Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47444 * 2 1 4 4 C 1.53001 * 109.47408 * 178.88719 * 3 2 1 5 5 H 1.08991 * 109.47237 * 304.19838 * 4 3 2 6 6 N 1.46905 * 109.46743 * 64.19645 * 4 3 2 7 7 C 1.46902 * 110.99833 * 258.65366 * 6 4 3 8 8 H 1.08995 * 109.47112 * 32.92562 * 7 6 4 9 9 C 1.52996 * 109.47080 * 272.92717 * 7 6 4 10 10 C 1.50695 * 109.47383 * 152.92522 * 7 6 4 11 11 H 1.08007 * 119.99563 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00560 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99578 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00594 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.46883 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47351 * 120.00014 * 14 12 10 17 17 H 1.48500 * 109.47114 * 240.00691 * 14 12 10 18 18 C 1.53001 * 109.47378 * 184.19244 * 4 3 2 19 19 C 1.53779 * 113.61651 * 279.67942 * 18 4 3 20 20 C 1.53954 * 87.01990 * 220.04648 * 19 18 4 21 21 C 1.53777 * 113.61547 * 182.07066 * 18 4 3 22 22 H 1.09002 * 109.46832 * 299.99945 * 1 2 3 23 23 H 1.09003 * 109.47317 * 59.99516 * 1 2 3 24 24 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46832 * 240.00055 * 2 1 3 26 26 H 1.09003 * 109.47317 * 120.00484 * 2 1 3 27 27 H 1.08995 * 109.47043 * 58.88715 * 3 2 1 28 28 H 1.08998 * 109.47267 * 298.89298 * 3 2 1 29 29 H 1.00896 * 111.00318 * 134.70530 * 6 4 3 30 30 H 1.08997 * 109.47415 * 303.27583 * 9 7 6 31 31 H 1.09003 * 109.47231 * 63.27636 * 9 7 6 32 32 H 1.09001 * 109.47734 * 183.27661 * 9 7 6 33 33 H 0.97004 * 119.99833 * 179.97438 * 13 12 10 34 34 H 1.09000 * 112.84440 * 50.87154 * 18 4 3 35 35 H 1.09008 * 113.61295 * 334.56502 * 19 18 4 36 36 H 1.08999 * 113.61776 * 105.46845 * 19 18 4 37 37 H 1.09003 * 113.53542 * 270.81013 * 20 19 18 38 38 H 1.08993 * 113.74337 * 139.93759 * 20 19 18 39 39 H 1.09000 * 113.61129 * 254.53581 * 21 18 4 40 40 H 1.09004 * 113.61311 * 25.43186 * 21 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5698 1.4425 0.0280 5 1 3.9174 0.8705 0.8881 6 7 4.0821 0.8315 -1.2058 7 6 4.5077 -0.5545 -0.9696 8 1 3.8726 -1.0045 -0.2067 9 6 5.9622 -0.5674 -0.4950 10 6 4.3899 -1.3413 -2.2494 11 1 4.0348 -0.8597 -3.1486 12 6 4.7365 -2.6755 -2.2729 13 7 5.1694 -3.2617 -1.1781 14 14 4.5911 -3.6506 -3.8595 15 1 4.0828 -2.7666 -4.9390 16 1 5.9256 -4.1795 -4.2395 17 1 3.6487 -4.7810 -3.6612 18 6 4.0779 2.8818 0.1335 19 6 4.0845 3.6327 -1.2085 20 6 5.4312 4.2375 -0.7718 21 6 5.6113 2.9964 0.1182 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6605 1.9620 0.8798 28 1 1.6930 1.9505 -0.8997 29 1 4.8346 1.3794 -1.5952 30 1 6.5893 -0.0654 -1.2317 31 1 6.0373 -0.0481 0.4604 32 1 6.2963 -1.5980 -0.3755 33 1 5.4129 -4.2006 -1.1945 34 1 3.6064 3.4388 0.9431 35 1 4.1612 2.9766 -2.0756 36 1 3.2847 4.3673 -1.3018 37 1 5.3296 5.1663 -0.2105 38 1 6.1626 4.3072 -1.5768 39 1 6.0423 3.2180 1.0945 40 1 6.1062 2.1660 -0.3855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324890597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = -15.141706 kcal Electronic energy + Delta-G solvation = -16664.751178 eV Core-core repulsion = 14285.669950 eV Total energy + Delta-G solvation = -2379.081227 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61685 -37.29067 -35.57277 -33.81954 -31.28251 -28.23728 -27.26662 -26.50649 -26.16641 -22.88779 -22.12791 -21.45597 -19.56338 -18.32329 -16.96425 -16.79793 -16.29523 -15.79987 -15.07606 -14.83537 -14.57912 -14.02441 -13.83493 -13.54810 -13.25654 -13.15972 -12.88101 -12.82305 -12.78807 -12.45977 -12.29546 -12.13020 -11.98587 -11.80240 -11.71545 -11.30811 -11.26801 -11.00990 -10.77969 -10.67002 -10.41298 -8.80676 -8.05556 -6.15166 1.40529 1.42877 1.54523 2.45593 3.22645 3.64093 3.81620 3.88127 3.94722 4.08139 4.29660 4.34806 4.42494 4.63444 4.72709 4.78829 4.86171 4.88257 4.90669 4.97473 5.00327 5.05328 5.07224 5.14293 5.16877 5.21541 5.28154 5.38742 5.46552 5.51715 5.61351 5.72824 5.73654 5.76826 5.91770 6.36875 6.77617 6.97238 7.05120 7.54886 8.99656 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.009098 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.531575 B = 3076.816827 C = 3799.499243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.088 4.088 4 C 0.092 3.908 5 H 0.020 0.980 6 N -0.675 5.675 7 C 0.219 3.781 8 H 0.009 0.991 9 C -0.156 4.156 10 C -0.503 4.503 11 H 0.051 0.949 12 C 0.007 3.993 13 N -0.923 5.923 14 Si 0.953 3.047 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.284 1.284 18 C -0.114 4.114 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.151 4.151 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.329 0.671 30 H 0.027 0.973 31 H 0.020 0.980 32 H 0.059 0.941 33 H 0.258 0.742 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 12.702 2.873 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.126 4.126 4 C -0.018 4.018 5 H 0.038 0.962 6 N -0.307 5.307 7 C 0.110 3.890 8 H 0.027 0.973 9 C -0.215 4.215 10 C -0.541 4.541 11 H 0.070 0.930 12 C -0.190 4.190 13 N -0.564 5.564 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.133 4.133 19 C -0.170 4.170 20 C -0.168 4.168 21 C -0.188 4.188 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.963 12.359 2.692 13.255 hybrid contribution 1.060 -1.093 -0.116 1.527 sum -2.903 11.267 2.576 11.916 Atomic orbital electron populations 1.21701 0.94856 1.01196 1.01993 1.21462 0.96251 0.97807 1.00536 1.21454 0.94083 0.95698 1.01350 1.21442 0.95596 0.93754 0.91018 0.96228 1.60863 1.39960 1.03045 1.26830 1.19001 0.90053 0.85371 0.94589 0.97274 1.22282 1.00814 1.01705 0.96744 1.21479 1.41431 0.94551 0.96680 0.93048 1.25661 0.95489 0.98797 0.99055 1.70020 1.46306 1.11588 1.28518 0.85571 0.77436 0.78515 0.80476 1.19356 1.20841 1.21000 1.22873 0.95886 0.95010 0.99511 1.22926 0.97975 0.99062 0.96995 1.22817 0.97418 0.97228 0.99295 1.23035 0.96356 0.98834 1.00620 0.91681 0.92475 0.93604 0.93410 0.94921 0.91202 0.91883 0.85102 0.95350 0.96148 0.92206 0.93276 0.87731 0.90520 0.90554 0.88677 0.91477 0.91201 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.91 71.98 0.71 -3.37 16 2 C -0.12 -4.50 4.76 30.59 0.15 -4.35 16 3 C -0.09 -2.80 4.87 30.59 0.15 -2.65 16 4 C 0.09 3.21 2.10 44.92 0.09 3.31 16 5 H 0.02 0.78 7.31 -2.39 -0.02 0.76 16 6 N -0.67 -27.92 5.11 -473.32 -2.42 -30.34 16 7 C 0.22 11.02 1.50 44.17 0.07 11.09 16 8 H 0.01 0.52 6.28 -2.39 -0.01 0.51 16 9 C -0.16 -7.65 8.31 71.98 0.60 -7.05 16 10 C -0.50 -28.04 8.84 25.60 0.23 -27.82 16 11 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 12 C 0.01 0.42 5.30 84.65 0.45 0.87 16 13 N -0.92 -54.01 11.30 21.45 0.24 -53.77 16 14 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 C -0.11 -3.10 3.58 -10.27 -0.04 -3.14 16 19 C -0.13 -3.32 7.29 31.18 0.23 -3.09 16 20 C -0.13 -2.88 8.09 31.18 0.25 -2.63 16 21 C -0.15 -4.06 7.34 31.12 0.23 -3.83 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 2.15 6.79 -2.39 -0.02 2.14 16 26 H 0.03 1.26 8.06 -2.39 -0.02 1.24 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.33 13.08 4.70 -89.70 -0.42 12.65 16 30 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 31 H 0.02 0.89 7.89 -2.39 -0.02 0.87 16 32 H 0.06 3.30 5.99 -2.39 -0.01 3.28 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.08 2.27 6.25 -2.38 -0.01 2.26 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.99 6.07 -2.38 -0.01 1.98 16 Total: -1.00 -59.21 304.09 3.52 -55.68 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.56 Total: 24.25 kcal Atomic # 6 Polarization: -45.77 SS G_CDS: 3.11 Total: -42.66 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.18 Total: -84.11 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -59.21 3.52 -55.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324890597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.542 kcal (2) G-P(sol) polarization free energy of solvation -59.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds