Wall clock time and date at job start Mon Mar 30 2020 03:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 H 1.09001 * 109.47025 * 177.70199 * 3 2 1 5 5 C 1.53002 * 109.47347 * 57.69547 * 3 2 1 6 6 C 1.52993 * 117.49854 * 128.74714 * 5 3 2 7 7 C 1.52995 * 117.49791 * 60.08676 * 5 3 2 8 8 N 1.46901 * 109.46738 * 297.69593 * 3 2 1 9 9 C 1.46904 * 110.99997 * 169.65868 * 8 3 2 10 10 C 1.46900 * 111.00382 * 293.60984 * 8 3 2 11 11 C 1.52998 * 109.47120 * 164.36396 * 10 8 3 12 12 C 1.53000 * 109.46929 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47323 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99644 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00475 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99753 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00226 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47299 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47268 * 120.00040 * 17 15 13 20 20 H 1.48498 * 109.47339 * 240.00231 * 17 15 13 21 21 H 1.09003 * 109.46395 * 174.73078 * 1 2 3 22 22 H 1.08998 * 109.46629 * 54.73839 * 1 2 3 23 23 H 1.08994 * 109.47550 * 294.73134 * 1 2 3 24 24 H 1.09001 * 109.47020 * 119.99577 * 2 1 3 25 25 H 1.09000 * 109.47475 * 239.99588 * 2 1 3 26 26 H 1.09000 * 115.54766 * 274.42389 * 5 3 2 27 27 H 1.09002 * 117.50249 * 0.02562 * 6 5 3 28 28 H 1.09003 * 117.49819 * 145.01837 * 6 5 3 29 29 H 1.08999 * 117.50343 * 214.98001 * 7 5 3 30 30 H 1.08998 * 117.49705 * 0.02562 * 7 5 3 31 31 H 1.09002 * 109.46763 * 59.99766 * 9 8 3 32 32 H 1.09000 * 109.47478 * 180.02562 * 9 8 3 33 33 H 1.09007 * 109.46926 * 300.00185 * 9 8 3 34 34 H 1.08997 * 109.47216 * 284.37169 * 10 8 3 35 35 H 1.09007 * 109.46366 * 44.37314 * 10 8 3 36 36 H 1.08997 * 109.47707 * 300.00472 * 11 10 8 37 37 H 1.08998 * 109.46887 * 60.01155 * 11 10 8 38 38 H 1.09001 * 109.47416 * 300.00237 * 12 11 10 39 39 H 1.08998 * 109.47325 * 60.00244 * 12 11 10 40 40 H 0.96994 * 120.00003 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0412 5 6 1.4832 2.1804 1.2192 6 6 2.4791 2.9274 2.1084 7 6 1.8372 1.6282 2.6015 8 7 1.5963 2.1187 -1.2263 9 6 1.8528 3.5633 -1.1533 10 6 2.2334 1.5303 -2.4120 11 6 1.4799 1.9722 -3.6681 12 6 2.1431 1.3588 -4.9029 13 6 1.4013 1.7945 -6.1402 14 1 0.5424 2.4437 -6.0544 15 6 1.8191 1.3645 -7.3819 16 7 2.8646 0.5737 -7.4864 17 14 0.8991 1.9041 -8.9154 18 1 -0.2323 2.7853 -8.5297 19 1 1.8219 2.6474 -9.8104 20 1 0.3766 0.7090 -9.6254 21 1 -0.3632 -1.0234 -0.0944 22 1 -0.3632 0.5933 -0.8391 23 1 -0.3634 0.4299 0.9333 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 0.4942 2.6204 1.0912 27 1 3.5311 2.8936 1.8247 28 1 2.1453 3.8588 2.5657 29 1 1.0813 1.7054 3.3830 30 1 2.4671 0.7396 2.6423 31 1 2.9213 3.7365 -1.0257 32 1 1.5144 4.0394 -2.0736 33 1 1.3124 3.9858 -0.3061 34 1 3.2687 1.8658 -2.4724 35 1 2.2075 0.4431 -2.3364 36 1 0.4446 1.6366 -3.6077 37 1 1.5057 3.0592 -3.7437 38 1 3.1785 1.6940 -4.9636 39 1 2.1170 0.2718 -4.8272 40 1 3.1583 0.2709 -8.3598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324745042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:07 Heat of formation + Delta-G solvation = -9.838792 kcal Electronic energy + Delta-G solvation = -15909.083731 eV Core-core repulsion = 13530.232455 eV Total energy + Delta-G solvation = -2378.851276 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22074 -37.32115 -35.53976 -33.90276 -32.85122 -28.86613 -27.87788 -25.96434 -23.94367 -23.19592 -23.10884 -21.47482 -19.94228 -18.46097 -17.50706 -16.56607 -16.08355 -16.02279 -15.87301 -15.09359 -14.60362 -14.33372 -14.06411 -13.88515 -13.63356 -13.15282 -12.99396 -12.70476 -12.60739 -12.48270 -12.41483 -12.24774 -12.01946 -11.80076 -11.57952 -11.44550 -11.23629 -11.18134 -10.94594 -10.71880 -10.55267 -9.18902 -8.19985 -6.30961 1.40018 1.40350 1.54145 2.41166 2.84370 3.06674 3.13111 3.73663 4.02221 4.10090 4.20245 4.24887 4.30568 4.35130 4.44446 4.59890 4.61444 4.71447 4.75152 4.81917 4.90264 4.94192 5.05345 5.07204 5.07939 5.13759 5.22714 5.29211 5.30203 5.34559 5.38987 5.52522 5.62267 5.75018 5.86542 6.15143 6.26695 6.31119 6.85931 7.38310 8.92301 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050091 B = 0.004846 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.848890 B = 5776.400498 C = 5943.587831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C 0.114 3.886 4 H 0.028 0.972 5 C -0.145 4.145 6 C -0.182 4.182 7 C -0.164 4.164 8 N -0.536 5.536 9 C 0.028 3.972 10 C 0.065 3.935 11 C -0.085 4.085 12 C 0.026 3.974 13 C -0.541 4.541 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.019 0.981 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.019 0.981 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.047 0.953 38 H -0.012 1.012 39 H -0.009 1.009 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 2.815 19.477 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C 0.006 3.994 4 H 0.046 0.954 5 C -0.164 4.164 6 C -0.219 4.219 7 C -0.202 4.202 8 N -0.260 5.260 9 C -0.120 4.120 10 C -0.063 4.063 11 C -0.123 4.123 12 C -0.012 4.012 13 C -0.579 4.579 14 H 0.077 0.923 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.006 0.994 39 H 0.009 0.991 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.038 2.664 19.325 19.742 hybrid contribution 0.880 0.155 -1.147 1.454 sum -2.157 2.819 18.178 18.521 Atomic orbital electron populations 1.21562 0.94810 1.00806 1.02058 1.21578 0.97593 0.94620 1.01406 1.21240 0.95590 0.94164 0.88365 0.95433 1.22109 1.00072 1.03777 0.90416 1.23108 0.98051 0.96798 1.03977 1.23005 1.03587 0.97356 0.96215 1.62020 1.58527 1.03755 1.01662 1.22389 0.98872 0.88109 1.02644 1.22066 0.94809 0.99343 0.90048 1.21340 0.98873 0.99333 0.92755 1.18976 0.94630 0.94618 0.92968 1.21712 1.13783 1.29788 0.92614 0.92341 1.25991 0.95987 0.95046 1.02828 1.70106 1.26721 1.35649 1.25010 0.85384 0.78695 0.78286 0.78600 1.18618 1.20289 1.20250 0.93356 0.93311 0.91916 0.90379 0.93473 0.87390 0.89604 0.87819 0.87459 0.88683 0.96230 0.92322 0.89653 0.96288 0.91341 0.93063 0.93381 0.99360 0.99065 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.46 71.98 0.68 -2.51 16 2 C -0.11 -2.75 5.40 30.60 0.17 -2.59 16 3 C 0.11 2.85 2.01 44.92 0.09 2.94 16 4 H 0.03 0.73 7.88 -2.39 -0.02 0.71 16 5 C -0.15 -2.86 2.38 -10.80 -0.03 -2.88 16 6 C -0.18 -3.05 10.18 30.62 0.31 -2.74 16 7 C -0.16 -2.55 9.77 30.62 0.30 -2.26 16 8 N -0.54 -16.03 3.83 -897.01 -3.44 -19.47 16 9 C 0.03 0.76 8.98 127.69 1.15 1.90 16 10 C 0.07 2.38 4.84 86.30 0.42 2.80 16 11 C -0.09 -3.71 5.20 30.59 0.16 -3.55 16 12 C 0.03 1.41 4.97 29.85 0.15 1.56 16 13 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 16 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 17 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 18 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.05 1.38 7.52 -2.39 -0.02 1.36 16 23 H 0.06 1.28 7.34 -2.39 -0.02 1.26 16 24 H 0.08 1.56 7.38 -2.39 -0.02 1.55 16 25 H 0.05 1.30 6.21 -2.39 -0.01 1.29 16 26 H 0.11 2.23 7.75 -2.39 -0.02 2.21 16 27 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.44 7.63 -2.39 -0.02 1.43 16 31 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 1.73 6.55 -2.39 -0.02 1.71 16 33 H 0.08 1.94 6.59 -2.38 -0.02 1.93 16 34 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 35 H 0.07 2.53 5.93 -2.38 -0.01 2.52 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.06 6.68 -2.39 -0.02 2.04 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -63.87 312.34 3.93 -59.94 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.97 Total: 8.61 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 4.09 Total: -38.52 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -3.15 Total: -77.22 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.87 3.93 -59.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324745042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.104 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds