Wall clock time and date at job start Mon Mar 30 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.53002 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46978 * 304.99596 * 4 3 2 6 6 C 1.53006 * 109.46898 * 185.00035 * 4 3 2 7 7 N 1.46896 * 109.47739 * 65.00044 * 4 3 2 8 8 C 1.46901 * 111.00394 * 204.99982 * 7 4 3 9 9 H 1.08999 * 110.01311 * 325.05950 * 8 7 4 10 10 C 1.54268 * 110.02992 * 86.45021 * 8 7 4 11 11 C 1.54886 * 104.19150 * 142.90033 * 10 8 7 12 12 C 1.54884 * 102.74976 * 322.05370 * 11 10 8 13 13 H 1.09001 * 110.48811 * 279.13386 * 12 11 10 14 14 C 1.50699 * 110.48906 * 156.62497 * 12 11 10 15 15 H 1.08001 * 120.00216 * 245.32479 * 14 12 11 16 16 C 1.37880 * 120.00140 * 65.32794 * 14 12 11 17 17 N 1.31513 * 119.99965 * 8.65545 * 16 14 12 18 18 Si 1.86798 * 120.00013 * 188.66094 * 16 14 12 19 19 H 1.48498 * 109.47460 * 94.97887 * 18 16 14 20 20 H 1.48501 * 109.47067 * 214.97896 * 18 16 14 21 21 H 1.48502 * 109.47196 * 334.97704 * 18 16 14 22 22 C 1.53869 * 110.03244 * 203.61819 * 8 7 4 23 23 H 1.08995 * 109.47490 * 60.00197 * 1 2 3 24 24 H 1.09006 * 109.46644 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47121 * 299.99750 * 1 2 3 26 26 H 1.09008 * 109.47319 * 239.99803 * 2 1 3 27 27 H 1.09004 * 109.47532 * 120.00054 * 2 1 3 28 28 H 1.08997 * 109.47103 * 299.99463 * 3 2 1 29 29 H 1.08997 * 109.46995 * 60.00173 * 3 2 1 30 30 H 1.08999 * 109.46947 * 299.99580 * 6 4 3 31 31 H 1.09000 * 109.46904 * 59.99867 * 6 4 3 32 32 H 1.09000 * 109.46867 * 179.97438 * 6 4 3 33 33 H 1.00904 * 110.99889 * 328.95007 * 7 4 3 34 34 H 1.09005 * 110.48719 * 261.57196 * 10 8 7 35 35 H 1.08996 * 110.49209 * 24.08630 * 10 8 7 36 36 H 1.08996 * 110.76372 * 80.37535 * 11 10 8 37 37 H 1.09004 * 110.75510 * 203.74248 * 11 10 8 38 38 H 0.96999 * 120.00215 * 180.02562 * 17 16 14 39 39 H 1.08995 * 110.03556 * 359.97438 * 22 8 7 40 40 H 1.09004 * 110.03138 * 121.43169 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0800 2.8795 0.1251 7 7 4.0592 0.8574 -1.2561 8 6 5.4066 0.2974 -1.0861 9 1 5.9786 0.9073 -0.3868 10 6 5.3146 -1.1533 -0.5694 11 6 6.4691 -1.8885 -1.2944 12 6 6.4476 -1.2507 -2.7057 13 1 5.6716 -1.7083 -3.3194 14 6 7.7937 -1.3912 -3.3686 15 1 8.3813 -0.5123 -3.5892 16 6 8.2750 -2.6417 -3.6935 17 7 7.4956 -3.6953 -3.5836 18 14 10.0342 -2.8394 -4.2896 19 1 10.9094 -3.1897 -3.1421 20 1 10.0940 -3.9207 -5.3057 21 1 10.4980 -1.5652 -4.8949 22 6 6.1269 0.2355 -2.4444 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.7164 3.4690 -0.7165 31 1 3.7170 3.3137 1.0567 32 1 5.1700 2.8795 0.1251 33 1 3.4188 0.1593 -1.6034 34 1 5.4615 -1.1838 0.5102 35 1 4.3533 -1.5927 -0.8353 36 1 7.4207 -1.6973 -0.7986 37 1 6.2701 -2.9587 -1.3512 38 1 7.8343 -4.5751 -3.8119 39 1 5.4766 0.6204 -3.2298 40 1 7.0492 0.8151 -2.4047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382106291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:39 Heat of formation + Delta-G solvation = -37.854730 kcal Electronic energy + Delta-G solvation = -16091.232996 eV Core-core repulsion = 13711.166858 eV Total energy + Delta-G solvation = -2380.066138 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.44819 -36.17558 -33.32262 -32.11445 -29.78570 -27.98029 -26.84691 -25.82102 -23.48128 -21.72628 -20.22332 -19.59966 -18.78856 -16.49143 -15.77636 -15.27160 -14.55308 -14.37481 -14.18937 -13.47798 -13.13965 -12.63916 -12.37260 -12.28270 -12.05884 -11.96806 -11.71872 -11.53986 -11.11703 -11.03170 -10.79378 -10.65049 -10.57008 -10.45163 -10.38202 -9.95980 -9.73159 -9.44747 -9.04367 -8.76774 -8.27441 -7.86863 -5.95948 -3.95738 3.34007 3.41214 3.44623 4.49220 4.55521 4.78187 4.95233 5.01183 5.36105 5.38944 5.45557 5.56566 5.58533 5.66901 5.76351 5.80788 5.88532 5.92761 5.98036 5.99480 6.17056 6.18807 6.29795 6.36244 6.43114 6.60676 6.67887 6.80258 6.93277 7.15094 7.22325 7.37192 7.66314 7.73830 7.87281 7.96922 8.09609 8.54814 9.07351 9.67022 11.14274 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043716 B = 0.005667 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.347774 B = 4939.885086 C = 5320.885013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.120 4.120 4 C 0.080 3.920 5 H 0.039 0.961 6 C -0.138 4.138 7 N -0.681 5.681 8 C 0.085 3.915 9 H 0.065 0.935 10 C -0.153 4.153 11 C -0.101 4.101 12 C 0.046 3.954 13 H 0.031 0.969 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.885 3.115 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.106 4.106 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.339 0.661 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.258 0.742 39 H 0.054 0.946 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.292 7.979 8.140 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.158 4.158 4 C -0.030 4.030 5 H 0.057 0.943 6 C -0.196 4.196 7 N -0.314 5.314 8 C -0.025 4.025 9 H 0.083 0.917 10 C -0.192 4.192 11 C -0.139 4.139 12 C 0.028 3.972 13 H 0.049 0.951 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.713 3.287 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.144 4.144 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.078 8.404 7.857 15.294 hybrid contribution 0.836 -1.108 0.288 1.417 sum -9.242 7.296 8.145 14.317 Atomic orbital electron populations 1.21745 0.95903 1.01493 1.01555 1.21605 0.95857 0.97159 1.02192 1.21788 0.94989 0.96735 1.02271 1.21507 0.93684 0.95841 0.91980 0.94257 1.21784 1.01178 0.95944 1.00684 1.60845 1.04116 1.38895 1.27503 1.22337 0.88788 0.92936 0.98400 0.91699 1.23132 1.00373 0.97206 0.98536 1.22406 0.94526 0.99322 0.97661 1.19460 0.96601 0.88912 0.92262 0.95053 1.21233 1.02603 0.92219 1.38925 0.92688 1.24974 0.97195 0.96229 0.95448 1.69983 1.34953 0.98783 1.49183 0.86690 0.85778 0.77774 0.78433 1.20826 1.21386 1.19897 1.22281 0.97865 1.00132 0.94106 0.92712 0.92870 0.93038 0.91639 0.92234 0.91221 0.91859 0.92238 0.93311 0.92792 0.84057 0.93984 0.92930 0.93410 0.92158 0.93212 0.92737 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.13 -1.42 5.76 -26.73 -0.15 -1.58 16 3 C -0.12 -1.32 4.81 -26.73 -0.13 -1.45 16 4 C 0.08 1.05 2.49 -67.71 -0.17 0.88 16 5 H 0.04 0.55 7.73 -51.93 -0.40 0.15 16 6 C -0.14 -1.69 9.40 37.16 0.35 -1.34 16 7 N -0.68 -10.64 5.97 -98.57 -0.59 -11.23 16 8 C 0.08 1.54 3.02 -66.60 -0.20 1.34 16 9 H 0.06 1.16 7.16 -51.93 -0.37 0.79 16 10 C -0.15 -2.89 6.29 -25.07 -0.16 -3.05 16 11 C -0.10 -2.35 5.86 -24.74 -0.15 -2.50 16 12 C 0.05 1.17 2.66 -90.12 -0.24 0.93 16 13 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.51 -14.29 8.45 -34.44 -0.29 -14.58 16 15 H 0.05 1.52 7.56 -52.49 -0.40 1.13 16 16 C 0.06 1.77 5.28 -17.82 -0.09 1.68 16 17 N -0.89 -26.04 12.71 55.43 0.70 -25.34 16 18 Si 0.89 21.58 29.55 -169.99 -5.02 16.56 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.11 -2.26 6.15 -25.62 -0.16 -2.42 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.78 6.43 -51.92 -0.33 0.45 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.71 7.45 -51.93 -0.39 0.33 16 33 H 0.34 5.27 5.87 -39.29 -0.23 5.04 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.96 7.58 -51.93 -0.39 0.57 16 36 H 0.05 1.14 8.05 -51.93 -0.42 0.73 16 37 H 0.06 1.53 7.82 -51.93 -0.41 1.12 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16 40 H 0.05 1.15 7.66 -51.93 -0.40 0.75 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -28.15 310.59 -8.76 -36.90 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.51 Total: 1.55 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -1.02 Total: -23.12 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.12 Total: -36.57 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.15 -8.76 -36.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382106291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.954 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds