Wall clock time and date at job start Mon Mar 30 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47139 * 2 1 4 4 H 1.08998 * 109.47157 * 55.95721 * 3 2 1 5 5 N 1.46900 * 109.46979 * 295.95642 * 3 2 1 6 6 C 1.46909 * 110.99614 * 100.07068 * 5 3 2 7 7 H 1.08997 * 109.47159 * 326.77508 * 6 5 3 8 8 C 1.52994 * 109.46863 * 86.77738 * 6 5 3 9 9 C 1.50699 * 109.46691 * 206.77554 * 6 5 3 10 10 H 1.07994 * 120.00129 * 334.59088 * 9 6 5 11 11 C 1.37877 * 119.99600 * 154.60284 * 9 6 5 12 12 N 1.31513 * 120.00175 * 6.27213 * 11 9 6 13 13 Si 1.86806 * 119.99933 * 186.27688 * 11 9 6 14 14 H 1.48494 * 109.46838 * 269.99909 * 13 11 9 15 15 H 1.48497 * 109.47020 * 29.99490 * 13 11 9 16 16 H 1.48500 * 109.47145 * 149.99616 * 13 11 9 17 17 C 1.52999 * 109.47053 * 175.95811 * 3 2 1 18 18 C 1.54263 * 110.03527 * 297.16436 * 17 3 2 19 19 C 1.54885 * 104.20086 * 217.10753 * 18 17 3 20 20 C 1.54895 * 102.74629 * 37.93994 * 19 18 17 21 21 C 1.53875 * 110.02868 * 179.97438 * 17 3 2 22 22 H 1.09000 * 109.46903 * 185.47748 * 1 2 3 23 23 H 1.09001 * 109.47216 * 305.47591 * 1 2 3 24 24 H 1.08993 * 109.47193 * 65.47517 * 1 2 3 25 25 H 1.08994 * 109.47256 * 240.00046 * 2 1 3 26 26 H 1.09003 * 109.47419 * 119.99798 * 2 1 3 27 27 H 1.00892 * 111.00198 * 224.02654 * 5 3 2 28 28 H 1.09001 * 109.47246 * 54.59236 * 8 6 5 29 29 H 1.08998 * 109.47320 * 174.60225 * 8 6 5 30 30 H 1.09006 * 109.47127 * 294.59610 * 8 6 5 31 31 H 0.97005 * 120.00025 * 355.09890 * 12 11 9 32 32 H 1.09002 * 110.02003 * 58.61070 * 17 3 2 33 33 H 1.09003 * 110.48556 * 335.79104 * 18 17 3 34 34 H 1.08999 * 110.48520 * 98.42416 * 18 17 3 35 35 H 1.08996 * 110.75503 * 279.63206 * 19 18 17 36 36 H 1.08995 * 110.75894 * 156.25276 * 19 18 17 37 37 H 1.09003 * 110.48618 * 203.37859 * 20 19 18 38 38 H 1.08998 * 110.59964 * 80.79360 * 20 19 18 39 39 H 1.09002 * 110.03161 * 238.56854 * 21 17 3 40 40 H 1.08993 * 110.03546 * 359.97438 * 21 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6187 1.9769 0.8515 5 7 1.6317 2.1063 -1.2453 6 6 0.4490 2.9503 -1.0286 7 1 -0.1872 2.4963 -0.2688 8 6 0.8917 4.3380 -0.5604 9 6 -0.3207 3.0770 -2.3180 10 1 0.1868 2.9580 -3.2638 11 6 -1.6729 3.3452 -2.2901 12 7 -2.2669 3.6124 -1.1476 13 14 -2.6612 3.3290 -3.8753 14 1 -2.6565 4.6872 -4.4754 15 1 -2.0535 2.3651 -4.8275 16 1 -4.0590 2.9217 -3.5830 17 6 3.5666 1.4437 0.1017 18 6 4.0077 0.8130 1.4386 19 6 5.2364 1.6526 1.8677 20 6 4.8366 3.0867 1.4402 21 6 4.0936 2.8894 0.1021 22 1 -0.3633 -1.0230 0.0981 23 1 -0.3634 0.5964 0.8369 24 1 -0.3633 0.4265 -0.9349 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.3921 2.6425 -1.6354 28 1 1.6035 4.7524 -1.2744 29 1 0.0229 4.9926 -0.4917 30 1 1.3642 4.2575 0.4186 31 1 -1.7701 3.5512 -0.3167 32 1 3.9966 0.8902 -0.7331 33 1 3.2124 0.8943 2.1795 34 1 4.2900 -0.2298 1.2936 35 1 6.1312 1.3268 1.3374 36 1 5.3839 1.5981 2.9463 37 1 5.7239 3.7033 1.2964 38 1 4.1759 3.5374 2.1807 39 1 4.7801 3.0368 -0.7317 40 1 3.2619 3.5901 0.0294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382764806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:18 Heat of formation + Delta-G solvation = -52.996739 kcal Electronic energy + Delta-G solvation = -16719.333379 eV Core-core repulsion = 14338.610634 eV Total energy + Delta-G solvation = -2380.722745 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26247 -37.49465 -35.24074 -33.25971 -30.86863 -29.57025 -28.75891 -26.81973 -25.30067 -22.64781 -21.91717 -21.31251 -20.49286 -18.73726 -17.25144 -16.32192 -16.20791 -15.63367 -15.33351 -14.98024 -14.60942 -14.21927 -14.04090 -13.78486 -13.37361 -13.32332 -12.95074 -12.86227 -12.60791 -12.38052 -11.97680 -11.94758 -11.93438 -11.84244 -11.67194 -11.56036 -11.45041 -11.44809 -11.09148 -10.53120 -10.41129 -8.93398 -8.51679 -6.21245 1.53589 1.62773 1.80260 2.59657 3.22906 3.53171 3.67134 3.71267 3.94617 4.19995 4.30610 4.38775 4.50588 4.55814 4.58783 4.62010 4.67054 4.69770 4.75908 4.83186 4.84176 4.91625 5.03965 5.07301 5.08464 5.13116 5.16394 5.24650 5.35339 5.37917 5.42794 5.46301 5.56686 5.57333 6.03495 6.25119 6.59112 6.85196 6.89055 7.55587 8.85134 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.007351 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.688560 B = 3808.252636 C = 4166.384931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C 0.095 3.905 4 H 0.020 0.980 5 N -0.677 5.677 6 C 0.201 3.799 7 H 0.018 0.982 8 C -0.153 4.153 9 C -0.579 4.579 10 H 0.040 0.960 11 C -0.033 4.033 12 N -0.942 5.942 13 Si 1.113 2.887 14 H -0.276 1.276 15 H -0.276 1.276 16 H -0.286 1.286 17 C -0.092 4.092 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.134 4.134 22 H 0.059 0.941 23 H 0.027 0.973 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.328 0.672 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.255 0.745 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.861 -5.011 5.066 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C -0.015 4.015 4 H 0.038 0.962 5 N -0.307 5.307 6 C 0.092 3.908 7 H 0.036 0.964 8 C -0.212 4.212 9 C -0.617 4.617 10 H 0.059 0.941 11 C -0.230 4.230 12 N -0.581 5.581 13 Si 0.937 3.063 14 H -0.202 1.202 15 H -0.201 1.201 16 H -0.212 1.212 17 C -0.111 4.111 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.171 4.171 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.994 -5.277 4.203 13.761 hybrid contribution 1.383 0.830 1.134 1.972 sum 13.376 -4.447 5.337 15.073 Atomic orbital electron populations 1.21655 0.97465 1.00285 1.00446 1.21492 0.94613 0.95970 1.01587 1.21702 0.94173 0.95054 0.90593 0.96230 1.60744 1.07691 1.35619 1.26684 1.19247 0.88820 0.87509 0.95273 0.96413 1.22423 0.99269 1.01332 0.98213 1.22203 0.95587 1.50655 0.93302 0.94140 1.27042 0.97120 0.93242 1.05597 1.70898 1.41153 1.47297 0.98706 0.82964 0.74505 0.77341 0.71512 1.20235 1.20101 1.21183 1.22016 0.93429 0.96383 0.99258 1.22403 0.97776 0.99725 0.95316 1.22477 0.97685 0.94007 1.01278 1.22343 0.99697 0.97949 0.95948 1.22361 0.99646 0.96254 0.98859 0.92215 0.95373 0.94475 0.91999 0.90504 0.85358 0.93690 0.95565 0.94812 0.93447 0.90533 0.92339 0.90349 0.90471 0.90604 0.90701 0.92759 0.91253 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 8.60 71.98 0.62 -4.85 16 2 C -0.10 -3.25 5.49 30.60 0.17 -3.09 16 3 C 0.09 3.31 1.33 44.92 0.06 3.37 16 4 H 0.02 0.77 7.26 -2.39 -0.02 0.75 16 5 N -0.68 -28.55 5.65 -473.29 -2.68 -31.23 16 6 C 0.20 10.05 1.18 44.17 0.05 10.10 16 7 H 0.02 0.99 4.87 -2.39 -0.01 0.98 16 8 C -0.15 -7.12 8.02 71.98 0.58 -6.54 16 9 C -0.58 -32.83 8.64 25.60 0.22 -32.61 16 10 H 0.04 2.33 7.82 -2.91 -0.02 2.31 16 11 C -0.03 -1.88 5.45 84.65 0.46 -1.42 16 12 N -0.94 -57.87 13.63 21.45 0.29 -57.58 16 13 Si 1.11 51.80 29.91 68.60 2.05 53.85 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 C -0.09 -2.49 2.53 -10.07 -0.03 -2.51 16 18 C -0.11 -2.50 5.25 31.67 0.17 -2.34 16 19 C -0.12 -2.18 6.91 31.89 0.22 -1.96 16 20 C -0.12 -2.65 6.83 31.69 0.22 -2.43 16 21 C -0.13 -3.54 5.54 31.34 0.17 -3.36 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.03 1.12 7.82 -2.39 -0.02 1.10 16 24 H 0.04 1.74 7.07 -2.39 -0.02 1.73 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 2.09 7.15 -2.39 -0.02 2.08 16 27 H 0.33 13.13 6.56 -89.70 -0.59 12.54 16 28 H 0.04 1.97 8.03 -2.39 -0.02 1.95 16 29 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 30 H 0.03 1.40 7.02 -2.38 -0.02 1.39 16 31 H 0.26 15.85 6.40 -92.70 -0.59 15.25 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 1.38 7.76 -2.39 -0.02 1.36 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.49 5.02 -2.39 -0.01 1.48 16 Total: -1.00 -62.68 300.19 3.15 -59.53 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.57 Total: 23.06 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 2.91 Total: -47.64 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -2.38 Total: -88.81 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.85 kcal Total: -62.68 3.15 -59.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382764806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.534 kcal (2) G-P(sol) polarization free energy of solvation -62.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds