Wall clock time and date at job start Mon Mar 30 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47546 * 2 1 4 4 H 1.09002 * 109.46799 * 304.99896 * 3 2 1 5 5 C 1.50699 * 109.47318 * 184.99939 * 3 2 1 6 6 H 1.08004 * 120.00248 * 244.88819 * 5 3 2 7 7 C 1.37874 * 120.00090 * 64.88171 * 5 3 2 8 8 N 1.31518 * 120.00309 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46573 * 90.00840 * 9 7 5 11 11 H 1.48504 * 109.47011 * 210.00327 * 9 7 5 12 12 H 1.48499 * 109.47242 * 330.00694 * 9 7 5 13 13 N 1.46900 * 109.47193 * 64.99741 * 3 2 1 14 14 C 1.48560 * 110.99913 * 64.95167 * 13 3 2 15 15 C 1.54386 * 104.59519 * 159.04218 * 14 13 3 16 16 C 1.54445 * 105.07499 * 336.04702 * 15 14 13 17 17 H 1.09004 * 110.29784 * 118.98029 * 16 15 14 18 18 C 1.52995 * 110.43710 * 241.24716 * 16 15 14 19 19 C 1.48559 * 111.00196 * 180.37317 * 13 3 2 20 20 H 1.09002 * 110.40529 * 319.85485 * 19 13 3 21 21 C 1.52998 * 110.41529 * 82.17941 * 19 13 3 22 22 C 1.52999 * 109.46867 * 293.90778 * 21 19 13 23 23 H 1.08995 * 109.47108 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47044 * 300.00688 * 1 2 3 25 25 H 1.08999 * 109.46718 * 59.99788 * 1 2 3 26 26 H 1.09000 * 109.47492 * 239.99501 * 2 1 3 27 27 H 1.09008 * 109.47238 * 120.00066 * 2 1 3 28 28 H 0.96989 * 120.00276 * 179.97438 * 8 7 5 29 29 H 1.09005 * 110.41062 * 277.81911 * 14 13 3 30 30 H 1.08997 * 110.41110 * 40.14614 * 14 13 3 31 31 H 1.08994 * 110.32162 * 95.04429 * 15 14 13 32 32 H 1.08995 * 110.31966 * 217.14773 * 15 14 13 33 33 H 1.09000 * 109.47802 * 175.59546 * 18 16 15 34 34 H 1.09008 * 109.47276 * 295.59657 * 18 16 15 35 35 H 1.08998 * 109.47244 * 55.59079 * 18 16 15 36 36 H 1.09000 * 109.47102 * 53.90309 * 21 19 13 37 37 H 1.08999 * 109.47125 * 173.90915 * 21 19 13 38 38 H 1.09000 * 109.46754 * 197.39869 * 22 21 19 39 39 H 1.09003 * 109.47475 * 317.39729 * 22 21 19 40 40 H 1.08996 * 109.47419 * 77.39597 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1503 1.8170 0.6870 7 6 4.1396 0.9698 -1.2722 8 7 3.3990 0.5162 -2.2598 9 14 6.0013 0.9726 -1.4259 10 1 6.5423 -0.3110 -0.9113 11 1 6.3799 1.1328 -2.8529 12 1 6.5615 2.0982 -0.6357 13 7 1.6515 2.0993 1.2552 14 6 2.3216 1.4633 2.4185 15 6 2.2700 2.5335 3.5301 16 6 2.1418 3.8804 2.7853 17 1 1.2132 4.3791 3.0629 18 6 3.3415 4.7781 3.0946 19 6 2.1231 3.5077 1.2873 20 1 3.1249 3.5828 0.8644 21 6 1.1537 4.4126 0.5243 22 6 1.1780 4.0481 -0.9614 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.8193 0.1828 -3.0677 29 1 1.7804 0.5687 2.7267 30 1 3.3547 1.2164 2.1739 31 1 1.4046 2.3706 4.1725 32 1 3.1870 2.5122 4.1189 33 1 3.2750 5.6905 2.5019 34 1 3.3412 5.0326 4.1546 35 1 4.2630 4.2509 2.8479 36 1 0.1454 4.2765 0.9153 37 1 1.4541 5.4531 0.6481 38 1 0.7451 4.8625 -1.5424 39 1 2.2078 3.8831 -1.2783 40 1 0.5984 3.1391 -1.1221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384290425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:39 Heat of formation + Delta-G solvation = -13.949049 kcal Electronic energy + Delta-G solvation = -17281.999664 eV Core-core repulsion = 14902.970155 eV Total energy + Delta-G solvation = -2379.029510 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.90708 -34.61897 -32.61124 -31.85727 -30.56465 -27.96047 -26.47287 -24.81997 -22.90490 -22.14020 -20.23849 -19.18683 -18.63512 -16.34273 -15.29854 -14.76001 -14.36976 -13.97384 -13.26254 -12.88185 -12.78774 -12.38423 -12.08606 -12.00697 -11.90136 -11.68930 -11.49093 -11.25027 -10.92882 -10.69725 -10.51160 -10.41059 -10.26203 -10.13337 -9.88163 -9.79336 -9.66567 -9.55390 -9.13372 -8.92660 -8.23632 -7.10984 -5.96394 -4.06242 3.27274 3.34972 3.37321 4.42006 5.11117 5.25133 5.28356 5.32906 5.65804 5.86196 5.88953 5.97111 6.02356 6.11149 6.18721 6.24598 6.37703 6.44273 6.47837 6.53363 6.57436 6.65034 6.67274 6.71282 6.80850 6.90678 6.97454 7.03571 7.15925 7.20445 7.26410 7.39877 7.67853 7.77022 8.04303 8.22780 8.32498 8.49901 9.05289 9.59303 11.04620 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.011910 C = 0.010322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.665049 B = 2350.383734 C = 2711.989726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.538 4.538 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.503 5.503 14 C 0.035 3.965 15 C -0.120 4.120 16 C -0.095 4.095 17 H 0.066 0.934 18 C -0.140 4.140 19 C 0.069 3.931 20 H 0.067 0.933 21 C -0.099 4.099 22 C -0.150 4.150 23 H 0.024 0.976 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 5.074 6.840 8.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.078 3.922 4 H 0.086 0.914 5 C -0.577 4.577 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.227 5.227 14 C -0.094 4.094 15 C -0.158 4.158 16 C -0.114 4.114 17 H 0.085 0.915 18 C -0.198 4.198 19 C -0.040 4.040 20 H 0.085 0.915 21 C -0.137 4.137 22 C -0.207 4.207 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.304 4.947 6.659 8.929 hybrid contribution 2.061 -0.135 -0.253 2.081 sum -1.242 4.812 6.406 8.108 Atomic orbital electron populations 1.21709 0.98881 0.98340 1.00630 1.21530 0.92259 0.99606 1.01135 1.19849 0.93222 0.91282 0.87887 0.91391 1.21710 0.92985 1.41730 1.01268 0.92579 1.24881 0.97377 0.95211 0.95845 1.69904 1.34622 1.41919 1.05878 0.86777 0.86795 0.78322 0.77209 1.20815 1.21272 1.20112 1.65659 1.52119 1.00693 1.04227 1.22955 0.99190 0.96160 0.91083 1.22409 1.00291 0.95333 0.97801 1.21946 0.97711 0.95427 0.96297 0.91505 1.21830 0.98393 0.99413 1.00159 1.22638 0.98083 0.90670 0.92611 0.91530 1.21362 0.99205 0.97219 0.95947 1.21948 1.03052 1.00348 0.95314 0.95733 0.93285 0.94224 0.90104 0.95205 0.93016 0.92137 0.92422 0.92503 0.92628 0.93043 0.93471 0.92746 0.92527 0.93404 0.94910 0.91688 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.80 37.16 0.36 -2.47 16 2 C -0.11 -2.52 5.22 -26.73 -0.14 -2.66 16 3 C 0.18 4.39 1.34 -68.87 -0.09 4.29 16 4 H 0.07 1.74 4.07 -51.93 -0.21 1.53 16 5 C -0.54 -13.98 6.45 -34.44 -0.22 -14.20 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.56 11.68 55.43 0.65 -23.91 16 9 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.50 -10.48 4.52 -215.61 -0.98 -11.46 16 14 C 0.03 0.68 5.32 -2.18 -0.01 0.67 16 15 C -0.12 -1.97 6.66 -25.25 -0.17 -2.13 16 16 C -0.09 -1.54 3.21 -89.14 -0.29 -1.82 16 17 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 18 C -0.14 -2.02 8.91 37.16 0.33 -1.69 16 19 C 0.07 1.32 1.80 -66.07 -0.12 1.20 16 20 H 0.07 1.46 6.04 -51.93 -0.31 1.15 16 21 C -0.10 -1.75 5.54 -26.73 -0.15 -1.89 16 22 C -0.15 -2.84 8.32 37.16 0.31 -2.53 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 2.13 6.37 -51.93 -0.33 1.80 16 27 H 0.03 0.69 6.85 -51.92 -0.36 0.34 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.06 1.17 7.58 -51.93 -0.39 0.78 16 30 H 0.06 1.26 5.77 -51.93 -0.30 0.96 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.84 7.72 -51.93 -0.40 0.44 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.40 7.70 -51.93 -0.40 1.00 16 40 H 0.07 1.38 6.23 -51.93 -0.32 1.06 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -26.35 296.13 -8.24 -34.59 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.08 Total: 1.84 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -0.28 Total: -21.49 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.33 Total: -35.37 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.35 -8.24 -34.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384290425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.644 kcal (2) G-P(sol) polarization free energy of solvation -26.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds