Wall clock time and date at job start Mon Mar 30 2020 03:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 H 1.09001 * 109.47025 * 177.70199 * 3 2 1 5 5 C 1.53002 * 109.47347 * 57.69547 * 3 2 1 6 6 C 1.52993 * 117.49854 * 128.74714 * 5 3 2 7 7 C 1.52995 * 117.49791 * 60.08676 * 5 3 2 8 8 N 1.46901 * 109.46738 * 297.69593 * 3 2 1 9 9 C 1.46904 * 110.99997 * 169.65868 * 8 3 2 10 10 C 1.46900 * 111.00382 * 293.60984 * 8 3 2 11 11 C 1.52998 * 109.47120 * 164.36396 * 10 8 3 12 12 C 1.53000 * 109.46929 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47323 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99644 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00475 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99753 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00226 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47299 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47268 * 120.00040 * 17 15 13 20 20 H 1.48498 * 109.47339 * 240.00231 * 17 15 13 21 21 H 1.09003 * 109.46395 * 174.73078 * 1 2 3 22 22 H 1.08998 * 109.46629 * 54.73839 * 1 2 3 23 23 H 1.08994 * 109.47550 * 294.73134 * 1 2 3 24 24 H 1.09001 * 109.47020 * 119.99577 * 2 1 3 25 25 H 1.09000 * 109.47475 * 239.99588 * 2 1 3 26 26 H 1.09000 * 115.54766 * 274.42389 * 5 3 2 27 27 H 1.09002 * 117.50249 * 0.02562 * 6 5 3 28 28 H 1.09003 * 117.49819 * 145.01837 * 6 5 3 29 29 H 1.08999 * 117.50343 * 214.98001 * 7 5 3 30 30 H 1.08998 * 117.49705 * 0.02562 * 7 5 3 31 31 H 1.09002 * 109.46763 * 59.99766 * 9 8 3 32 32 H 1.09000 * 109.47478 * 180.02562 * 9 8 3 33 33 H 1.09007 * 109.46926 * 300.00185 * 9 8 3 34 34 H 1.08997 * 109.47216 * 284.37169 * 10 8 3 35 35 H 1.09007 * 109.46366 * 44.37314 * 10 8 3 36 36 H 1.08997 * 109.47707 * 300.00472 * 11 10 8 37 37 H 1.08998 * 109.46887 * 60.01155 * 11 10 8 38 38 H 1.09001 * 109.47416 * 300.00237 * 12 11 10 39 39 H 1.08998 * 109.47325 * 60.00244 * 12 11 10 40 40 H 0.96994 * 120.00003 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0412 5 6 1.4832 2.1804 1.2192 6 6 2.4791 2.9274 2.1084 7 6 1.8372 1.6282 2.6015 8 7 1.5963 2.1187 -1.2263 9 6 1.8528 3.5633 -1.1533 10 6 2.2334 1.5303 -2.4120 11 6 1.4799 1.9722 -3.6681 12 6 2.1431 1.3588 -4.9029 13 6 1.4013 1.7945 -6.1402 14 1 0.5424 2.4437 -6.0544 15 6 1.8191 1.3645 -7.3819 16 7 2.8646 0.5737 -7.4864 17 14 0.8991 1.9041 -8.9154 18 1 -0.2323 2.7853 -8.5297 19 1 1.8219 2.6474 -9.8104 20 1 0.3766 0.7090 -9.6254 21 1 -0.3632 -1.0234 -0.0944 22 1 -0.3632 0.5933 -0.8391 23 1 -0.3634 0.4299 0.9333 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 0.4942 2.6204 1.0912 27 1 3.5311 2.8936 1.8247 28 1 2.1453 3.8588 2.5657 29 1 1.0813 1.7054 3.3830 30 1 2.4671 0.7396 2.6423 31 1 2.9213 3.7365 -1.0257 32 1 1.5144 4.0394 -2.0736 33 1 1.3124 3.9858 -0.3061 34 1 3.2687 1.8658 -2.4724 35 1 2.2075 0.4431 -2.3364 36 1 0.4446 1.6366 -3.6077 37 1 1.5057 3.0592 -3.7437 38 1 3.1785 1.6940 -4.9636 39 1 2.1170 0.2718 -4.8272 40 1 3.1583 0.2709 -8.3598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324745042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:07 Heat of formation + Delta-G solvation = 6.309571 kcal Electronic energy + Delta-G solvation = -15908.383485 eV Core-core repulsion = 13530.232455 eV Total energy + Delta-G solvation = -2378.151030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.17119 -36.14184 -33.66495 -32.60144 -31.07534 -27.07552 -26.80370 -24.28653 -22.85228 -22.38067 -21.63100 -19.78495 -18.94043 -16.47453 -16.20534 -14.98921 -14.87550 -14.82679 -14.33176 -13.73102 -13.32556 -13.16731 -12.65569 -12.22746 -12.14970 -11.75334 -11.71191 -11.36735 -11.28729 -11.12955 -10.86778 -10.75223 -10.55727 -10.52173 -10.34603 -10.26921 -9.84897 -9.51195 -9.26159 -8.99283 -8.30349 -7.94230 -5.95646 -3.97258 3.33952 3.41230 3.45956 3.70656 4.15170 4.50698 4.64633 4.84008 4.95927 5.23350 5.28853 5.39859 5.40313 5.49505 5.52669 5.60295 5.72031 5.76616 5.84510 5.93189 5.99794 6.01262 6.09846 6.20891 6.22631 6.25790 6.33032 6.48477 6.62817 6.77450 6.89464 7.20645 7.46759 7.51329 7.74357 7.89735 8.05612 8.49412 9.10372 9.66571 11.15943 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050091 B = 0.004846 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.848890 B = 5776.400498 C = 5943.587831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.114 3.886 4 H 0.035 0.965 5 C -0.135 4.135 6 C -0.186 4.186 7 C -0.177 4.177 8 N -0.533 5.533 9 C 0.026 3.974 10 C 0.052 3.948 11 C -0.101 4.101 12 C 0.021 3.979 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.042 0.958 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.018 0.982 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.012 0.988 39 H 0.015 0.985 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 2.129 18.327 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C 0.005 3.995 4 H 0.053 0.947 5 C -0.153 4.153 6 C -0.223 4.223 7 C -0.215 4.215 8 N -0.257 5.257 9 C -0.122 4.122 10 C -0.075 4.075 11 C -0.139 4.139 12 C -0.017 4.017 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.037 0.963 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.099 1.971 18.154 18.381 hybrid contribution 0.558 0.389 -0.833 1.075 sum -1.541 2.360 17.321 17.549 Atomic orbital electron populations 1.21629 0.95058 1.00789 1.02337 1.21560 0.97433 0.94812 1.01366 1.21199 0.95891 0.93811 0.88600 0.94744 1.22270 0.99919 1.02532 0.90574 1.23054 0.98593 0.95928 1.04752 1.22920 1.03678 0.97485 0.97401 1.62077 1.58833 1.03019 1.01751 1.22372 0.98511 0.88946 1.02369 1.22368 0.95706 0.99401 0.89977 1.21605 0.99359 0.99744 0.93236 1.19082 0.95689 0.95977 0.90917 1.21302 1.13350 1.29426 0.91339 0.92645 1.25029 0.95151 0.95231 0.99138 1.69978 1.25208 1.34659 1.23847 0.86554 0.79877 0.78431 0.83257 1.19722 1.21095 1.21039 0.93891 0.90998 0.93380 0.92366 0.91590 0.87144 0.89186 0.89078 0.88994 0.88977 0.96345 0.91073 0.91815 0.95507 0.91072 0.92698 0.93574 0.96925 0.96681 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.46 37.16 0.35 -1.40 16 2 C -0.11 -1.43 5.40 -26.73 -0.14 -1.57 16 3 C 0.11 1.47 2.01 -67.71 -0.14 1.34 16 4 H 0.03 0.47 7.88 -51.93 -0.41 0.06 16 5 C -0.13 -1.47 2.38 -90.62 -0.22 -1.69 16 6 C -0.19 -1.80 10.18 -26.70 -0.27 -2.07 16 7 C -0.18 -1.65 9.77 -26.70 -0.26 -1.91 16 8 N -0.53 -8.09 3.83 -234.87 -0.90 -8.99 16 9 C 0.03 0.37 8.98 60.07 0.54 0.91 16 10 C 0.05 0.94 4.84 -3.82 -0.02 0.92 16 11 C -0.10 -2.16 5.20 -26.73 -0.14 -2.30 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 1.03 7.52 -51.93 -0.39 0.64 16 23 H 0.05 0.54 7.34 -51.93 -0.38 0.16 16 24 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 25 H 0.07 0.91 6.21 -51.93 -0.32 0.59 16 26 H 0.11 1.27 7.75 -51.93 -0.40 0.87 16 27 H 0.09 0.89 8.05 -51.93 -0.42 0.48 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.84 7.63 -51.93 -0.40 0.44 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 1.07 6.55 -51.93 -0.34 0.73 16 33 H 0.06 0.78 6.59 -51.92 -0.34 0.44 16 34 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.07 1.28 5.93 -51.92 -0.31 0.97 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.97 6.68 -51.93 -0.35 0.63 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -29.76 312.34 -8.68 -38.44 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.36 Total: -3.37 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.84 Total: -21.09 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.16 Total: -35.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.76 -8.68 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324745042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.747 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds