Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 H 1.08994 * 109.47648 * 55.00022 * 3 2 1 5 5 C 1.53006 * 109.46799 * 294.99646 * 3 2 1 6 6 C 1.53007 * 109.47029 * 175.00080 * 3 2 1 7 7 N 1.46899 * 109.46989 * 184.99734 * 6 3 2 8 8 C 1.46898 * 110.99842 * 179.97438 * 7 6 3 9 9 H 1.09001 * 110.05919 * 326.41698 * 8 7 6 10 10 C 1.54268 * 110.03061 * 87.83552 * 8 7 6 11 11 C 1.54886 * 104.19475 * 142.89494 * 10 8 7 12 12 C 1.54888 * 102.74843 * 322.05310 * 11 10 8 13 13 H 1.08996 * 110.59843 * 279.20992 * 12 11 10 14 14 C 1.50702 * 110.48729 * 156.62278 * 12 11 10 15 15 H 1.08002 * 120.00299 * 245.23047 * 14 12 11 16 16 C 1.37884 * 119.99942 * 64.94605 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.53881 * 110.03074 * 204.99646 * 8 7 6 23 23 H 1.09003 * 109.46483 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47240 * 299.99724 * 1 2 3 25 25 H 1.08994 * 109.47130 * 60.00406 * 1 2 3 26 26 H 1.08998 * 109.47606 * 239.99591 * 2 1 3 27 27 H 1.09003 * 109.47005 * 119.99369 * 2 1 3 28 28 H 1.09002 * 109.46558 * 60.00451 * 5 3 2 29 29 H 1.08996 * 109.46919 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.46979 * 300.00023 * 5 3 2 31 31 H 1.08996 * 109.46941 * 64.99431 * 6 3 2 32 32 H 1.08996 * 109.47071 * 304.99552 * 6 3 2 33 33 H 1.00904 * 110.99788 * 303.95625 * 7 6 3 34 34 H 1.08999 * 110.48328 * 261.56677 * 10 8 7 35 35 H 1.09001 * 110.48963 * 24.21109 * 10 8 7 36 36 H 1.09006 * 110.75499 * 203.73881 * 11 10 8 37 37 H 1.08999 * 110.75689 * 80.37457 * 11 10 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09004 * 110.02547 * 121.43062 * 22 8 7 40 40 H 1.08993 * 110.02920 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3075 6 6 3.5648 1.4444 0.1257 7 7 4.0445 2.8277 0.2460 8 6 5.5077 2.8685 0.3696 9 1 5.8612 1.9949 0.9172 10 6 6.1551 2.9126 -1.0300 11 6 7.3743 3.8518 -0.8551 12 6 6.8346 4.9363 0.1100 13 1 6.2478 5.6763 -0.4342 14 6 7.9703 5.6017 0.8439 15 1 8.0615 5.4888 1.9141 16 6 8.8964 6.3497 0.1482 17 7 8.7854 6.4871 -1.1550 18 14 10.3085 7.1681 1.0568 19 1 10.2083 6.8615 2.5063 20 1 11.5990 6.6550 0.5308 21 1 10.2411 8.6379 0.8555 22 6 5.9398 4.1554 1.0944 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 0.5488 2.1252 -1.3969 29 1 1.9988 3.1540 -1.3077 30 1 2.0699 1.5874 -2.1492 31 1 4.0029 0.9836 -0.7596 32 1 3.8571 0.8802 1.0113 33 1 3.7312 3.3880 -0.5324 34 1 6.4808 1.9169 -1.3311 35 1 5.4581 3.3241 -1.7600 36 1 7.6623 4.2927 -1.8095 37 1 8.2121 3.3178 -0.4067 38 1 9.4367 7.0137 -1.6444 39 1 6.5029 3.9061 1.9938 40 1 5.0637 4.7492 1.3548 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378860422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -38.761992 kcal Electronic energy + Delta-G solvation = -15826.412925 eV Core-core repulsion = 13446.307445 eV Total energy + Delta-G solvation = -2380.105480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.27043 -36.63473 -33.57490 -31.86593 -29.53720 -27.99740 -26.95746 -25.48303 -23.57762 -22.35698 -19.96677 -19.61180 -18.70977 -16.47229 -15.60198 -15.28381 -14.81427 -14.49473 -13.94259 -13.64276 -13.21718 -13.02677 -12.56629 -12.31082 -12.06044 -11.87360 -11.65749 -11.52763 -11.01719 -10.94089 -10.81558 -10.65457 -10.57818 -10.52084 -10.38083 -9.95662 -9.71610 -9.46833 -9.06303 -8.71250 -8.30218 -7.87621 -5.94867 -3.96751 3.33050 3.41044 3.45404 4.46575 4.50091 4.83102 4.93320 5.00766 5.24142 5.37499 5.44635 5.46040 5.56136 5.66095 5.70066 5.82471 5.85578 5.93014 5.95113 5.97948 6.04023 6.04925 6.29557 6.35410 6.42548 6.60209 6.67612 6.79490 6.93542 7.15884 7.23729 7.40166 7.64980 7.77042 7.83934 7.96260 8.10557 8.54340 9.06826 9.66846 11.14710 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.072411 B = 0.004638 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.588752 B = 6035.279632 C = 6134.061841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.078 0.922 5 C -0.151 4.151 6 C 0.063 3.937 7 N -0.685 5.685 8 C 0.084 3.916 9 H 0.064 0.936 10 C -0.155 4.155 11 C -0.098 4.098 12 C 0.046 3.954 13 H 0.029 0.971 14 C -0.510 4.510 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.106 4.106 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.338 0.662 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.257 0.743 39 H 0.053 0.947 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.545 -10.895 0.018 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.110 4.110 4 H 0.096 0.904 5 C -0.208 4.208 6 C -0.067 4.067 7 N -0.317 5.317 8 C -0.025 4.025 9 H 0.082 0.918 10 C -0.194 4.194 11 C -0.136 4.136 12 C 0.027 3.973 13 H 0.047 0.953 14 C -0.548 4.548 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.144 4.144 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.570 -10.781 0.561 16.569 hybrid contribution 1.180 0.201 -0.583 1.331 sum -11.390 -10.580 -0.022 15.546 Atomic orbital electron populations 1.21806 0.96006 1.01214 1.01919 1.21540 0.95775 0.96582 1.01791 1.21193 0.95397 0.95713 0.98733 0.90399 1.21905 1.01073 1.00833 0.96998 1.21996 0.93958 0.91002 0.99746 1.60792 1.11673 1.09966 1.49224 1.22321 0.85161 0.99349 0.95717 0.91781 1.23151 1.00348 0.99228 0.96646 1.22385 0.94165 0.95789 1.01290 1.19464 0.93371 0.92447 0.91972 0.95298 1.21280 1.09548 1.30187 0.93779 0.92663 1.24996 0.97900 0.96352 0.94846 1.69977 1.36036 1.40669 1.06363 0.86605 0.82493 0.79206 0.80104 1.19804 1.21172 1.21125 1.22294 0.98826 0.94434 0.98869 0.93124 0.92763 0.92554 0.92259 0.92083 0.92630 0.92250 0.93111 0.95756 0.91610 0.84240 0.93944 0.92963 0.91730 0.93460 0.93277 0.92862 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.12 -1.12 5.40 -26.73 -0.14 -1.27 16 3 C -0.09 -1.01 2.60 -90.61 -0.24 -1.25 16 4 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.15 -1.59 8.72 37.16 0.32 -1.27 16 6 C 0.06 0.83 4.97 -3.82 -0.02 0.81 16 7 N -0.69 -10.85 6.17 -105.54 -0.65 -11.50 16 8 C 0.08 1.54 3.23 -66.59 -0.22 1.32 16 9 H 0.06 1.15 7.81 -51.93 -0.41 0.74 16 10 C -0.15 -2.95 6.45 -25.07 -0.16 -3.12 16 11 C -0.10 -2.31 5.74 -24.74 -0.14 -2.45 16 12 C 0.05 1.16 2.72 -90.12 -0.25 0.92 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 14 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 15 H 0.06 1.53 7.54 -52.49 -0.40 1.14 16 16 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 17 N -0.89 -26.00 12.28 55.43 0.68 -25.32 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.11 -2.28 6.15 -25.61 -0.16 -2.43 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 29 H 0.06 0.67 6.68 -51.93 -0.35 0.33 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.34 5.29 6.36 -39.29 -0.25 5.04 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 36 H 0.06 1.66 7.55 -51.93 -0.39 1.26 16 37 H 0.05 1.15 8.05 -51.93 -0.42 0.73 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.05 1.16 7.66 -51.93 -0.40 0.76 16 40 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -28.15 308.69 -8.81 -36.96 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.45 Total: 1.20 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -1.02 Total: -22.57 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.03 Total: -36.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.15 -8.81 -36.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378860422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.801 kcal (2) G-P(sol) polarization free energy of solvation -28.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds