Wall clock time and date at job start Mon Mar 30 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47139 * 2 1 4 4 H 1.08998 * 109.47157 * 55.95721 * 3 2 1 5 5 N 1.46900 * 109.46979 * 295.95642 * 3 2 1 6 6 C 1.46909 * 110.99614 * 100.07068 * 5 3 2 7 7 H 1.08997 * 109.47159 * 326.77508 * 6 5 3 8 8 C 1.52994 * 109.46863 * 86.77738 * 6 5 3 9 9 C 1.50699 * 109.46691 * 206.77554 * 6 5 3 10 10 H 1.07994 * 120.00129 * 334.59088 * 9 6 5 11 11 C 1.37877 * 119.99600 * 154.60284 * 9 6 5 12 12 N 1.31513 * 120.00175 * 6.27213 * 11 9 6 13 13 Si 1.86806 * 119.99933 * 186.27688 * 11 9 6 14 14 H 1.48494 * 109.46838 * 269.99909 * 13 11 9 15 15 H 1.48497 * 109.47020 * 29.99490 * 13 11 9 16 16 H 1.48500 * 109.47145 * 149.99616 * 13 11 9 17 17 C 1.52999 * 109.47053 * 175.95811 * 3 2 1 18 18 C 1.54263 * 110.03527 * 297.16436 * 17 3 2 19 19 C 1.54885 * 104.20086 * 217.10753 * 18 17 3 20 20 C 1.54895 * 102.74629 * 37.93994 * 19 18 17 21 21 C 1.53875 * 110.02868 * 179.97438 * 17 3 2 22 22 H 1.09000 * 109.46903 * 185.47748 * 1 2 3 23 23 H 1.09001 * 109.47216 * 305.47591 * 1 2 3 24 24 H 1.08993 * 109.47193 * 65.47517 * 1 2 3 25 25 H 1.08994 * 109.47256 * 240.00046 * 2 1 3 26 26 H 1.09003 * 109.47419 * 119.99798 * 2 1 3 27 27 H 1.00892 * 111.00198 * 224.02654 * 5 3 2 28 28 H 1.09001 * 109.47246 * 54.59236 * 8 6 5 29 29 H 1.08998 * 109.47320 * 174.60225 * 8 6 5 30 30 H 1.09006 * 109.47127 * 294.59610 * 8 6 5 31 31 H 0.97005 * 120.00025 * 355.09890 * 12 11 9 32 32 H 1.09002 * 110.02003 * 58.61070 * 17 3 2 33 33 H 1.09003 * 110.48556 * 335.79104 * 18 17 3 34 34 H 1.08999 * 110.48520 * 98.42416 * 18 17 3 35 35 H 1.08996 * 110.75503 * 279.63206 * 19 18 17 36 36 H 1.08995 * 110.75894 * 156.25276 * 19 18 17 37 37 H 1.09003 * 110.48618 * 203.37859 * 20 19 18 38 38 H 1.08998 * 110.59964 * 80.79360 * 20 19 18 39 39 H 1.09002 * 110.03161 * 238.56854 * 21 17 3 40 40 H 1.08993 * 110.03546 * 359.97438 * 21 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6187 1.9769 0.8515 5 7 1.6317 2.1063 -1.2453 6 6 0.4490 2.9503 -1.0286 7 1 -0.1872 2.4963 -0.2688 8 6 0.8917 4.3380 -0.5604 9 6 -0.3207 3.0770 -2.3180 10 1 0.1868 2.9580 -3.2638 11 6 -1.6729 3.3452 -2.2901 12 7 -2.2669 3.6124 -1.1476 13 14 -2.6612 3.3290 -3.8753 14 1 -2.6565 4.6872 -4.4754 15 1 -2.0535 2.3651 -4.8275 16 1 -4.0590 2.9217 -3.5830 17 6 3.5666 1.4437 0.1017 18 6 4.0077 0.8130 1.4386 19 6 5.2364 1.6526 1.8677 20 6 4.8366 3.0867 1.4402 21 6 4.0936 2.8894 0.1021 22 1 -0.3633 -1.0230 0.0981 23 1 -0.3634 0.5964 0.8369 24 1 -0.3633 0.4265 -0.9349 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.3921 2.6425 -1.6354 28 1 1.6035 4.7524 -1.2744 29 1 0.0229 4.9926 -0.4917 30 1 1.3642 4.2575 0.4186 31 1 -1.7701 3.5512 -0.3167 32 1 3.9966 0.8902 -0.7331 33 1 3.2124 0.8943 2.1795 34 1 4.2900 -0.2298 1.2936 35 1 6.1312 1.3268 1.3374 36 1 5.3839 1.5981 2.9463 37 1 5.7239 3.7033 1.2964 38 1 4.1759 3.5374 2.1807 39 1 4.7801 3.0368 -0.7317 40 1 3.2619 3.5901 0.0294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382764806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:18 Heat of formation + Delta-G solvation = -36.678783 kcal Electronic energy + Delta-G solvation = -16718.625779 eV Core-core repulsion = 14338.610634 eV Total energy + Delta-G solvation = -2380.015145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.96809 -35.95989 -33.47078 -31.41918 -29.41548 -28.50542 -27.20374 -24.74044 -23.78952 -21.00718 -20.41934 -20.11736 -19.22878 -16.71941 -15.89675 -15.14824 -14.82528 -13.72811 -13.53007 -13.35858 -13.32752 -13.00182 -12.45110 -12.12239 -11.88390 -11.41901 -11.34607 -11.19063 -11.03528 -10.93325 -10.81077 -10.65774 -10.59940 -10.36164 -10.21293 -10.08149 -10.01598 -9.90744 -9.68484 -8.46061 -8.27727 -7.17604 -6.26915 -3.94625 3.47855 3.53019 3.68460 4.57381 4.69890 4.74231 4.84011 5.22560 5.37568 5.50948 5.55008 5.57388 5.71370 5.75029 5.84287 5.90411 5.92237 5.96839 6.04720 6.12044 6.18713 6.31500 6.38213 6.42026 6.44739 6.49235 6.58023 6.61754 6.69336 6.83154 6.88387 7.11285 7.23483 7.35569 8.04199 8.39622 8.58570 8.69995 8.99535 9.74656 11.11337 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.007351 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.688560 B = 3808.252636 C = 4166.384931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.093 3.907 4 H 0.040 0.960 5 N -0.672 5.672 6 C 0.194 3.806 7 H 0.043 0.957 8 C -0.168 4.168 9 C -0.569 4.569 10 H 0.051 0.949 11 C 0.016 3.984 12 N -0.918 5.918 13 Si 1.070 2.930 14 H -0.291 1.291 15 H -0.289 1.289 16 H -0.286 1.286 17 C -0.098 4.098 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.131 4.131 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.323 0.677 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.267 0.733 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.988 -4.121 4.970 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.017 4.017 4 H 0.058 0.942 5 N -0.303 5.303 6 C 0.086 3.914 7 H 0.061 0.939 8 C -0.228 4.228 9 C -0.608 4.608 10 H 0.069 0.931 11 C -0.187 4.187 12 N -0.555 5.555 13 Si 0.899 3.101 14 H -0.218 1.218 15 H -0.215 1.215 16 H -0.212 1.212 17 C -0.117 4.117 18 C -0.154 4.154 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.169 4.169 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.141 0.859 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.090 -4.386 4.102 11.741 hybrid contribution 1.925 0.580 1.143 2.313 sum 12.015 -3.805 5.245 13.651 Atomic orbital electron populations 1.21750 0.95640 0.99616 1.03488 1.21497 0.96421 0.96166 1.00086 1.21666 0.91623 0.95431 0.93028 0.94227 1.60894 1.08404 1.36367 1.24591 1.19508 0.87966 0.86508 0.97423 0.93919 1.22639 1.00271 1.02932 0.96938 1.21879 0.95029 1.51470 0.92443 0.93093 1.25739 0.95562 0.93827 1.03598 1.70785 1.41089 1.45157 0.98504 0.83530 0.75774 0.76368 0.74413 1.21778 1.21487 1.21201 1.22072 0.96346 0.95607 0.97638 1.22406 0.97273 0.98678 0.97037 1.22494 0.98046 0.95510 1.00159 1.22339 0.99529 0.96718 0.97445 1.22365 1.00135 0.97273 0.97135 0.94501 0.94016 0.90115 0.92205 0.93547 0.85893 0.94536 0.92836 0.96691 0.92178 0.90890 0.91618 0.91945 0.91822 0.92076 0.92206 0.91963 0.92121 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.60 37.15 0.32 -2.52 16 2 C -0.10 -1.77 5.49 -26.73 -0.15 -1.92 16 3 C 0.09 1.65 1.33 -67.71 -0.09 1.56 16 4 H 0.04 0.77 7.26 -51.93 -0.38 0.40 16 5 N -0.67 -14.10 5.65 -100.95 -0.57 -14.67 16 6 C 0.19 4.74 1.18 -68.86 -0.08 4.66 16 7 H 0.04 1.13 4.87 -51.93 -0.25 0.88 16 8 C -0.17 -3.85 8.02 37.15 0.30 -3.55 16 9 C -0.57 -15.82 8.64 -34.44 -0.30 -16.12 16 10 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 11 C 0.02 0.45 5.45 -17.82 -0.10 0.36 16 12 N -0.92 -27.44 13.63 55.43 0.76 -26.69 16 13 Si 1.07 25.56 29.91 -169.99 -5.08 20.47 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 C -0.10 -1.42 2.53 -89.50 -0.23 -1.65 16 18 C -0.12 -1.45 5.25 -25.08 -0.13 -1.58 16 19 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 20 C -0.12 -1.49 6.83 -25.04 -0.17 -1.66 16 21 C -0.13 -1.85 5.54 -25.58 -0.14 -1.99 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.82 7.82 -51.93 -0.41 0.41 16 24 H 0.08 1.86 7.07 -51.93 -0.37 1.49 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.69 7.15 -51.93 -0.37 0.32 16 27 H 0.32 6.50 6.56 -39.30 -0.26 6.25 16 28 H 0.04 0.79 8.03 -51.93 -0.42 0.37 16 29 H 0.05 1.33 7.85 -51.93 -0.41 0.93 16 30 H 0.01 0.30 7.02 -51.93 -0.36 -0.07 16 31 H 0.27 7.94 6.40 -40.82 -0.26 7.68 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.86 7.76 -51.93 -0.40 0.45 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.18 5.02 -51.93 -0.26 0.92 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -28.64 300.19 -8.47 -37.11 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.16 Total: 5.20 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -0.94 Total: -25.96 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.18 Total: -41.36 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.64 -8.47 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382764806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.436 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds