Wall clock time and date at job start Mon Mar 30 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.53002 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46978 * 304.99596 * 4 3 2 6 6 C 1.53006 * 109.46898 * 185.00035 * 4 3 2 7 7 N 1.46896 * 109.47739 * 65.00044 * 4 3 2 8 8 C 1.46901 * 111.00394 * 204.99982 * 7 4 3 9 9 H 1.08999 * 110.01311 * 325.05950 * 8 7 4 10 10 C 1.54268 * 110.02992 * 86.45021 * 8 7 4 11 11 C 1.54886 * 104.19150 * 142.90033 * 10 8 7 12 12 C 1.54884 * 102.74976 * 322.05370 * 11 10 8 13 13 H 1.09001 * 110.48811 * 279.13386 * 12 11 10 14 14 C 1.50699 * 110.48906 * 156.62497 * 12 11 10 15 15 H 1.08001 * 120.00216 * 245.32479 * 14 12 11 16 16 C 1.37880 * 120.00140 * 65.32794 * 14 12 11 17 17 N 1.31513 * 119.99965 * 8.65545 * 16 14 12 18 18 Si 1.86798 * 120.00013 * 188.66094 * 16 14 12 19 19 H 1.48498 * 109.47460 * 94.97887 * 18 16 14 20 20 H 1.48501 * 109.47067 * 214.97896 * 18 16 14 21 21 H 1.48502 * 109.47196 * 334.97704 * 18 16 14 22 22 C 1.53869 * 110.03244 * 203.61819 * 8 7 4 23 23 H 1.08995 * 109.47490 * 60.00197 * 1 2 3 24 24 H 1.09006 * 109.46644 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47121 * 299.99750 * 1 2 3 26 26 H 1.09008 * 109.47319 * 239.99803 * 2 1 3 27 27 H 1.09004 * 109.47532 * 120.00054 * 2 1 3 28 28 H 1.08997 * 109.47103 * 299.99463 * 3 2 1 29 29 H 1.08997 * 109.46995 * 60.00173 * 3 2 1 30 30 H 1.08999 * 109.46947 * 299.99580 * 6 4 3 31 31 H 1.09000 * 109.46904 * 59.99867 * 6 4 3 32 32 H 1.09000 * 109.46867 * 179.97438 * 6 4 3 33 33 H 1.00904 * 110.99889 * 328.95007 * 7 4 3 34 34 H 1.09005 * 110.48719 * 261.57196 * 10 8 7 35 35 H 1.08996 * 110.49209 * 24.08630 * 10 8 7 36 36 H 1.08996 * 110.76372 * 80.37535 * 11 10 8 37 37 H 1.09004 * 110.75510 * 203.74248 * 11 10 8 38 38 H 0.96999 * 120.00215 * 180.02562 * 17 16 14 39 39 H 1.08995 * 110.03556 * 359.97438 * 22 8 7 40 40 H 1.09004 * 110.03138 * 121.43169 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0800 2.8795 0.1251 7 7 4.0592 0.8574 -1.2561 8 6 5.4066 0.2974 -1.0861 9 1 5.9786 0.9073 -0.3868 10 6 5.3146 -1.1533 -0.5694 11 6 6.4691 -1.8885 -1.2944 12 6 6.4476 -1.2507 -2.7057 13 1 5.6716 -1.7083 -3.3194 14 6 7.7937 -1.3912 -3.3686 15 1 8.3813 -0.5123 -3.5892 16 6 8.2750 -2.6417 -3.6935 17 7 7.4956 -3.6953 -3.5836 18 14 10.0342 -2.8394 -4.2896 19 1 10.9094 -3.1897 -3.1421 20 1 10.0940 -3.9207 -5.3057 21 1 10.4980 -1.5652 -4.8949 22 6 6.1269 0.2355 -2.4444 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.7164 3.4690 -0.7165 31 1 3.7170 3.3137 1.0567 32 1 5.1700 2.8795 0.1251 33 1 3.4188 0.1593 -1.6034 34 1 5.4615 -1.1838 0.5102 35 1 4.3533 -1.5927 -0.8353 36 1 7.4207 -1.6973 -0.7986 37 1 6.2701 -2.9587 -1.3512 38 1 7.8343 -4.5751 -3.8119 39 1 5.4766 0.6204 -3.2298 40 1 7.0492 0.8151 -2.4047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382106291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:39 Heat of formation + Delta-G solvation = -53.219792 kcal Electronic energy + Delta-G solvation = -16091.899275 eV Core-core repulsion = 13711.166858 eV Total energy + Delta-G solvation = -2380.732417 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85377 -37.54510 -34.84426 -33.67000 -31.16230 -29.77854 -28.01025 -27.24936 -25.38508 -22.60219 -21.47184 -21.09396 -20.55420 -18.53248 -16.97954 -16.69940 -16.40443 -15.68751 -15.27306 -14.95654 -14.42783 -14.13474 -13.77160 -13.67253 -13.37624 -13.10871 -12.98651 -12.88725 -12.72679 -12.60932 -12.35596 -12.15397 -11.91544 -11.62912 -11.54213 -11.44005 -11.37798 -11.20976 -10.91715 -10.83054 -10.43548 -9.17116 -8.12433 -6.19625 1.40240 1.41298 1.51857 2.44146 3.17891 3.33011 3.86710 3.95425 4.09631 4.12942 4.17212 4.33258 4.49681 4.59093 4.69490 4.72532 4.83409 4.86112 4.93843 4.96786 5.04266 5.05630 5.07207 5.12354 5.19979 5.27918 5.33151 5.35475 5.42074 5.43340 5.52107 5.52274 5.66613 5.92173 6.00412 6.31052 6.44389 6.60884 6.91710 7.46850 8.97328 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043716 B = 0.005667 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.347774 B = 4939.885086 C = 5320.885013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.112 4.112 4 C 0.078 3.922 5 H 0.037 0.963 6 C -0.136 4.136 7 N -0.683 5.683 8 C 0.099 3.901 9 H 0.075 0.925 10 C -0.139 4.139 11 C -0.095 4.095 12 C 0.039 3.961 13 H -0.004 1.004 14 C -0.533 4.533 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.921 5.921 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.267 1.267 22 C -0.098 4.098 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.339 0.661 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.031 0.969 38 H 0.260 0.740 39 H 0.052 0.948 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 9.177 9.276 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.150 4.150 4 C -0.032 4.032 5 H 0.055 0.945 6 C -0.193 4.193 7 N -0.315 5.315 8 C -0.011 4.011 9 H 0.093 0.907 10 C -0.178 4.178 11 C -0.134 4.134 12 C 0.020 3.980 13 H 0.015 0.985 14 C -0.571 4.571 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.561 5.561 18 Si 0.776 3.224 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.136 4.136 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.498 9.619 8.998 16.843 hybrid contribution 0.932 -1.477 -0.088 1.749 sum -9.566 8.142 8.910 15.401 Atomic orbital electron populations 1.21723 0.94665 1.01834 1.02230 1.21598 0.96985 0.96962 1.01334 1.21734 0.93257 0.96897 1.03112 1.21630 0.95170 0.96007 0.90378 0.94453 1.21774 1.00413 0.95342 1.01819 1.60792 1.02989 1.38506 1.29259 1.22065 0.90156 0.92655 0.96238 0.90708 1.23013 0.98537 0.96958 0.99282 1.22207 0.95957 0.97960 0.97263 1.19429 0.94461 0.91519 0.92544 0.98546 1.21611 1.03838 0.92334 1.39300 0.93030 1.25751 1.01146 0.95917 0.95704 1.70105 1.36707 0.99176 1.50088 0.85664 0.80804 0.77882 0.78073 1.20114 1.20988 1.19177 1.22131 0.98084 0.97129 0.96230 0.92526 0.92767 0.91865 0.93166 0.92426 0.91354 0.89962 0.92489 0.91039 0.93958 0.84020 0.91798 0.92408 0.94393 0.94964 0.93146 0.92929 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.13 -2.60 5.76 30.59 0.18 -2.43 16 3 C -0.11 -2.17 4.81 30.60 0.15 -2.02 16 4 C 0.08 1.84 2.49 44.92 0.11 1.95 16 5 H 0.04 0.93 7.73 -2.39 -0.02 0.91 16 6 C -0.14 -2.97 9.40 71.98 0.68 -2.29 16 7 N -0.68 -20.31 5.97 -465.77 -2.78 -23.09 16 8 C 0.10 3.47 3.02 45.64 0.14 3.60 16 9 H 0.07 2.52 7.16 -2.39 -0.02 2.50 16 10 C -0.14 -5.10 6.29 31.67 0.20 -4.90 16 11 C -0.10 -4.53 5.86 31.88 0.19 -4.34 16 12 C 0.04 2.02 2.66 -10.47 -0.03 2.00 16 13 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 14 C -0.53 -30.35 8.45 25.60 0.22 -30.13 16 15 H 0.05 2.90 7.56 -2.91 -0.02 2.87 16 16 C 0.01 0.76 5.28 84.66 0.45 1.21 16 17 N -0.92 -55.12 12.71 21.45 0.27 -54.84 16 18 Si 0.95 44.61 29.55 68.60 2.03 46.64 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.10 -4.18 6.15 31.32 0.19 -3.98 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 1.15 6.43 -2.38 -0.02 1.13 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.02 7.45 -2.39 -0.02 1.00 16 33 H 0.34 10.17 5.87 -89.69 -0.53 9.65 16 34 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 36 H 0.04 1.83 8.05 -2.39 -0.02 1.81 16 37 H 0.03 1.67 7.82 -2.38 -0.02 1.65 16 38 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.05 2.23 7.92 -2.39 -0.02 2.21 16 40 H 0.05 2.06 7.66 -2.38 -0.02 2.04 16 Total: -1.00 -60.69 310.59 3.14 -57.54 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.45 Total: 16.81 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 3.18 Total: -43.06 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -2.51 Total: -77.93 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.69 3.14 -57.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382106291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.325 kcal (2) G-P(sol) polarization free energy of solvation -60.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds