Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 H 1.09008 * 109.46812 * 303.56891 * 3 2 1 5 5 C 1.50698 * 109.47238 * 183.56484 * 3 2 1 6 6 H 1.08000 * 119.99816 * 244.58637 * 5 3 2 7 7 C 1.37878 * 119.99720 * 64.59310 * 5 3 2 8 8 N 1.31510 * 120.00265 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99734 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47112 * 60.00026 * 9 7 5 11 11 H 1.48499 * 109.47218 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47225 * 299.99720 * 9 7 5 13 13 N 1.46895 * 109.46935 * 63.56371 * 3 2 1 14 14 C 1.48534 * 111.00273 * 35.04236 * 13 3 2 15 15 C 1.54936 * 103.22993 * 200.27849 * 14 13 3 16 16 C 1.54604 * 102.92104 * 37.40960 * 15 14 13 17 17 H 1.08998 * 110.30805 * 96.96414 * 16 15 14 18 18 C 1.53005 * 110.39189 * 219.08494 * 16 15 14 19 19 C 1.47904 * 111.00386 * 277.64353 * 13 3 2 20 20 H 1.09001 * 109.91591 * 26.49205 * 19 13 3 21 21 C 1.53007 * 109.91508 * 265.20034 * 19 13 3 22 22 C 1.52992 * 109.47152 * 68.11019 * 21 19 13 23 23 H 1.09007 * 109.46821 * 170.83603 * 1 2 3 24 24 H 1.08993 * 109.47230 * 290.83728 * 1 2 3 25 25 H 1.09002 * 109.46727 * 50.84299 * 1 2 3 26 26 H 1.09003 * 109.47242 * 239.99624 * 2 1 3 27 27 H 1.09006 * 109.46731 * 120.00130 * 2 1 3 28 28 H 0.97002 * 120.00300 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.66121 * 318.71044 * 14 13 3 30 30 H 1.08992 * 110.66897 * 81.84092 * 14 13 3 31 31 H 1.09000 * 110.72429 * 279.05504 * 15 14 13 32 32 H 1.09000 * 110.72692 * 155.76626 * 15 14 13 33 33 H 1.08998 * 109.47054 * 177.15530 * 18 16 15 34 34 H 1.09007 * 109.46965 * 297.15368 * 18 16 15 35 35 H 1.08995 * 109.46834 * 57.15638 * 18 16 15 36 36 H 1.08999 * 109.46670 * 188.11093 * 21 19 13 37 37 H 1.09001 * 109.46869 * 308.10369 * 21 19 13 38 38 H 1.08996 * 109.47421 * 60.14061 * 22 21 19 39 39 H 1.09004 * 109.47037 * 180.14369 * 22 21 19 40 40 H 1.08998 * 109.47349 * 300.13614 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6254 1.9744 -0.8563 5 6 3.5444 1.4433 -0.0883 6 1 4.1333 1.8275 0.7315 7 6 4.1690 0.9539 -1.2159 8 7 3.4520 0.4858 -2.2140 9 14 6.0338 0.9557 -1.3257 10 1 6.5955 0.1377 -0.2207 11 1 6.4535 0.3809 -2.6291 12 1 6.5349 2.3491 -1.2143 13 7 1.6220 2.1096 1.2401 14 6 1.6269 1.1607 2.3829 15 6 0.6974 1.8452 3.4162 16 6 -0.4033 2.4716 2.5294 17 1 -1.2738 1.8170 2.4880 18 6 -0.8006 3.8485 3.0656 19 6 0.2324 2.6047 1.1332 20 1 -0.3222 2.0022 0.4138 21 6 0.2338 4.0718 0.6988 22 6 0.7352 4.1763 -0.7428 23 1 -0.3633 -1.0146 -0.1637 24 1 -0.3633 0.3655 0.9604 25 1 -0.3633 0.6489 -0.7969 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8914 0.1418 -3.0074 29 1 1.2222 0.1944 2.0821 30 1 2.6335 1.0489 2.7857 31 1 1.2349 2.6173 3.9667 32 1 0.2710 1.1097 4.0983 33 1 -1.5396 4.2974 2.4020 34 1 -1.2260 3.7410 4.0634 35 1 0.0808 4.4879 3.1133 36 1 -0.7789 4.4701 0.7611 37 1 0.8902 4.6441 1.3543 38 1 0.0773 3.6061 -1.3986 39 1 0.7386 5.2218 -1.0514 40 1 1.7469 3.7758 -0.8056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384290422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -11.717035 kcal Electronic energy + Delta-G solvation = -17308.488504 eV Core-core repulsion = 14929.555782 eV Total energy + Delta-G solvation = -2378.932722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.96833 -36.45155 -34.19189 -33.75400 -31.88539 -29.54559 -28.65063 -26.24907 -24.59230 -24.04462 -22.22303 -20.79291 -19.74503 -18.20067 -17.28720 -16.30769 -15.91008 -15.83205 -15.35108 -14.75425 -14.49160 -14.21535 -13.56801 -13.40330 -13.33373 -13.14181 -12.85903 -12.77510 -12.63885 -12.45640 -12.30722 -12.14924 -11.91156 -11.70627 -11.54190 -11.46937 -11.15899 -11.02244 -11.01023 -10.68245 -10.34291 -8.66686 -8.05757 -6.13885 1.41026 1.41965 1.49515 2.44936 3.22469 3.56844 3.86776 3.96084 4.17647 4.36895 4.41510 4.49110 4.49813 4.57928 4.68099 4.69786 4.78860 4.89025 4.93635 4.95082 5.03276 5.13389 5.14964 5.23101 5.24889 5.28883 5.30846 5.41633 5.48324 5.50952 5.56971 5.67935 5.70136 5.83527 5.88349 6.35023 6.63986 6.84995 7.01275 7.54471 8.99732 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.009263 C = 0.008976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.113498 B = 3022.050014 C = 3118.521876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.145 4.145 3 C 0.210 3.790 4 H 0.025 0.975 5 C -0.506 4.506 6 H 0.045 0.955 7 C 0.012 3.988 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.513 5.513 14 C 0.024 3.976 15 C -0.110 4.110 16 C -0.095 4.095 17 H 0.076 0.924 18 C -0.134 4.134 19 C 0.044 3.956 20 H 0.052 0.948 21 C -0.096 4.096 22 C -0.151 4.151 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.258 0.742 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.930 3.726 8.562 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.184 4.184 3 C 0.103 3.897 4 H 0.043 0.957 5 C -0.545 4.545 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.236 5.236 14 C -0.104 4.104 15 C -0.148 4.148 16 C -0.114 4.114 17 H 0.095 0.905 18 C -0.191 4.191 19 C -0.064 4.064 20 H 0.070 0.930 21 C -0.134 4.134 22 C -0.209 4.209 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.533 4.090 8.453 12.688 hybrid contribution 0.892 -1.001 -0.853 1.589 sum -7.641 3.089 7.600 11.211 Atomic orbital electron populations 1.22018 0.96635 1.00377 1.00884 1.22065 0.94269 1.01620 1.00488 1.19302 0.93662 0.88927 0.87826 0.95716 1.21373 0.92868 1.38903 1.01369 0.93697 1.25600 1.01889 0.95563 0.95582 1.70022 1.36263 1.43028 1.06736 0.85750 0.81446 0.78216 0.77002 1.20015 1.21064 1.20121 1.64867 1.20536 1.33534 1.04708 1.23341 0.99116 0.95690 0.92214 1.22549 0.95873 0.99642 0.96734 1.21996 0.97450 0.98390 0.93566 0.90526 1.21853 1.01285 0.95179 1.00812 1.22874 0.90010 0.96483 0.97056 0.92992 1.21566 1.00813 0.95712 0.95260 1.21826 1.00964 1.00521 0.97558 0.93337 0.91663 0.94207 0.92952 0.93891 0.93260 0.93069 0.92972 0.91259 0.90053 0.91676 0.91763 0.92864 0.90075 0.92125 0.94451 0.92371 0.94224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 7.95 71.98 0.57 -4.90 16 2 C -0.14 -6.87 4.72 30.59 0.14 -6.73 16 3 C 0.21 10.52 1.12 44.17 0.05 10.57 16 4 H 0.03 1.37 5.48 -2.38 -0.01 1.36 16 5 C -0.51 -28.51 8.66 25.60 0.22 -28.29 16 6 H 0.04 2.59 7.81 -2.91 -0.02 2.56 16 7 C 0.01 0.66 5.31 84.66 0.45 1.11 16 8 N -0.92 -53.77 11.65 21.45 0.25 -53.52 16 9 Si 0.95 45.08 29.54 68.60 2.03 47.10 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 N -0.51 -21.58 4.65 -837.46 -3.89 -25.47 16 14 C 0.02 0.91 5.45 86.65 0.47 1.38 16 15 C -0.11 -3.11 6.61 31.80 0.21 -2.90 16 16 C -0.10 -2.57 3.11 -9.91 -0.03 -2.60 16 17 H 0.08 1.89 7.96 -2.39 -0.02 1.87 16 18 C -0.13 -2.93 7.91 71.98 0.57 -2.36 16 19 C 0.04 1.53 1.67 45.06 0.08 1.60 16 20 H 0.05 1.92 4.25 -2.39 -0.01 1.91 16 21 C -0.10 -3.07 4.43 30.59 0.14 -2.94 16 22 C -0.15 -5.57 8.75 71.98 0.63 -4.94 16 23 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.06 2.25 4.53 -2.39 -0.01 2.23 16 25 H 0.04 1.57 7.32 -2.39 -0.02 1.55 16 26 H 0.05 2.85 6.37 -2.39 -0.02 2.83 16 27 H 0.04 2.01 5.86 -2.38 -0.01 1.99 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.05 1.95 4.15 -2.39 -0.01 1.94 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.93 7.86 -2.39 -0.02 1.91 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.28 6.67 -2.39 -0.02 1.27 16 34 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.05 1.26 6.86 -2.39 -0.02 1.25 16 36 H 0.08 2.11 6.46 -2.39 -0.02 2.09 16 37 H 0.06 1.99 7.03 -2.39 -0.02 1.97 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.04 1.80 6.11 -2.39 -0.01 1.78 16 Total: -1.00 -60.31 284.74 2.89 -57.43 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.00 Total: 15.45 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 3.50 Total: -40.99 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -3.64 Total: -78.99 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -60.31 2.89 -57.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384290422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.709 kcal (2) G-P(sol) polarization free energy of solvation -60.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds