Wall clock time and date at job start Mon Mar 30 2020 02:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47376 * 2 1 4 4 C 1.52998 * 109.46955 * 183.89892 * 3 2 1 5 5 H 1.08999 * 109.47315 * 54.42520 * 4 3 2 6 6 N 1.46900 * 109.47058 * 294.42500 * 4 3 2 7 7 C 1.46894 * 110.99849 * 100.28024 * 6 4 3 8 8 H 1.09001 * 109.47458 * 326.04749 * 7 6 4 9 9 C 1.52999 * 109.47258 * 86.04374 * 7 6 4 10 10 C 1.50705 * 109.47330 * 206.04354 * 7 6 4 11 11 H 1.08007 * 119.99466 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00189 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99981 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 120.00006 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47085 * 89.99453 * 14 12 10 16 16 H 1.48497 * 109.46978 * 209.99833 * 14 12 10 17 17 H 1.48505 * 109.46959 * 329.99378 * 14 12 10 18 18 C 1.52999 * 109.47063 * 174.42796 * 4 3 2 19 19 C 1.53780 * 113.61699 * 179.97438 * 18 4 3 20 20 C 1.53779 * 87.17325 * 140.02009 * 19 18 4 21 21 C 1.53779 * 87.08357 * 334.52820 * 20 19 18 22 22 H 1.08994 * 109.47188 * 300.00352 * 1 2 3 23 23 H 1.09005 * 109.46817 * 59.99888 * 1 2 3 24 24 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46824 * 239.99867 * 2 1 3 26 26 H 1.08996 * 109.46723 * 120.00389 * 2 1 3 27 27 H 1.09000 * 109.46978 * 63.89367 * 3 2 1 28 28 H 1.09001 * 109.47116 * 303.89598 * 3 2 1 29 29 H 1.00901 * 110.99969 * 224.23620 * 6 4 3 30 30 H 1.09001 * 109.47036 * 60.00114 * 9 7 6 31 31 H 1.08998 * 109.47549 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.47320 * 300.00333 * 9 7 6 33 33 H 0.96997 * 119.99712 * 180.02562 * 13 12 10 34 34 H 1.09004 * 112.90887 * 48.74307 * 18 4 3 35 35 H 1.08995 * 113.61384 * 25.43097 * 19 18 4 36 36 H 1.09001 * 113.61337 * 254.60916 * 19 18 4 37 37 H 1.09011 * 113.61412 * 89.07576 * 20 19 18 38 38 H 1.09002 * 113.61575 * 219.97379 * 20 19 18 39 39 H 1.08998 * 113.61686 * 139.97915 * 21 20 19 40 40 H 1.09005 * 113.61141 * 270.79733 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5669 1.4435 -0.0981 5 1 3.8755 0.8650 -0.9688 6 7 4.1360 0.8426 1.1157 7 6 4.5286 -0.5527 0.8779 8 1 3.8364 -1.0096 0.1707 9 6 5.9457 -0.5928 0.3025 10 6 4.4929 -1.3133 2.1785 11 1 4.2075 -0.8101 3.0906 12 6 4.8257 -2.6510 2.2043 13 7 5.1737 -3.2635 1.0937 14 14 4.7807 -3.5938 3.8163 15 1 3.4304 -4.1809 4.0088 16 1 5.7927 -4.6800 3.7828 17 1 5.0834 -2.6698 4.9387 18 6 4.0680 2.8823 -0.2380 19 6 5.5981 2.9942 -0.3439 20 6 5.3687 4.0855 -1.4028 21 6 4.0102 3.4205 -1.6803 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.7349 1.9357 0.9228 28 1 1.6209 1.9761 -0.8530 29 1 4.9159 1.3848 1.4561 30 1 6.6381 -0.1360 1.0096 31 1 6.2373 -1.6282 0.1265 32 1 5.9716 -0.0427 -0.6382 33 1 5.4075 -4.2047 1.1118 34 1 3.6311 3.5572 0.4980 35 1 6.0753 2.0970 -0.7380 36 1 6.0731 3.3615 0.5658 37 1 5.2864 5.0890 -0.9849 38 1 6.0612 4.0313 -2.2429 39 1 3.2019 4.1322 -1.8487 40 1 4.0530 2.6408 -2.4408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324890595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:13 Heat of formation + Delta-G solvation = -21.978511 kcal Electronic energy + Delta-G solvation = -16532.926515 eV Core-core repulsion = 14153.548821 eV Total energy + Delta-G solvation = -2379.377693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38054 -37.51676 -35.55883 -33.90022 -31.30743 -28.25997 -27.25807 -26.39207 -26.19543 -22.93685 -21.77187 -21.44100 -20.21678 -18.25817 -16.89437 -16.72950 -16.13508 -15.91900 -15.00313 -14.90693 -14.68799 -14.12879 -13.71526 -13.50127 -13.33150 -13.09096 -12.98751 -12.83954 -12.74703 -12.53071 -12.25735 -12.22410 -12.00486 -11.85551 -11.71188 -11.32953 -11.26719 -11.09020 -10.80334 -10.72194 -10.42610 -8.80976 -8.06177 -6.15947 1.41891 1.42535 1.52960 2.45203 3.22046 3.55671 3.75480 3.83220 4.00259 4.10191 4.27566 4.31903 4.46823 4.55350 4.67453 4.75174 4.86261 4.88027 4.92133 4.96406 4.99433 5.02673 5.07131 5.11425 5.13790 5.18610 5.27314 5.37166 5.46048 5.47582 5.56189 5.69350 5.70617 5.75421 5.91929 6.35547 6.76981 6.95937 7.04735 7.54119 8.99036 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.008394 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.018858 B = 3334.927812 C = 4094.949084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C -0.090 4.090 4 C 0.097 3.903 5 H 0.020 0.980 6 N -0.679 5.679 7 C 0.220 3.780 8 H 0.011 0.989 9 C -0.154 4.154 10 C -0.507 4.507 11 H 0.051 0.949 12 C 0.008 3.992 13 N -0.923 5.923 14 Si 0.954 3.046 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.270 1.270 18 C -0.113 4.113 19 C -0.148 4.148 20 C -0.129 4.129 21 C -0.128 4.128 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.328 0.672 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.259 0.741 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 12.573 -4.680 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.013 4.013 5 H 0.038 0.962 6 N -0.309 5.309 7 C 0.111 3.889 8 H 0.029 0.971 9 C -0.214 4.214 10 C -0.546 4.546 11 H 0.069 0.931 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.780 3.220 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.132 4.132 19 C -0.185 4.185 20 C -0.166 4.166 21 C -0.166 4.166 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.076 12.228 -4.468 13.642 hybrid contribution 1.070 -1.083 0.227 1.540 sum -3.006 11.144 -4.240 12.297 Atomic orbital electron populations 1.21708 0.94751 1.01255 1.02067 1.21457 0.96326 0.97775 1.00399 1.21492 0.94260 0.95690 1.01372 1.21574 0.95353 0.93413 0.90984 0.96226 1.60703 1.36692 1.03192 1.30306 1.18989 0.90484 0.85041 0.94368 0.97146 1.22270 1.00586 1.01549 0.96952 1.21472 1.43576 0.94483 0.95083 0.93066 1.25665 0.95410 0.98599 0.99251 1.70014 1.47778 1.10740 1.27883 0.85616 0.77600 0.78222 0.80523 1.20490 1.21043 1.19461 1.22890 0.96010 0.95597 0.98680 1.22960 0.96212 0.99289 1.00067 1.22759 0.97135 0.98193 0.98519 1.22925 0.98349 0.99962 0.95387 0.92426 0.91595 0.93551 0.94883 0.93703 0.92068 0.90996 0.85475 0.95358 0.92374 0.96068 0.93231 0.88340 0.92170 0.91389 0.88708 0.91227 0.89977 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.91 71.98 0.71 -3.38 16 2 C -0.12 -4.48 4.68 30.59 0.14 -4.34 16 3 C -0.09 -2.90 4.88 30.59 0.15 -2.75 16 4 C 0.10 3.38 1.81 44.91 0.08 3.46 16 5 H 0.02 0.78 7.02 -2.39 -0.02 0.76 16 6 N -0.68 -28.60 5.84 -473.32 -2.76 -31.37 16 7 C 0.22 11.17 1.57 44.17 0.07 11.24 16 8 H 0.01 0.60 6.11 -2.39 -0.01 0.59 16 9 C -0.15 -7.59 8.92 71.98 0.64 -6.94 16 10 C -0.51 -28.55 8.84 25.60 0.23 -28.32 16 11 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 12 C 0.01 0.47 5.30 84.65 0.45 0.92 16 13 N -0.92 -54.19 11.32 21.45 0.24 -53.95 16 14 Si 0.95 44.91 29.54 68.60 2.03 46.94 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 C -0.11 -3.07 3.15 -10.18 -0.03 -3.10 16 19 C -0.15 -3.94 6.62 31.12 0.21 -3.74 16 20 C -0.13 -2.67 8.08 31.12 0.25 -2.42 16 21 C -0.13 -2.88 7.64 31.21 0.24 -2.65 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 1.29 7.98 -2.39 -0.02 1.27 16 26 H 0.04 2.03 6.92 -2.39 -0.02 2.01 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.33 13.27 7.04 -89.69 -0.63 12.64 16 30 H 0.03 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 32 H 0.02 0.92 6.83 -2.39 -0.02 0.91 16 33 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.06 1.88 7.14 -2.39 -0.02 1.86 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.70 7.98 -2.38 -0.02 1.69 16 Total: -1.00 -59.80 308.19 2.99 -56.81 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.35 Total: 23.59 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 3.14 Total: -42.02 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.52 Total: -85.31 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -59.80 2.99 -56.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324890595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.828 kcal (2) G-P(sol) polarization free energy of solvation -59.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds