Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47792 * 304.99965 * 4 3 2 6 6 C 1.53007 * 109.46966 * 64.99722 * 4 3 2 7 7 C 1.52995 * 109.47377 * 184.99695 * 4 3 2 8 8 N 1.46905 * 109.47626 * 175.00233 * 7 4 3 9 9 C 1.46895 * 111.00231 * 180.02562 * 8 7 4 10 10 C 1.52991 * 109.47341 * 174.70765 * 9 8 7 11 11 C 1.50700 * 115.54942 * 294.92212 * 10 9 8 12 12 H 1.08001 * 120.00223 * 95.23839 * 11 10 9 13 13 C 1.37882 * 119.99985 * 275.51843 * 11 10 9 14 14 N 1.31510 * 119.99845 * 6.82691 * 13 11 10 15 15 Si 1.86801 * 119.99960 * 186.81902 * 13 11 10 16 16 H 1.48511 * 109.46764 * 60.00434 * 15 13 11 17 17 H 1.48498 * 109.47009 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47576 * 300.00399 * 15 13 11 19 19 C 1.53002 * 117.50211 * 80.58746 * 10 9 8 20 20 C 1.52997 * 117.50254 * 149.25057 * 10 9 8 21 21 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47257 * 300.00166 * 1 2 3 23 23 H 1.09000 * 109.46670 * 60.00437 * 1 2 3 24 24 H 1.08998 * 109.47207 * 239.99300 * 2 1 3 25 25 H 1.09007 * 109.46999 * 119.99340 * 2 1 3 26 26 H 1.08995 * 109.47240 * 59.99824 * 3 2 1 27 27 H 1.09000 * 109.47041 * 299.99336 * 3 2 1 28 28 H 1.09000 * 109.46693 * 179.97438 * 6 4 3 29 29 H 1.08995 * 109.47053 * 299.99933 * 6 4 3 30 30 H 1.08997 * 109.47103 * 60.00168 * 6 4 3 31 31 H 1.09005 * 109.47175 * 54.99583 * 7 4 3 32 32 H 1.08997 * 109.47201 * 295.00489 * 7 4 3 33 33 H 1.00896 * 110.99695 * 56.04222 * 8 7 4 34 34 H 1.09005 * 109.47411 * 54.70385 * 9 8 7 35 35 H 1.09008 * 109.46921 * 294.70828 * 9 8 7 36 36 H 0.96998 * 120.00085 * 180.02562 * 14 13 11 37 37 H 1.09002 * 117.50366 * 215.00501 * 19 10 9 38 38 H 1.08998 * 117.49551 * 0.02714 * 19 10 9 39 39 H 1.09004 * 117.49784 * 359.97438 * 20 10 9 40 40 H 1.09002 * 117.49862 * 144.97628 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0800 2.8795 0.1263 8 7 5.5440 2.8708 0.2473 9 6 6.0702 4.2368 0.3707 10 6 7.5776 4.1815 0.6263 11 6 7.9928 3.5556 1.9328 12 1 8.2629 2.5105 1.9692 13 6 8.0223 4.3157 3.0828 14 7 7.5617 5.5474 3.0688 15 14 8.7163 3.5958 4.6606 16 1 10.1351 3.2123 4.4476 17 1 8.6339 4.6075 5.7445 18 1 7.9313 2.3951 5.0442 19 6 8.4916 3.9669 -0.5818 20 6 8.4270 5.3381 0.0956 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6768 1.9563 -0.8900 28 1 5.1705 0.8331 -1.3061 29 1 3.7173 -0.1911 -1.3959 30 1 3.7176 1.4219 -2.1485 31 1 3.6449 3.3434 1.0116 32 1 3.7919 3.4460 -0.7592 33 1 5.9682 2.3885 -0.5308 34 1 5.5789 4.7416 1.2026 35 1 5.8779 4.7849 -0.5516 36 1 7.5828 6.0823 3.8777 37 1 9.3932 3.3730 -0.4316 38 1 8.0190 3.8655 -1.5587 39 1 7.9119 6.1382 -0.4360 40 1 9.2859 5.6465 0.6917 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308621937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = -21.286502 kcal Electronic energy + Delta-G solvation = -15777.376369 eV Core-core repulsion = 13398.028683 eV Total energy + Delta-G solvation = -2379.347686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.15586 -38.03989 -35.33422 -33.89727 -32.43413 -28.03336 -27.61101 -27.03823 -24.68553 -22.89504 -22.08730 -21.07933 -20.58940 -18.08446 -16.92842 -16.47564 -16.26138 -15.63559 -15.38731 -15.17088 -14.54139 -14.37012 -14.22747 -13.58211 -13.34600 -13.10323 -12.99214 -12.84540 -12.67724 -12.52295 -12.35133 -12.20017 -12.01173 -11.78234 -11.57545 -11.45596 -11.27911 -11.06842 -10.72267 -10.35685 -9.90984 -9.02533 -8.02801 -6.08844 1.44071 1.45091 1.51987 2.48695 3.26895 3.29666 3.65593 3.97262 4.03051 4.13347 4.29621 4.39820 4.45196 4.55834 4.58428 4.66419 4.71642 4.80127 4.84551 4.88652 4.98618 4.99619 5.02992 5.07818 5.09657 5.18996 5.25974 5.28059 5.32612 5.43835 5.58211 5.59393 5.64120 5.76063 5.88980 6.38616 6.53395 6.79679 6.94339 7.56134 9.06370 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.006044 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.154371 B = 4631.554502 C = 5213.708348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.084 4.084 5 H 0.062 0.938 6 C -0.144 4.144 7 C 0.067 3.933 8 N -0.681 5.681 9 C 0.122 3.878 10 C 0.024 3.976 11 C -0.481 4.481 12 H 0.048 0.952 13 C 0.021 3.979 14 N -0.913 5.913 15 Si 0.945 3.055 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.187 4.187 20 C -0.168 4.168 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.025 0.975 33 H 0.337 0.663 34 H 0.039 0.961 35 H 0.004 0.996 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 -8.418 -8.111 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.103 4.103 5 H 0.080 0.920 6 C -0.201 4.201 7 C -0.062 4.062 8 N -0.312 5.312 9 C -0.008 4.008 10 C 0.024 3.976 11 C -0.519 4.519 12 H 0.066 0.934 13 C -0.178 4.178 14 N -0.552 5.552 15 Si 0.772 3.228 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.224 4.224 20 C -0.206 4.206 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.156 0.844 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.538 -8.366 -7.309 15.313 hybrid contribution 0.431 0.528 0.283 0.738 sum -10.107 -7.838 -7.026 14.593 Atomic orbital electron populations 1.21770 0.95269 1.01967 1.01821 1.21553 0.96236 0.96071 1.02176 1.21579 0.93592 0.97653 1.01836 1.21097 0.95644 0.94635 0.98950 0.91955 1.21847 1.00744 1.01282 0.96232 1.21992 0.88143 0.97236 0.98858 1.60184 1.04695 1.17131 1.49216 1.21184 0.95354 0.88203 0.96012 1.18941 0.88793 0.97849 0.92063 1.20513 1.43801 0.95341 0.92230 0.93429 1.25594 0.95632 0.95351 1.01211 1.70107 1.46714 1.09768 1.28645 0.85823 0.79116 0.78004 0.79881 1.19829 1.21283 1.20151 1.22966 1.02944 0.99583 0.96883 1.22451 1.03266 0.91181 1.03701 0.92071 0.93093 0.92413 0.91161 0.92594 0.92747 0.91554 0.93257 0.91128 0.92499 0.93329 0.95722 0.84357 0.94232 0.97831 0.93534 0.90486 0.89329 0.91115 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.12 -2.27 5.69 30.60 0.17 -2.09 16 3 C -0.11 -2.37 4.68 30.59 0.14 -2.22 16 4 C -0.08 -2.23 2.60 -10.79 -0.03 -2.26 16 5 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 6 C -0.14 -3.26 8.72 71.98 0.63 -2.63 16 7 C 0.07 2.21 5.13 86.30 0.44 2.65 16 8 N -0.68 -27.04 6.38 -513.89 -3.28 -30.32 16 9 C 0.12 5.60 5.51 86.30 0.48 6.08 16 10 C 0.02 1.20 1.53 -52.93 -0.08 1.12 16 11 C -0.48 -26.84 8.73 25.60 0.22 -26.62 16 12 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 13 C 0.02 1.18 5.39 84.66 0.46 1.64 16 14 N -0.91 -53.59 12.97 21.45 0.28 -53.31 16 15 Si 0.95 44.93 29.54 68.60 2.03 46.95 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 C -0.19 -7.95 9.96 30.62 0.30 -7.64 16 20 C -0.17 -8.01 9.48 30.62 0.29 -7.72 16 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 1.19 6.57 -2.39 -0.02 1.17 16 25 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.22 6.68 -2.39 -0.02 1.20 16 29 H 0.07 1.36 6.57 -2.39 -0.02 1.34 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.34 12.26 7.04 -89.70 -0.63 11.63 16 34 H 0.04 2.08 8.13 -2.38 -0.02 2.06 16 35 H 0.00 0.16 8.09 -2.38 -0.02 0.14 16 36 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -59.94 320.74 3.11 -56.83 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.34 Total: 21.21 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 3.74 Total: -41.37 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -3.00 Total: -83.63 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -59.94 3.11 -56.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308621937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.545 kcal (2) G-P(sol) polarization free energy of solvation -59.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds