9563 -0.8900 28 1 5.1705 0.8331 -1.3061 29 1 3.7173 -0.1911 -1.3959 30 1 3.7176 1.4219 -2.1485 31 1 3.6449 3.3434 1.0116 32 1 3.7919 3.4460 -0.7592 33 1 5.9682 2.3885 -0.5308 34 1 5.5789 4.7416 1.2026 35 1 5.8779 4.7849 -0.5516 36 1 7.5828 6.0823 3.8777 37 1 9.3932 3.3730 -0.4316 38 1 8.0190 3.8655 -1.5587 39 1 7.9119 6.1382 -0.4360 40 1 9.2859 5.6465 0.6917 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308621937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:06 Heat of formation + Delta-G solvation = -6.045840 kcal Electronic energy + Delta-G solvation = -15776.715484 eV Core-core repulsion = 13398.028683 eV Total energy + Delta-G solvation = -2378.686801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.69793 -36.51262 -34.02205 -31.80252 -31.26986 -26.68995 -26.32812 -25.18204 -23.21266 -21.26818 -20.85813 -19.74250 -18.83934 -16.18439 -15.52197 -15.02972 -14.45430 -14.41865 -13.86150 -13.61797 -13.23823 -13.19037 -12.69868 -12.37254 -12.05970 -11.79919 -11.46609 -11.28370 -11.19784 -10.86815 -10.77439 -10.66528 -10.46567 -10.36364 -10.33146 -10.20881 -10.08510 -9.33783 -8.72778 -8.30636 -7.99462 -7.42278 -5.89547 -3.90417 3.40315 3.43869 3.47516 4.52804 4.68682 4.94208 5.06329 5.16131 5.26317 5.39263 5.41150 5.51167 5.54354 5.68691 5.78150 5.84850 5.95136 5.96004 6.06204 6.14519 6.19765 6.24377 6.28898 6.32436 6.41563 6.54581 6.58241 6.65912 6.74706 6.79355 6.97919 7.17171 7.52430 7.66830 8.03432 8.07169 8.28458 8.63252 9.08021 9.72129 11.20597 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.006044 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.154371 B = 4631.554502 C = 5213.708348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.091 4.091 5 H 0.080 0.920 6 C -0.148 4.148 7 C 0.065 3.935 8 N -0.670 5.670 9 C 0.107 3.893 10 C 0.054 3.946 11 C -0.469 4.469 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.277 1.277 19 C -0.216 4.216 20 C -0.160 4.160 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.014 0.986 33 H 0.328 0.672 34 H 0.076 0.924 35 H -0.009 1.009 36 H 0.257 0.743 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 -7.190 -7.018 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.110 4.110 5 H 0.098 0.902 6 C -0.206 4.206 7 C -0.064 4.064 8 N -0.300 5.300 9 C -0.021 4.021 10 C 0.053 3.947 11 C -0.507 4.507 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.525 5.525 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.203 1.203 19 C -0.253 4.253 20 C -0.199 4.199 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.146 0.854 34 H 0.094 0.906 35 H 0.010 0.990 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.938 -7.122 -6.206 13.711 hybrid contribution 0.252 0.156 -0.032 0.298 sum -9.686 -6.966 -6.238 13.463 Atomic orbital electron populations 1.21784 0.96351 1.01192 1.01634 1.21575 0.95295 0.97344 1.02060 1.21623 0.95369 0.96401 1.01749 1.21170 0.94159 0.97006 0.98642 0.90201 1.21886 1.01456 1.00195 0.97015 1.21949 0.90178 0.95046 0.99256 1.60285 1.02724 1.18673 1.48326 1.21531 0.96827 0.86787 0.97004 1.18826 0.87379 0.96816 0.91692 1.20269 1.44054 0.95725 0.90614 0.92347 1.24931 0.95199 0.94938 0.98381 1.69999 1.45637 1.08752 1.28077 0.86732 0.79638 0.78768 0.83232 1.20472 1.21567 1.20289 1.22981 1.03926 1.01693 0.96736 1.22527 1.04006 0.90130 1.03202 0.93108 0.92845 0.92991 0.91957 0.92024 0.92016 0.92426 0.92216 0.92857 0.93441 0.91544 0.96830 0.85399 0.90589 0.99049 0.93325 0.90547 0.92276 0.92210 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.13 -1.28 5.69 -26.73 -0.15 -1.43 16 3 C -0.11 -1.32 4.68 -26.73 -0.13 -1.45 16 4 C -0.09 -1.26 2.60 -90.62 -0.24 -1.49 16 5 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 6 C -0.15 -1.85 8.72 37.16 0.32 -1.52 16 7 C 0.07 1.10 5.13 -3.82 -0.02 1.08 16 8 N -0.67 -13.46 6.38 -113.78 -0.73 -14.19 16 9 C 0.11 2.47 5.51 -3.83 -0.02 2.45 16 10 C 0.05 1.34 1.53 -155.66 -0.24 1.10 16 11 C -0.47 -13.00 8.73 -34.44 -0.30 -13.30 16 12 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 13 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 14 N -0.89 -25.60 12.97 55.43 0.72 -24.88 16 15 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.22 -4.79 9.96 -26.69 -0.27 -5.06 16 20 C -0.16 -3.86 9.48 -26.69 -0.25 -4.11 16 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.80 6.68 -51.93 -0.35 0.45 16 29 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.33 6.18 7.04 -39.29 -0.28 5.91 16 34 H 0.08 1.96 8.13 -51.93 -0.42 1.53 16 35 H -0.01 -0.19 8.09 -51.92 -0.42 -0.61 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -28.27 320.74 -8.82 -37.10 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.61 Total: 3.40 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -1.01 Total: -22.96 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.01 Total: -39.07 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.27 -8.82 -37.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308621937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.050 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds