Wall clock time and date at job start Mon Mar 30 2020 02:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53004 * 109.47326 * 2 1 4 4 C 1.53008 * 109.47196 * 119.99838 * 2 1 3 5 5 H 1.09003 * 112.90619 * 311.25211 * 4 2 1 6 6 C 1.53953 * 113.66346 * 82.55246 * 4 2 1 7 7 C 1.53785 * 87.11230 * 139.89027 * 6 4 2 8 8 C 1.53777 * 113.61253 * 180.02562 * 4 2 1 9 9 H 1.09004 * 113.61796 * 334.65265 * 8 4 2 10 10 N 1.46901 * 113.61354 * 105.47443 * 8 4 2 11 11 C 1.46907 * 111.00060 * 203.46748 * 10 8 4 12 12 C 1.52996 * 109.47007 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72505 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46683 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99743 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99986 * 18 16 14 22 22 H 1.09004 * 109.47430 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47484 * 59.99956 * 1 2 3 24 24 H 1.09000 * 109.47243 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47763 * 239.99919 * 2 1 3 26 26 H 1.08996 * 109.47206 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.46875 * 300.00417 * 3 2 1 28 28 H 1.09004 * 109.47018 * 59.99561 * 3 2 1 29 29 H 1.09001 * 113.53878 * 25.33667 * 6 4 2 30 30 H 1.08997 * 113.74067 * 254.46836 * 6 4 2 31 31 H 1.08995 * 113.61439 * 220.09136 * 7 6 4 32 32 H 1.09001 * 113.61200 * 89.18182 * 7 6 4 33 33 H 1.00902 * 110.99849 * 327.42133 * 10 8 4 34 34 H 1.09000 * 109.46801 * 59.99734 * 11 10 8 35 35 H 1.08994 * 109.47121 * 299.99926 * 11 10 8 36 36 H 1.09000 * 109.47441 * 60.00268 * 12 11 10 37 37 H 1.09002 * 109.47087 * 299.99714 * 12 11 10 38 38 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 39 39 H 1.08998 * 109.47454 * 300.00107 * 13 12 11 40 40 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5572 -0.3778 2.1643 6 6 2.0736 -2.2539 1.1076 7 6 3.4132 -2.2164 1.8619 8 6 3.5737 -0.7762 1.3458 9 1 4.0746 -0.7118 0.3798 10 7 4.1341 0.1470 2.3416 11 6 5.5325 0.4719 2.0301 12 6 6.0801 1.4337 3.0864 13 6 7.5363 1.7725 2.7616 14 6 8.0756 2.7204 3.8017 15 1 7.4428 3.0486 4.6130 16 6 9.3783 3.1646 3.7205 17 7 10.1505 2.7606 2.7355 18 14 10.0470 4.3390 5.0101 19 1 8.9857 4.6380 6.0049 20 1 11.2064 3.7136 5.6955 21 1 10.4800 5.5993 4.3549 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 2.1628 -2.5937 0.0757 30 1 1.2792 -2.7626 1.6536 31 1 4.1568 -2.9078 1.4657 32 1 3.3066 -2.2825 2.9447 33 1 3.5756 0.9843 2.4131 34 1 5.5861 0.9422 1.0483 35 1 6.1261 -0.4423 2.0280 36 1 6.0264 0.9637 4.0685 37 1 5.4864 2.3478 3.0881 38 1 7.5897 2.2427 1.7797 39 1 8.1303 0.8586 2.7596 40 1 11.0672 3.0728 2.6785 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381628155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:15 Heat of formation + Delta-G solvation = -19.017017 kcal Electronic energy + Delta-G solvation = -15547.694951 eV Core-core repulsion = 13168.445677 eV Total energy + Delta-G solvation = -2379.249273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65174 -35.45735 -34.12183 -32.89845 -30.59487 -27.37095 -26.24926 -25.40704 -23.72900 -22.13690 -20.40615 -20.28024 -19.24765 -16.25548 -15.89279 -15.43993 -14.83780 -14.41365 -14.31250 -13.83158 -13.39406 -12.96327 -12.82818 -12.35858 -12.24142 -12.02709 -11.93938 -11.61551 -11.41103 -11.14251 -10.97160 -10.83398 -10.73663 -10.52407 -10.48357 -10.14203 -9.95691 -9.64652 -9.25708 -8.98251 -8.31394 -8.07969 -5.96344 -3.98207 3.33527 3.40736 3.45508 4.38831 4.48375 4.51454 4.59302 4.82324 4.95096 4.98528 5.18359 5.25967 5.39506 5.48846 5.52910 5.59327 5.69884 5.72867 5.78195 5.83784 5.88408 5.96979 5.99276 6.06528 6.14685 6.20047 6.35788 6.39540 6.45557 6.78238 6.87023 7.18872 7.48312 7.71512 7.73807 7.88487 8.04578 8.48118 9.09350 9.65690 11.15192 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046865 B = 0.004316 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.320569 B = 6485.252688 C = 6753.059612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.107 4.107 5 H 0.094 0.906 6 C -0.137 4.137 7 C -0.128 4.128 8 C 0.065 3.935 9 H 0.067 0.933 10 N -0.679 5.679 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.337 0.663 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.873 -7.446 -5.632 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.207 4.207 4 C -0.125 4.125 5 H 0.112 0.888 6 C -0.175 4.175 7 C -0.167 4.167 8 C -0.045 4.045 9 H 0.085 0.915 10 N -0.310 5.310 11 C -0.070 4.070 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.155 0.845 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.526 -7.917 -5.255 19.936 hybrid contribution 0.463 1.263 -0.152 1.354 sum -17.062 -6.654 -5.407 19.095 Atomic orbital electron populations 1.21794 0.95322 1.01488 1.01523 1.21134 0.95615 0.96276 0.97684 1.21846 1.01292 0.95854 1.01688 1.22956 0.95831 0.95462 0.98297 0.88759 1.22844 0.98285 0.95816 1.00507 1.22991 0.96384 0.96418 1.00892 1.23066 0.93368 0.94074 0.94002 0.91485 1.60723 1.03735 1.18796 1.47713 1.22154 0.87845 0.99405 0.97564 1.21620 0.99082 0.96395 0.97395 1.19074 0.89309 0.96500 0.96752 1.21307 0.96804 1.27081 1.10356 0.92634 1.25033 0.97112 0.96644 0.95779 1.69981 1.07385 1.44878 1.31418 0.86543 0.78948 0.80828 0.81750 1.19720 1.21024 1.21067 0.92743 0.93013 0.92805 0.91442 0.92618 0.92862 0.92542 0.90548 0.91586 0.92045 0.89450 0.84478 0.95961 0.91625 0.92623 0.93767 0.96870 0.96588 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 37.15 0.34 -0.84 16 2 C -0.09 -0.84 2.67 -90.62 -0.24 -1.08 16 3 C -0.15 -1.52 8.98 37.16 0.33 -1.19 16 4 C -0.11 -1.10 2.72 -89.71 -0.24 -1.35 16 5 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.14 -1.32 7.64 -25.83 -0.20 -1.52 16 7 C -0.13 -1.51 7.89 -25.89 -0.20 -1.71 16 8 C 0.07 0.83 2.71 -66.88 -0.18 0.64 16 9 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 10 N -0.68 -10.20 6.55 -105.84 -0.69 -10.89 16 11 C 0.06 1.06 5.54 -3.82 -0.02 1.04 16 12 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.65 7.95 -51.93 -0.41 0.23 16 26 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.34 4.81 8.55 -39.29 -0.34 4.47 16 34 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -29.83 320.89 -9.09 -38.92 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.84 Total: -1.30 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -1.11 Total: -21.84 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.04 Total: -37.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.83 -9.09 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381628155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.907 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds