Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 H 1.09008 * 109.46812 * 303.56891 * 3 2 1 5 5 C 1.50698 * 109.47238 * 183.56484 * 3 2 1 6 6 H 1.08000 * 119.99816 * 244.58637 * 5 3 2 7 7 C 1.37878 * 119.99720 * 64.59310 * 5 3 2 8 8 N 1.31510 * 120.00265 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99734 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47112 * 60.00026 * 9 7 5 11 11 H 1.48499 * 109.47218 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47225 * 299.99720 * 9 7 5 13 13 N 1.46895 * 109.46935 * 63.56371 * 3 2 1 14 14 C 1.48534 * 111.00273 * 35.04236 * 13 3 2 15 15 C 1.54936 * 103.22993 * 200.27849 * 14 13 3 16 16 C 1.54604 * 102.92104 * 37.40960 * 15 14 13 17 17 H 1.08998 * 110.30805 * 96.96414 * 16 15 14 18 18 C 1.53005 * 110.39189 * 219.08494 * 16 15 14 19 19 C 1.47904 * 111.00386 * 277.64353 * 13 3 2 20 20 H 1.09001 * 109.91591 * 26.49205 * 19 13 3 21 21 C 1.53007 * 109.91508 * 265.20034 * 19 13 3 22 22 C 1.52992 * 109.47152 * 68.11019 * 21 19 13 23 23 H 1.09007 * 109.46821 * 170.83603 * 1 2 3 24 24 H 1.08993 * 109.47230 * 290.83728 * 1 2 3 25 25 H 1.09002 * 109.46727 * 50.84299 * 1 2 3 26 26 H 1.09003 * 109.47242 * 239.99624 * 2 1 3 27 27 H 1.09006 * 109.46731 * 120.00130 * 2 1 3 28 28 H 0.97002 * 120.00300 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.66121 * 318.71044 * 14 13 3 30 30 H 1.08992 * 110.66897 * 81.84092 * 14 13 3 31 31 H 1.09000 * 110.72429 * 279.05504 * 15 14 13 32 32 H 1.09000 * 110.72692 * 155.76626 * 15 14 13 33 33 H 1.08998 * 109.47054 * 177.15530 * 18 16 15 34 34 H 1.09007 * 109.46965 * 297.15368 * 18 16 15 35 35 H 1.08995 * 109.46834 * 57.15638 * 18 16 15 36 36 H 1.08999 * 109.46670 * 188.11093 * 21 19 13 37 37 H 1.09001 * 109.46869 * 308.10369 * 21 19 13 38 38 H 1.08996 * 109.47421 * 60.14061 * 22 21 19 39 39 H 1.09004 * 109.47037 * 180.14369 * 22 21 19 40 40 H 1.08998 * 109.47349 * 300.13614 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6254 1.9744 -0.8563 5 6 3.5444 1.4433 -0.0883 6 1 4.1333 1.8275 0.7315 7 6 4.1690 0.9539 -1.2159 8 7 3.4520 0.4858 -2.2140 9 14 6.0338 0.9557 -1.3257 10 1 6.5955 0.1377 -0.2207 11 1 6.4535 0.3809 -2.6291 12 1 6.5349 2.3491 -1.2143 13 7 1.6220 2.1096 1.2401 14 6 1.6269 1.1607 2.3829 15 6 0.6974 1.8452 3.4162 16 6 -0.4033 2.4716 2.5294 17 1 -1.2738 1.8170 2.4880 18 6 -0.8006 3.8485 3.0656 19 6 0.2324 2.6047 1.1332 20 1 -0.3222 2.0022 0.4138 21 6 0.2338 4.0718 0.6988 22 6 0.7352 4.1763 -0.7428 23 1 -0.3633 -1.0146 -0.1637 24 1 -0.3633 0.3655 0.9604 25 1 -0.3633 0.6489 -0.7969 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8914 0.1418 -3.0074 29 1 1.2222 0.1944 2.0821 30 1 2.6335 1.0489 2.7857 31 1 1.2349 2.6173 3.9667 32 1 0.2710 1.1097 4.0983 33 1 -1.5396 4.2974 2.4020 34 1 -1.2260 3.7410 4.0634 35 1 0.0808 4.4879 3.1133 36 1 -0.7789 4.4701 0.7611 37 1 0.8902 4.6441 1.3543 38 1 0.0773 3.6061 -1.3986 39 1 0.7386 5.2218 -1.0514 40 1 1.7469 3.7758 -0.8056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384290422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = 4.039064 kcal Electronic energy + Delta-G solvation = -17307.805268 eV Core-core repulsion = 14929.555782 eV Total energy + Delta-G solvation = -2378.249487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46233 -34.79431 -32.61947 -31.96218 -30.32702 -27.99923 -26.97355 -24.69765 -22.98134 -22.40282 -20.78410 -19.05059 -18.34452 -16.29973 -15.51636 -14.53253 -14.41602 -14.28726 -13.84219 -13.37226 -12.86532 -12.65736 -12.12904 -11.91850 -11.77845 -11.43098 -11.17595 -11.13608 -11.03778 -10.80550 -10.69816 -10.52010 -10.40229 -10.21632 -9.88584 -9.80628 -9.67334 -9.60863 -9.41104 -8.75057 -8.26531 -7.00955 -5.94619 -3.96153 3.36533 3.40586 3.44105 4.47442 5.02355 5.14825 5.24028 5.35652 5.46580 5.74350 5.82867 5.85409 5.90952 6.04578 6.09355 6.13880 6.16561 6.20728 6.27993 6.36654 6.41144 6.47842 6.55197 6.62129 6.71644 6.74262 6.77087 6.84761 6.94288 7.03433 7.18593 7.30970 7.51250 7.72505 7.93861 8.23852 8.45088 8.68769 9.11120 9.68075 11.12981 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.009263 C = 0.008976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.113498 B = 3022.050014 C = 3118.521876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.152 4.152 3 C 0.202 3.798 4 H 0.051 0.949 5 C -0.491 4.491 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.498 5.498 14 C 0.029 3.971 15 C -0.121 4.121 16 C -0.100 4.100 17 H 0.062 0.938 18 C -0.139 4.139 19 C 0.050 3.950 20 H 0.063 0.937 21 C -0.101 4.101 22 C -0.157 4.157 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.259 0.741 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 3.113 6.998 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.191 4.191 3 C 0.095 3.905 4 H 0.069 0.931 5 C -0.530 4.530 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.222 5.222 14 C -0.098 4.098 15 C -0.159 4.159 16 C -0.119 4.119 17 H 0.080 0.920 18 C -0.196 4.196 19 C -0.058 4.058 20 H 0.081 0.919 21 C -0.139 4.139 22 C -0.214 4.214 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.140 3.471 6.874 10.501 hybrid contribution 0.455 -0.830 -0.370 1.016 sum -6.685 2.642 6.505 9.694 Atomic orbital electron populations 1.22174 0.99639 0.99373 1.00093 1.22240 0.91605 1.02785 1.02450 1.19609 0.95389 0.88481 0.87006 0.93096 1.21078 0.90922 1.39203 1.01769 0.92266 1.24922 0.97961 0.95711 0.95776 1.69899 1.34903 1.42354 1.06439 0.86648 0.86075 0.78253 0.76907 1.20500 1.21549 1.20347 1.64982 1.18059 1.33464 1.05736 1.23322 0.99046 0.95745 0.91734 1.22593 0.96602 0.99283 0.97398 1.21988 0.97510 0.96538 0.95853 0.91983 1.21900 1.01257 0.96987 0.99468 1.22765 0.91750 0.96242 0.95090 0.91940 1.21563 0.99240 0.96264 0.96865 1.21915 1.03734 0.99722 0.96033 0.94955 0.93561 0.93526 0.89379 0.93672 0.93108 0.92600 0.91149 0.91562 0.92593 0.92818 0.93842 0.92040 0.93212 0.91832 0.93934 0.94388 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 7.95 37.16 0.30 -2.76 16 2 C -0.15 -3.52 4.72 -26.73 -0.13 -3.64 16 3 C 0.20 4.90 1.12 -68.87 -0.08 4.82 16 4 H 0.05 1.35 5.48 -51.92 -0.28 1.06 16 5 C -0.49 -13.37 8.66 -34.44 -0.30 -13.66 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.56 5.31 -17.82 -0.09 1.47 16 8 N -0.90 -25.39 11.65 55.43 0.65 -24.75 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.50 -10.47 4.65 -216.05 -1.00 -11.47 16 14 C 0.03 0.56 5.45 -1.90 -0.01 0.55 16 15 C -0.12 -1.88 6.61 -24.87 -0.16 -2.04 16 16 C -0.10 -1.52 3.11 -89.26 -0.28 -1.80 16 17 H 0.06 0.90 7.96 -51.93 -0.41 0.49 16 18 C -0.14 -1.81 7.91 37.16 0.29 -1.51 16 19 C 0.05 0.91 1.67 -66.64 -0.11 0.80 16 20 H 0.06 1.19 4.25 -51.93 -0.22 0.97 16 21 C -0.10 -1.71 4.43 -26.73 -0.12 -1.83 16 22 C -0.16 -2.89 8.75 37.15 0.33 -2.56 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.84 4.53 -51.93 -0.24 0.60 16 25 H 0.05 0.93 7.32 -51.93 -0.38 0.55 16 26 H 0.09 2.32 6.37 -51.93 -0.33 1.99 16 27 H 0.04 1.04 5.86 -51.93 -0.30 0.73 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.06 1.09 4.15 -51.93 -0.22 0.87 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.02 7.86 -51.93 -0.41 0.61 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.65 6.67 -51.93 -0.35 0.31 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.84 6.86 -51.93 -0.36 0.48 16 36 H 0.05 0.73 6.46 -51.93 -0.34 0.40 16 37 H 0.06 1.10 7.03 -51.93 -0.37 0.73 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.84 6.11 -51.93 -0.32 1.53 16 LS Contribution 284.74 15.07 4.29 4.29 Total: -1.00 -27.27 284.74 -8.05 -35.32 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.59 Total: 2.27 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -0.36 Total: -22.18 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.36 Total: -36.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.27 -8.05 -35.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384290422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.358 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds