Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 H 1.09001 * 109.47451 * 54.99697 * 3 2 1 5 5 N 1.46900 * 109.46865 * 294.99744 * 3 2 1 6 6 C 1.46894 * 111.00280 * 298.31951 * 5 3 2 7 7 C 1.53003 * 109.47449 * 185.36880 * 6 5 3 8 8 C 1.52996 * 109.47282 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47282 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47246 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00097 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99974 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99987 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00052 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47319 * 89.99809 * 14 12 10 16 16 H 1.48507 * 109.47400 * 209.99998 * 14 12 10 17 17 H 1.48502 * 109.47514 * 329.99929 * 14 12 10 18 18 C 1.52998 * 109.47046 * 175.00136 * 3 2 1 19 19 C 1.53004 * 117.49893 * 254.22282 * 18 3 2 20 20 C 1.53003 * 117.49779 * 185.56382 * 18 3 2 21 21 H 1.08997 * 109.47412 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46963 * 300.00555 * 1 2 3 23 23 H 1.08998 * 109.47311 * 59.99891 * 1 2 3 24 24 H 1.09001 * 109.46963 * 239.99445 * 2 1 3 25 25 H 1.09008 * 109.46947 * 119.99742 * 2 1 3 26 26 H 1.00902 * 111.00351 * 62.27522 * 5 3 2 27 27 H 1.09003 * 109.47527 * 305.36906 * 6 5 3 28 28 H 1.09000 * 109.47588 * 65.36573 * 6 5 3 29 29 H 1.09006 * 109.46422 * 299.99809 * 7 6 5 30 30 H 1.08993 * 109.47260 * 59.99597 * 7 6 5 31 31 H 1.09004 * 109.46804 * 299.99655 * 8 7 6 32 32 H 1.08993 * 109.47601 * 59.99440 * 8 7 6 33 33 H 1.09006 * 109.46422 * 299.99444 * 9 8 7 34 34 H 1.08993 * 109.47260 * 59.99231 * 9 8 7 35 35 H 0.96996 * 120.00187 * 180.02562 * 13 12 10 36 36 H 1.08995 * 115.55431 * 39.89398 * 18 3 2 37 37 H 1.09007 * 117.49794 * 359.97438 * 19 18 3 38 38 H 1.08994 * 117.50370 * 145.02377 * 19 18 3 39 39 H 1.08999 * 117.49970 * 214.97846 * 20 18 3 40 40 H 1.08997 * 117.49806 * 359.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6514 2.0992 -1.2553 6 6 2.2529 1.4221 -2.4118 7 6 1.9369 2.2095 -3.6850 8 6 2.5628 1.5039 -4.8897 9 6 2.2473 2.2917 -6.1628 10 6 2.8632 1.5963 -7.3494 11 1 3.4240 0.6840 -7.2095 12 6 2.7109 2.1248 -8.6137 13 7 2.0276 3.2355 -8.7841 14 14 3.4750 1.2633 -10.0845 15 1 2.5058 0.2879 -10.6454 16 1 3.8223 2.2681 -11.1214 17 1 4.7044 0.5490 -9.6561 18 6 3.5648 1.4442 0.1257 19 6 4.1621 1.8518 1.4741 20 6 4.2597 2.7991 0.2756 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.6473 2.1438 -1.3443 27 1 3.3332 1.3654 -2.2784 28 1 1.8441 0.4152 -2.4965 29 1 0.8565 2.2660 -3.8184 30 1 2.3457 3.2163 -3.6004 31 1 3.6431 1.4470 -4.7564 32 1 2.1536 0.4972 -4.9741 33 1 1.1669 2.3489 -6.2962 34 1 2.6568 3.2982 -6.0781 35 1 1.9201 3.6072 -9.6736 36 1 4.0843 0.6723 -0.4421 37 1 3.4686 2.1191 2.2715 38 1 5.0746 1.3484 1.7932 39 1 5.2365 2.9183 -0.1933 40 1 3.6306 3.6891 0.2842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323946133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = -10.687641 kcal Electronic energy + Delta-G solvation = -15445.701545 eV Core-core repulsion = 13066.813460 eV Total energy + Delta-G solvation = -2378.888085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.93513 -35.85556 -34.41615 -32.67094 -31.16960 -28.28995 -26.16496 -24.30627 -22.40718 -21.92102 -21.64193 -19.97144 -19.33391 -16.30381 -15.89146 -15.81910 -15.12630 -14.58891 -14.38993 -14.06696 -13.84166 -13.00966 -12.73628 -12.36086 -12.17586 -11.68760 -11.66373 -11.52282 -11.32622 -11.10289 -10.88878 -10.80074 -10.51559 -10.42955 -10.35354 -10.21474 -10.10775 -9.57009 -9.20710 -8.95645 -8.29636 -8.23107 -5.94496 -3.96555 3.34741 3.40710 3.44384 3.71212 4.42695 4.45524 4.51628 4.81897 4.93006 5.00839 5.07702 5.20431 5.34329 5.40901 5.48204 5.54979 5.58157 5.65971 5.74066 5.82576 5.89853 5.95605 5.99728 6.07434 6.12687 6.23981 6.30501 6.37831 6.59439 6.90189 7.04054 7.13705 7.31293 7.52826 7.75190 7.91872 8.07145 8.50072 9.11073 9.67088 11.16916 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037769 B = 0.004345 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.176480 B = 6443.152766 C = 6736.512345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.119 3.881 4 H 0.077 0.923 5 N -0.681 5.681 6 C 0.057 3.943 7 C -0.114 4.114 8 C -0.108 4.108 9 C 0.021 3.979 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.145 4.145 19 C -0.184 4.184 20 C -0.160 4.160 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.338 0.662 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -4.212 19.897 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.199 4.199 3 C 0.008 3.992 4 H 0.095 0.905 5 N -0.311 5.311 6 C -0.071 4.071 7 C -0.152 4.152 8 C -0.147 4.147 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.164 4.164 19 C -0.222 4.222 20 C -0.197 4.197 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.157 0.843 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.363 -3.599 19.794 20.122 hybrid contribution -0.147 -1.306 -0.985 1.643 sum 0.216 -4.905 18.809 19.439 Atomic orbital electron populations 1.21773 0.95779 1.01790 1.01738 1.22245 0.96181 0.98838 1.02621 1.21138 0.92634 0.92249 0.93135 0.90464 1.60663 1.14732 1.54346 1.01351 1.22088 0.99728 0.95263 0.90054 1.21613 1.00524 0.99796 0.93261 1.21581 0.98991 0.98886 0.95200 1.19092 0.96760 0.95268 0.90498 1.21299 1.33145 1.09285 0.92041 0.92818 1.25030 0.95464 0.95024 0.99004 1.69969 1.41141 1.20111 1.22375 0.86620 0.79628 0.79310 0.82586 1.20722 1.21233 1.19914 1.22207 0.94661 0.99493 1.00040 1.22987 1.02707 1.04814 0.91644 1.22802 1.01762 0.94223 1.00904 0.92677 0.92742 0.92639 0.91409 0.91712 0.84300 0.91108 0.95513 0.92973 0.91803 0.93574 0.93813 0.96775 0.96618 0.93077 0.88241 0.89116 0.89169 0.89174 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.68 37.16 0.36 -1.04 16 2 C -0.16 -1.58 5.23 -26.73 -0.14 -1.72 16 3 C 0.12 1.26 2.71 -67.72 -0.18 1.08 16 4 H 0.08 0.79 7.95 -51.93 -0.41 0.38 16 5 N -0.68 -8.53 6.35 -106.73 -0.68 -9.21 16 6 C 0.06 0.83 4.97 -3.83 -0.02 0.81 16 7 C -0.11 -2.01 5.52 -26.73 -0.15 -2.16 16 8 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 11 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 14 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.15 -1.56 3.88 -90.62 -0.35 -1.91 16 19 C -0.18 -1.69 10.18 -26.69 -0.27 -1.96 16 20 C -0.16 -1.72 10.22 -26.69 -0.27 -1.99 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.54 6.83 -51.93 -0.35 0.18 16 24 H 0.07 0.75 6.31 -51.93 -0.33 0.43 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.34 4.01 7.27 -39.29 -0.29 3.72 16 27 H 0.07 1.05 6.54 -51.93 -0.34 0.71 16 28 H 0.03 0.38 6.52 -51.93 -0.34 0.04 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.10 1.13 7.65 -51.93 -0.40 0.73 16 37 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -30.10 318.49 -9.37 -39.46 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.49 Total: -0.40 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -1.71 Total: -24.85 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.06 Total: -36.06 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.10 -9.37 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323946133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.777 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds