Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 H 1.08994 * 109.47648 * 55.00022 * 3 2 1 5 5 C 1.53006 * 109.46799 * 294.99646 * 3 2 1 6 6 C 1.53007 * 109.47029 * 175.00080 * 3 2 1 7 7 N 1.46899 * 109.46989 * 184.99734 * 6 3 2 8 8 C 1.46898 * 110.99842 * 179.97438 * 7 6 3 9 9 H 1.09001 * 110.05919 * 326.41698 * 8 7 6 10 10 C 1.54268 * 110.03061 * 87.83552 * 8 7 6 11 11 C 1.54886 * 104.19475 * 142.89494 * 10 8 7 12 12 C 1.54888 * 102.74843 * 322.05310 * 11 10 8 13 13 H 1.08996 * 110.59843 * 279.20992 * 12 11 10 14 14 C 1.50702 * 110.48729 * 156.62278 * 12 11 10 15 15 H 1.08002 * 120.00299 * 245.23047 * 14 12 11 16 16 C 1.37884 * 119.99942 * 64.94605 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.53881 * 110.03074 * 204.99646 * 8 7 6 23 23 H 1.09003 * 109.46483 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47240 * 299.99724 * 1 2 3 25 25 H 1.08994 * 109.47130 * 60.00406 * 1 2 3 26 26 H 1.08998 * 109.47606 * 239.99591 * 2 1 3 27 27 H 1.09003 * 109.47005 * 119.99369 * 2 1 3 28 28 H 1.09002 * 109.46558 * 60.00451 * 5 3 2 29 29 H 1.08996 * 109.46919 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.46979 * 300.00023 * 5 3 2 31 31 H 1.08996 * 109.46941 * 64.99431 * 6 3 2 32 32 H 1.08996 * 109.47071 * 304.99552 * 6 3 2 33 33 H 1.00904 * 110.99788 * 303.95625 * 7 6 3 34 34 H 1.08999 * 110.48328 * 261.56677 * 10 8 7 35 35 H 1.09001 * 110.48963 * 24.21109 * 10 8 7 36 36 H 1.09006 * 110.75499 * 203.73881 * 11 10 8 37 37 H 1.08999 * 110.75689 * 80.37457 * 11 10 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09004 * 110.02547 * 121.43062 * 22 8 7 40 40 H 1.08993 * 110.02920 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3075 6 6 3.5648 1.4444 0.1257 7 7 4.0445 2.8277 0.2460 8 6 5.5077 2.8685 0.3696 9 1 5.8612 1.9949 0.9172 10 6 6.1551 2.9126 -1.0300 11 6 7.3743 3.8518 -0.8551 12 6 6.8346 4.9363 0.1100 13 1 6.2478 5.6763 -0.4342 14 6 7.9703 5.6017 0.8439 15 1 8.0615 5.4888 1.9141 16 6 8.8964 6.3497 0.1482 17 7 8.7854 6.4871 -1.1550 18 14 10.3085 7.1681 1.0568 19 1 10.2083 6.8615 2.5063 20 1 11.5990 6.6550 0.5308 21 1 10.2411 8.6379 0.8555 22 6 5.9398 4.1554 1.0944 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 0.5488 2.1252 -1.3969 29 1 1.9988 3.1540 -1.3077 30 1 2.0699 1.5874 -2.1492 31 1 4.0029 0.9836 -0.7596 32 1 3.8571 0.8802 1.0113 33 1 3.7312 3.3880 -0.5324 34 1 6.4808 1.9169 -1.3311 35 1 5.4581 3.3241 -1.7600 36 1 7.6623 4.2927 -1.8095 37 1 8.2121 3.3178 -0.4067 38 1 9.4367 7.0137 -1.6444 39 1 6.5029 3.9061 1.9938 40 1 5.0637 4.7492 1.3548 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378860422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -54.202761 kcal Electronic energy + Delta-G solvation = -15827.082487 eV Core-core repulsion = 13446.307445 eV Total energy + Delta-G solvation = -2380.775042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.69033 -37.83937 -35.17858 -33.59485 -30.56690 -29.79843 -28.34989 -26.76433 -25.39850 -23.32971 -21.38930 -20.93648 -20.34113 -18.53763 -16.83560 -16.57836 -16.44635 -15.93841 -15.10897 -15.02325 -14.36296 -14.17595 -14.03768 -13.97236 -13.49960 -12.97564 -12.87042 -12.75852 -12.66305 -12.60528 -12.38268 -12.06214 -11.98276 -11.51038 -11.45938 -11.41645 -11.36116 -11.30349 -10.89302 -10.79133 -10.44513 -9.19395 -8.10735 -6.20198 1.39846 1.41502 1.53322 2.44256 3.18995 3.30723 3.91778 4.01246 4.05084 4.14756 4.17010 4.33047 4.48988 4.66298 4.69531 4.71935 4.79946 4.84295 4.87593 4.98718 5.00077 5.08944 5.15388 5.17559 5.19336 5.25515 5.27691 5.29926 5.43903 5.48464 5.56739 5.58989 5.66671 5.94308 6.01261 6.26251 6.43222 6.56269 6.91493 7.46997 8.98092 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.072411 B = 0.004638 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.588752 B = 6035.279632 C = 6134.061841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.086 4.086 4 H 0.070 0.930 5 C -0.150 4.150 6 C 0.063 3.937 7 N -0.687 5.687 8 C 0.096 3.904 9 H 0.076 0.924 10 C -0.140 4.140 11 C -0.092 4.092 12 C 0.038 3.962 13 H -0.004 1.004 14 C -0.531 4.531 15 H 0.052 0.948 16 C 0.010 3.990 17 N -0.921 5.921 18 Si 0.953 3.047 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.098 4.098 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.340 0.660 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.259 0.741 39 H 0.047 0.953 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.261 -12.158 0.467 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.105 4.105 4 H 0.088 0.912 5 C -0.207 4.207 6 C -0.066 4.066 7 N -0.318 5.318 8 C -0.014 4.014 9 H 0.094 0.906 10 C -0.180 4.180 11 C -0.131 4.131 12 C 0.019 3.981 13 H 0.014 0.986 14 C -0.569 4.569 15 H 0.070 0.930 16 C -0.189 4.189 17 N -0.561 5.561 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.136 4.136 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.303 -12.055 1.016 17.981 hybrid contribution 1.373 0.612 -0.730 1.671 sum -11.930 -11.444 0.286 16.533 Atomic orbital electron populations 1.21795 0.95071 1.01943 1.02002 1.21513 0.96564 0.95238 1.02065 1.21138 0.93756 0.96922 0.98661 0.91173 1.21897 1.01954 1.00074 0.96779 1.22078 0.95393 0.89198 0.99937 1.60718 1.09756 1.11822 1.49547 1.22075 0.86808 0.97829 0.94649 0.90619 1.23035 0.98255 0.99111 0.97553 1.22174 0.95662 0.96105 0.99134 1.19445 0.93159 0.92568 0.92890 0.98573 1.21648 1.10608 1.30774 0.93877 0.93017 1.25787 1.00443 0.97005 0.95641 1.70102 1.36960 1.41290 1.07698 0.85576 0.79263 0.78150 0.79101 1.19090 1.20613 1.20664 1.22145 0.97919 0.95608 0.97949 0.92117 0.92844 0.92325 0.91929 0.91888 0.91359 0.93353 0.92889 0.95455 0.91424 0.84070 0.91735 0.92390 0.94593 0.94649 0.93196 0.93396 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 71.98 0.70 -1.44 16 2 C -0.12 -1.90 5.40 30.60 0.17 -1.73 16 3 C -0.09 -1.72 2.60 -10.79 -0.03 -1.75 16 4 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 5 C -0.15 -2.87 8.72 71.98 0.63 -2.25 16 6 C 0.06 1.52 4.97 86.31 0.43 1.95 16 7 N -0.69 -20.60 6.17 -487.82 -3.01 -23.61 16 8 C 0.10 3.39 3.23 45.64 0.15 3.54 16 9 H 0.08 2.53 7.81 -2.39 -0.02 2.51 16 10 C -0.14 -5.20 6.45 31.67 0.20 -4.99 16 11 C -0.09 -4.41 5.74 31.88 0.18 -4.23 16 12 C 0.04 1.97 2.72 -10.47 -0.03 1.94 16 13 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 14 C -0.53 -30.21 8.47 25.60 0.22 -29.99 16 15 H 0.05 2.90 7.54 -2.91 -0.02 2.88 16 16 C 0.01 0.55 5.35 84.66 0.45 1.00 16 17 N -0.92 -54.82 12.28 21.45 0.26 -54.55 16 18 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 C -0.10 -4.19 6.15 31.32 0.19 -4.00 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.80 6.56 -2.39 -0.02 0.78 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.13 6.56 -2.39 -0.02 1.11 16 29 H 0.05 1.03 6.68 -2.39 -0.02 1.01 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 33 H 0.34 10.16 6.36 -89.69 -0.57 9.59 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 2.08 7.56 -2.39 -0.02 2.06 16 36 H 0.04 1.89 7.55 -2.38 -0.02 1.87 16 37 H 0.03 1.73 8.05 -2.39 -0.02 1.71 16 38 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 39 H 0.05 2.07 7.66 -2.38 -0.02 2.06 16 40 H 0.05 2.27 7.92 -2.39 -0.02 2.25 16 Total: -1.00 -60.34 308.69 2.95 -57.40 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.41 Total: 16.05 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 3.26 Total: -41.95 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.75 Total: -78.17 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.34 2.95 -57.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378860422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.196 kcal (2) G-P(sol) polarization free energy of solvation -60.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds