Wall clock time and date at job start Mon Mar 30 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47546 * 2 1 4 4 H 1.09002 * 109.46799 * 304.99896 * 3 2 1 5 5 C 1.50699 * 109.47318 * 184.99939 * 3 2 1 6 6 H 1.08004 * 120.00248 * 244.88819 * 5 3 2 7 7 C 1.37874 * 120.00090 * 64.88171 * 5 3 2 8 8 N 1.31518 * 120.00309 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46573 * 90.00840 * 9 7 5 11 11 H 1.48504 * 109.47011 * 210.00327 * 9 7 5 12 12 H 1.48499 * 109.47242 * 330.00694 * 9 7 5 13 13 N 1.46900 * 109.47193 * 64.99741 * 3 2 1 14 14 C 1.48560 * 110.99913 * 64.95167 * 13 3 2 15 15 C 1.54386 * 104.59519 * 159.04218 * 14 13 3 16 16 C 1.54445 * 105.07499 * 336.04702 * 15 14 13 17 17 H 1.09004 * 110.29784 * 118.98029 * 16 15 14 18 18 C 1.52995 * 110.43710 * 241.24716 * 16 15 14 19 19 C 1.48559 * 111.00196 * 180.37317 * 13 3 2 20 20 H 1.09002 * 110.40529 * 319.85485 * 19 13 3 21 21 C 1.52998 * 110.41529 * 82.17941 * 19 13 3 22 22 C 1.52999 * 109.46867 * 293.90778 * 21 19 13 23 23 H 1.08995 * 109.47108 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47044 * 300.00688 * 1 2 3 25 25 H 1.08999 * 109.46718 * 59.99788 * 1 2 3 26 26 H 1.09000 * 109.47492 * 239.99501 * 2 1 3 27 27 H 1.09008 * 109.47238 * 120.00066 * 2 1 3 28 28 H 0.96989 * 120.00276 * 179.97438 * 8 7 5 29 29 H 1.09005 * 110.41062 * 277.81911 * 14 13 3 30 30 H 1.08997 * 110.41110 * 40.14614 * 14 13 3 31 31 H 1.08994 * 110.32162 * 95.04429 * 15 14 13 32 32 H 1.08995 * 110.31966 * 217.14773 * 15 14 13 33 33 H 1.09000 * 109.47802 * 175.59546 * 18 16 15 34 34 H 1.09008 * 109.47276 * 295.59657 * 18 16 15 35 35 H 1.08998 * 109.47244 * 55.59079 * 18 16 15 36 36 H 1.09000 * 109.47102 * 53.90309 * 21 19 13 37 37 H 1.08999 * 109.47125 * 173.90915 * 21 19 13 38 38 H 1.09000 * 109.46754 * 197.39869 * 22 21 19 39 39 H 1.09003 * 109.47475 * 317.39729 * 22 21 19 40 40 H 1.08996 * 109.47419 * 77.39597 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1503 1.8170 0.6870 7 6 4.1396 0.9698 -1.2722 8 7 3.3990 0.5162 -2.2598 9 14 6.0013 0.9726 -1.4259 10 1 6.5423 -0.3110 -0.9113 11 1 6.3799 1.1328 -2.8529 12 1 6.5615 2.0982 -0.6357 13 7 1.6515 2.0993 1.2552 14 6 2.3216 1.4633 2.4185 15 6 2.2700 2.5335 3.5301 16 6 2.1418 3.8804 2.7853 17 1 1.2132 4.3791 3.0629 18 6 3.3415 4.7781 3.0946 19 6 2.1231 3.5077 1.2873 20 1 3.1249 3.5828 0.8644 21 6 1.1537 4.4126 0.5243 22 6 1.1780 4.0481 -0.9614 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.8193 0.1828 -3.0677 29 1 1.7804 0.5687 2.7267 30 1 3.3547 1.2164 2.1739 31 1 1.4046 2.3706 4.1725 32 1 3.1870 2.5122 4.1189 33 1 3.2750 5.6905 2.5019 34 1 3.3412 5.0326 4.1546 35 1 4.2630 4.2509 2.8479 36 1 0.1454 4.2765 0.9153 37 1 1.4541 5.4531 0.6481 38 1 0.7451 4.8625 -1.5424 39 1 2.2078 3.8831 -1.2783 40 1 0.5984 3.1391 -1.1221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384290425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:39 Heat of formation + Delta-G solvation = -28.213722 kcal Electronic energy + Delta-G solvation = -17282.618227 eV Core-core repulsion = 14902.970155 eV Total energy + Delta-G solvation = -2379.648072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47470 -36.34883 -34.09117 -33.79661 -32.15826 -29.49713 -28.22216 -26.44336 -24.60885 -23.75180 -21.78042 -20.79805 -20.26949 -18.28664 -17.08047 -16.31101 -16.05077 -15.55681 -14.96125 -14.63354 -14.20191 -13.88579 -13.70645 -13.63539 -13.29389 -13.26965 -13.07958 -12.96021 -12.78002 -12.48170 -12.17442 -12.07919 -11.87173 -11.69568 -11.50942 -11.41775 -11.23250 -11.07801 -10.84899 -10.82135 -10.22469 -8.90331 -8.00064 -6.16734 1.34210 1.37189 1.44342 2.41346 3.20705 3.59484 3.88428 3.97166 4.29241 4.43611 4.49204 4.59027 4.62039 4.68175 4.75594 4.79879 4.86335 4.90941 4.93085 5.08898 5.11277 5.13581 5.24893 5.25612 5.29981 5.37084 5.42802 5.46190 5.48670 5.52731 5.60459 5.68999 5.73491 5.87874 6.10723 6.30358 6.48117 6.64830 7.07148 7.51152 8.97008 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.011910 C = 0.010322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.665049 B = 2350.383734 C = 2711.989726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.190 3.810 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.934 3.066 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.501 5.501 14 C 0.032 3.968 15 C -0.112 4.112 16 C -0.089 4.089 17 H 0.086 0.914 18 C -0.136 4.136 19 C 0.064 3.936 20 H 0.032 0.968 21 C -0.094 4.094 22 C -0.141 4.141 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.048 0.952 27 H 0.024 0.976 28 H 0.258 0.742 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 6.349 8.563 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.082 3.918 4 H 0.068 0.932 5 C -0.576 4.576 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.761 3.239 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.225 5.225 14 C -0.097 4.097 15 C -0.150 4.150 16 C -0.108 4.108 17 H 0.104 0.896 18 C -0.194 4.194 19 C -0.045 4.045 20 H 0.050 0.950 21 C -0.132 4.132 22 C -0.198 4.198 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.915 6.229 8.397 11.164 hybrid contribution 2.242 -0.528 -0.782 2.433 sum -1.672 5.701 7.615 9.659 Atomic orbital electron populations 1.21558 0.96293 0.99648 1.00735 1.21404 0.94535 0.99050 0.99236 1.19643 0.91763 0.91439 0.88919 0.93234 1.21936 0.94381 1.40624 1.00696 0.93557 1.25500 1.00846 0.95437 0.95869 1.70016 1.35842 1.43014 1.06206 0.85930 0.82732 0.78175 0.77045 1.20647 1.21087 1.19902 1.65621 1.51964 1.01670 1.03212 1.22958 0.97205 0.97534 0.91962 1.22384 1.01895 0.93930 0.96811 1.21949 0.99478 0.95807 0.93567 0.89581 1.21795 0.96588 0.99028 1.01965 1.22705 0.96618 0.89986 0.95165 0.94996 1.21359 0.99384 0.98153 0.94300 1.21815 1.00526 1.00305 0.97157 0.93837 0.92386 0.94745 0.93289 0.95684 0.93237 0.92095 0.95393 0.90494 0.91378 0.92262 0.90900 0.94534 0.91399 0.90919 0.92378 0.95122 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.80 71.98 0.71 -4.35 16 2 C -0.10 -4.98 5.22 30.59 0.16 -4.82 16 3 C 0.19 9.25 1.34 44.17 0.06 9.30 16 4 H 0.05 2.63 4.07 -2.39 -0.01 2.62 16 5 C -0.54 -28.76 6.45 25.60 0.17 -28.59 16 6 H 0.05 2.53 5.68 -2.91 -0.02 2.51 16 7 C 0.02 1.26 5.30 84.65 0.45 1.71 16 8 N -0.91 -52.16 11.68 21.45 0.25 -51.91 16 9 Si 0.93 44.02 29.54 68.60 2.03 46.05 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.50 -20.71 4.52 -836.06 -3.78 -24.49 16 14 C 0.03 1.24 5.32 86.45 0.46 1.70 16 15 C -0.11 -3.37 6.66 31.56 0.21 -3.16 16 16 C -0.09 -2.63 3.21 -9.84 -0.03 -2.66 16 17 H 0.09 2.27 7.86 -2.38 -0.02 2.25 16 18 C -0.14 -3.53 8.91 71.98 0.64 -2.89 16 19 C 0.06 2.39 1.80 45.06 0.08 2.48 16 20 H 0.03 1.42 6.04 -2.39 -0.01 1.41 16 21 C -0.09 -3.13 5.54 30.59 0.17 -2.96 16 22 C -0.14 -5.33 8.32 71.98 0.60 -4.73 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 2.66 6.37 -2.39 -0.02 2.64 16 27 H 0.02 1.18 6.85 -2.38 -0.02 1.16 16 28 H 0.26 14.25 8.31 -92.72 -0.77 13.48 16 29 H 0.06 2.31 7.58 -2.38 -0.02 2.29 16 30 H 0.03 1.24 5.77 -2.39 -0.01 1.23 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.07 1.88 7.72 -2.39 -0.02 1.87 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.03 1.34 7.70 -2.39 -0.02 1.32 16 40 H 0.04 1.88 6.23 -2.39 -0.01 1.87 16 Total: -1.00 -57.65 296.13 3.14 -54.51 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.98 Total: 14.83 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 3.67 Total: -38.99 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -3.53 Total: -76.40 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -57.65 3.14 -54.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384290425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.295 kcal (2) G-P(sol) polarization free energy of solvation -57.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds