Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47376 * 2 1 4 4 C 1.52998 * 109.46955 * 183.89892 * 3 2 1 5 5 H 1.08999 * 109.47315 * 54.42520 * 4 3 2 6 6 N 1.46900 * 109.47058 * 294.42500 * 4 3 2 7 7 C 1.46894 * 110.99849 * 100.28024 * 6 4 3 8 8 H 1.09001 * 109.47458 * 326.04749 * 7 6 4 9 9 C 1.52999 * 109.47258 * 86.04374 * 7 6 4 10 10 C 1.50705 * 109.47330 * 206.04354 * 7 6 4 11 11 H 1.08007 * 119.99466 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00189 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99981 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 120.00006 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47085 * 89.99453 * 14 12 10 16 16 H 1.48497 * 109.46978 * 209.99833 * 14 12 10 17 17 H 1.48505 * 109.46959 * 329.99378 * 14 12 10 18 18 C 1.52999 * 109.47063 * 174.42796 * 4 3 2 19 19 C 1.53780 * 113.61699 * 179.97438 * 18 4 3 20 20 C 1.53779 * 87.17325 * 140.02009 * 19 18 4 21 21 C 1.53779 * 87.08357 * 334.52820 * 20 19 18 22 22 H 1.08994 * 109.47188 * 300.00352 * 1 2 3 23 23 H 1.09005 * 109.46817 * 59.99888 * 1 2 3 24 24 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46824 * 239.99867 * 2 1 3 26 26 H 1.08996 * 109.46723 * 120.00389 * 2 1 3 27 27 H 1.09000 * 109.46978 * 63.89367 * 3 2 1 28 28 H 1.09001 * 109.47116 * 303.89598 * 3 2 1 29 29 H 1.00901 * 110.99969 * 224.23620 * 6 4 3 30 30 H 1.09001 * 109.47036 * 60.00114 * 9 7 6 31 31 H 1.08998 * 109.47549 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.47320 * 300.00333 * 9 7 6 33 33 H 0.96997 * 119.99712 * 180.02562 * 13 12 10 34 34 H 1.09004 * 112.90887 * 48.74307 * 18 4 3 35 35 H 1.08995 * 113.61384 * 25.43097 * 19 18 4 36 36 H 1.09001 * 113.61337 * 254.60916 * 19 18 4 37 37 H 1.09011 * 113.61412 * 89.07576 * 20 19 18 38 38 H 1.09002 * 113.61575 * 219.97379 * 20 19 18 39 39 H 1.08998 * 113.61686 * 139.97915 * 21 20 19 40 40 H 1.09005 * 113.61141 * 270.79733 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5669 1.4435 -0.0981 5 1 3.8755 0.8650 -0.9688 6 7 4.1360 0.8426 1.1157 7 6 4.5286 -0.5527 0.8779 8 1 3.8364 -1.0096 0.1707 9 6 5.9457 -0.5928 0.3025 10 6 4.4929 -1.3133 2.1785 11 1 4.2075 -0.8101 3.0906 12 6 4.8257 -2.6510 2.2043 13 7 5.1737 -3.2635 1.0937 14 14 4.7807 -3.5938 3.8163 15 1 3.4304 -4.1809 4.0088 16 1 5.7927 -4.6800 3.7828 17 1 5.0834 -2.6698 4.9387 18 6 4.0680 2.8823 -0.2380 19 6 5.5981 2.9942 -0.3439 20 6 5.3687 4.0855 -1.4028 21 6 4.0102 3.4205 -1.6803 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.7349 1.9357 0.9228 28 1 1.6209 1.9761 -0.8530 29 1 4.9159 1.3848 1.4561 30 1 6.6381 -0.1360 1.0096 31 1 6.2373 -1.6282 0.1265 32 1 5.9716 -0.0427 -0.6382 33 1 5.4075 -4.2047 1.1118 34 1 3.6311 3.5572 0.4980 35 1 6.0753 2.0970 -0.7380 36 1 6.0731 3.3615 0.5658 37 1 5.2864 5.0890 -0.9849 38 1 6.0612 4.0313 -2.2429 39 1 3.2019 4.1322 -1.8487 40 1 4.0530 2.6408 -2.4408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324890595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = -7.072184 kcal Electronic energy + Delta-G solvation = -16532.280128 eV Core-core repulsion = 14153.548821 eV Total energy + Delta-G solvation = -2378.731307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.13658 -35.97910 -33.86205 -32.05568 -29.65004 -26.64326 -25.43706 -25.07265 -24.89375 -21.52223 -20.03199 -19.86407 -19.09703 -16.24431 -15.48785 -14.91413 -14.87653 -14.40829 -13.48065 -13.40248 -13.04676 -12.55810 -12.22932 -12.01366 -11.95075 -11.69716 -11.60738 -11.08706 -11.04992 -10.86628 -10.68292 -10.54609 -10.48827 -10.18457 -10.08449 -10.01228 -9.79706 -9.71439 -9.40502 -8.83535 -8.28910 -7.08374 -5.92844 -3.95236 3.35626 3.41829 3.46029 4.48042 4.80389 4.86107 4.94712 5.08393 5.38272 5.44368 5.54278 5.72214 5.77580 5.82037 5.84517 5.97561 5.99243 6.02766 6.15294 6.16566 6.26501 6.41815 6.44655 6.48924 6.60822 6.68950 6.78327 6.82226 6.91146 6.99348 7.20355 7.24435 7.50619 7.81653 7.97869 8.38452 8.67856 8.74861 9.13031 9.70102 11.14028 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.008394 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.018858 B = 3334.927812 C = 4094.949084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.096 4.096 4 C 0.096 3.904 5 H 0.042 0.958 6 N -0.678 5.678 7 C 0.210 3.790 8 H 0.039 0.961 9 C -0.168 4.168 10 C -0.491 4.491 11 H 0.061 0.939 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.893 3.107 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.275 1.275 18 C -0.113 4.113 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.134 4.134 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.325 0.675 30 H 0.025 0.975 31 H 0.086 0.914 32 H 0.003 0.997 33 H 0.258 0.742 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 10.756 -4.666 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.135 4.135 4 C -0.014 4.014 5 H 0.060 0.940 6 N -0.308 5.308 7 C 0.102 3.898 8 H 0.057 0.943 9 C -0.228 4.228 10 C -0.530 4.530 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.722 3.278 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.200 1.200 18 C -0.132 4.132 19 C -0.178 4.178 20 C -0.180 4.180 21 C -0.172 4.172 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.142 0.858 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.022 0.978 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.438 10.394 -4.452 11.819 hybrid contribution 0.884 -0.525 0.248 1.058 sum -2.554 9.869 -4.204 11.027 Atomic orbital electron populations 1.21769 0.97395 1.00773 1.00517 1.21552 0.93966 0.97270 1.03412 1.21527 0.95113 0.96650 1.00182 1.21521 0.94700 0.91765 0.93425 0.93978 1.60813 1.36842 1.04764 1.28365 1.19295 0.91002 0.83238 0.96251 0.94288 1.22469 1.00963 1.03236 0.96109 1.21187 1.43622 0.93784 0.94385 0.92106 1.24935 0.95687 0.97707 0.96204 1.69886 1.47210 1.10574 1.26151 0.86571 0.77573 0.79502 0.84159 1.20841 1.21528 1.20023 1.22895 0.95752 0.97840 0.96738 1.22969 0.96739 0.99089 0.98987 1.22791 0.97752 0.98204 0.99252 1.22959 0.97044 0.99875 0.97340 0.93283 0.93948 0.93390 0.93187 0.89313 0.92238 0.93724 0.85823 0.95559 0.89512 0.97755 0.93215 0.89376 0.89908 0.91737 0.90659 0.91998 0.92010 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.87 16 2 C -0.12 -2.26 4.68 -26.73 -0.12 -2.39 16 3 C -0.10 -1.61 4.88 -26.73 -0.13 -1.74 16 4 C 0.10 1.70 1.81 -67.71 -0.12 1.58 16 5 H 0.04 0.82 7.02 -51.93 -0.36 0.46 16 6 N -0.68 -14.10 5.84 -100.96 -0.59 -14.69 16 7 C 0.21 5.17 1.57 -68.87 -0.11 5.06 16 8 H 0.04 1.05 6.11 -51.93 -0.32 0.73 16 9 C -0.17 -4.04 8.92 37.16 0.33 -3.71 16 10 C -0.49 -13.49 8.84 -34.44 -0.30 -13.79 16 11 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 12 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 13 N -0.90 -25.74 11.32 55.43 0.63 -25.11 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.11 -1.65 3.15 -89.67 -0.28 -1.93 16 19 C -0.14 -1.98 6.62 -25.92 -0.17 -2.15 16 20 C -0.14 -1.69 8.08 -25.92 -0.21 -1.90 16 21 C -0.13 -1.70 7.64 -25.78 -0.20 -1.89 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.94 7.98 -51.93 -0.41 0.53 16 26 H 0.09 1.94 6.92 -51.93 -0.36 1.58 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.32 6.56 7.04 -39.29 -0.28 6.28 16 30 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 32 H 0.00 0.08 6.83 -51.93 -0.35 -0.28 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.31 7.14 -51.93 -0.37 0.94 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.03 7.98 -51.93 -0.41 0.61 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -27.41 308.19 -8.77 -36.17 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.38 Total: 5.66 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -1.05 Total: -23.32 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.04 Total: -39.80 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.41 -8.77 -36.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324890595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.102 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds